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    "info": {
        "author": "Benjamin Murauer, Michael V\u00f6tter",
        "author_email": "b.murauer@posteo.de",
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            "Development Status :: 3 - Alpha",
            "Environment :: Console",
            "License :: OSI Approved :: BSD License",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 3",
            "Topic :: Scientific/Engineering"
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        "description": "# DBIS Pipeline\nThis pipline can be used to run analyses in a structured way, and stores\nconfigurations and results in a database.\n\n## Usage\n\nthe user writes a minimal plan file which contains only the following\ninformation:\n * \"how do I get the data?\", by providing a dataloader\n * \"what to do with the data?\", by providing a scikit pipeline\n * \"how to process the result?\", by providing result handlers.\n * \"where to additionally store results?\" by providing storage handlers.\n\n\nPlease have a look at the examples for more information.\n\n### CLI\nWe provide a `dbispipeline-link` tool that can be used to link datasets to\nthe data directory. This ensures that datasets are linked in a consistent way\neven on different machines. The general process is as follows:\n 1. Either in the `dbispipeline.ini` or as an argument in the cli call, one can\n define where in general datasets are stored on the local machine. For example,\n many datasets are available on `/storage/nas3/datasets/text`. In this case,\n this would be the value in the configuration:\n\n     ```\n    #dbispipeline.ini:\n    [project]\n    dataset_dir = /storage/nas3/datasets\n    ```\n 2. In a file `data/links.yaml`, one can define specific datasets that are used\n by the software. Thereby, the first path segment will be cut off (not sure why).\n For example, the following yaml file:\n\n    ```yaml\n    ---\n    datasets:\n      - music/acousticbrainz\n      - music/billboard\n      - music/millionsongdataset\n    ```\n    would assume that a physical directory exists at\n    `/storage/nas3/datasets/music/billboard` and after calling the script\n    `dbispipeline-link` without parameters using the above configuration, the\n    following symlinks will be created:\n    ```\n    data/acousticbrainz -> /storage/nas3/datasets/music/acousticbrainz\n    data/billboard -> /storage/nas3/datasets/music/billboard\n    data/millionsongdataset -> /storage/nas3/datasets/music/millionsongdataset\n    ```\n\n    The value of `dataset_dir` from the config can be overwritten in the cli\n    script by using the `-p` option.\n\n\n## Requirements\n\n* python >= 3.6\n* a PostgreSQL database\n* an email server if you want to use notification emails\n\n\n## Installation\n\n1. Install dbispipeline in your python. We recommend using pipenv to keep your\n   dependencies clean: `pipenv install dbispipeline`\n   This call will install a virtual environment as well as all dependencies.\n2. Write your plan(s). See the example plan files for guidance.\n3. call `pipenv run dp <yourplanfile.py>`\n\nEnjoy!\n\n\n## Configuration\nThe framework look in multiple directories for its configuration files.\n* `/usr/local/etc/dbispipeline.ini` used for system wide default.\n* `$HOME/.config/dbispipeline.ini` used for user specific configurations.\n* `./dbispipeline.ini` for project specific configurations.\n\nAnd example configuration file looks like this:\n```ini\n[database]\n\n# url to your postgres database\nhost = your.personal.database\n\n# your database user name\nuser = user\n\n# port of your postgres database, default = 5432\n# port = 5432\n\n# password of your database user\npassword = <secure-password>\n\n# database to use\ndatabase = pipelineresults\n\n# table to be used\nresult_table = my_super_awesome_results\n\n[project]\n# this will be stored in the database\nname = dbispipeline-test\n\n# this is used to store backups of the execution\n# it is possible to override this by setting the DBISPIPELINE_BACKUP_DIR\n# environment variable\n# the default is the temp dir of the os if this option is not set.\nbackup_dir = tmp\n\n# this is used to linke the used datasets spcified in data/links.yaml\n# it is possible to override this by setting the DBISPIPELINE_DATASET_DIR\n# environment variable\ndataset_dir = /storage/nas/datasets\n\n[mail]\n# email address to use as sender\nsender = botname@yourserver.com\n\n# recipient. This should probably be set on a home-directory-basis.\nrecipient = you@yourserver.com\n\n# smtp server address to use\nsmtp_server = smtp.yourserver.com\n\n# use smtp authentication, default = no\n# authenticate = no\n\n# username for smtp authentication, required if authenticate = yes\n# username = foo\n\n# password for smtp authentication, required if authenticate = yes\n# password = bar\n\n# port to use for smtp server connection, default = 465\n# port = 465\n```\n\n\n",
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