Home · Quickstart · Documentation · Citation · NiPy

# interfaces.dipy.tensors

## TensorMode

Link to code

Creates a map of the mode of the diffusion tensors given a set of diffusion-weighted images, as well as their associated b-values and b-vectors. Fits the diffusion tensors and calculates tensor mode with Dipy.

[1] | Daniel B. Ennis and G. Kindlmann, “Orthogonal Tensor Invariants and the Analysis of Diffusion Tensor Magnetic Resonance Images”, Magnetic Resonance in Medicine, vol. 55, no. 1, pp. 136-146, 2006.

### Example

    >>> import nipype.interfaces.dipy as dipy
    >>> mode = dipy.TensorMode()
    >>> mode.inputs.in_file = 'diffusion.nii'
    >>> mode.inputs.bvecs = 'bvecs'
    >>> mode.inputs.bvals = 'bvals'
    >>> mode.run()

Inputs:

    [Mandatory]
    bvals: (an existing file name)
            The input b-value text file
    bvecs: (an existing file name)
            The input b-vector text file
    in_file: (an existing file name)
            The input 4D diffusion-weighted image file

    [Optional]
    out_filename: (a file name)
            The output filename for the Tensor mode image

Outputs:

    out_file: (an existing file name)