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# interfaces.c3

## C3dAffineTool

Link to code

Wraps command c3d_affine_tool

Converts fsl-style Affine registration into ANTS compatible itk format

Example >>> from nipype.interfaces.c3 import C3dAffineTool >>> c3 = C3dAffineTool() >>> c3.inputs.source_file = ‘cmatrix.mat’ >>> c3.inputs.itk_transform = ‘affine.txt’ >>> c3.inputs.fsl2ras = True >>> c3.cmdline ‘c3d_affine_tool -src cmatrix.mat -fsl2ras -oitk affine.txt’

Inputs:

    [Mandatory]
    terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
            Control terminal output

    [Optional]
    args: (a string)
            Additional parameters to the command
    environ: (a dictionary with keys which are a value of type 'str' and with values which
             are a value of type 'str', nipype default value: {})
            Environment variables
    fsl2ras: (a boolean)
    ignore_exception: (a boolean, nipype default value: False)
            Print an error message instead of throwing an exception in case the interface fails to
            run
    itk_transform: (a boolean or a file name)
            Export ITK transform.
    reference_file: (an existing file name)
    source_file: (an existing file name)
    transform_file: (an existing file name)

Outputs:

    itk_transform: (an existing file name)