PKZNfunpipe/__init__.pyPKZN~ funpipe/bam.pyVߏ8 ~[@PT==~jBBڦ4N4"Ai8vdըրғU,6dk{Q;Y+gR[ڮL&@Vkϫ)~g): `s;0][r%4Z--@ufvjZ,O\8z1^g贬!$+OKљ37RCb/2kn`jc=t2_d y#nU{т*qȝLPJ +B`*[$ɲkAKӀӊB^"oJӀwRq1YR%e>"-d)"́-Xu@ XK*M;ETgs[K>z-v*}YHϳKyT iM?;BDF6P-x ԬXrZdc&68jaU+R*5mð ,ِ&ZٰYd%Z\e?]3$BGj!3EmI:HՇװeDaA.s_O"bGˬ+7ڑQV5GBe+YRvT 0Gl+xk^jqaZ-')5G]ҚM!fܻ/vN$1Г;}`˦;|tRҰQ$q^f# ˉߣV&e.& A5UFwnJwiƣ.#J1Qэ)h4Qۃ؟ތ+ȳRz|V3'D.pP*]L p^5hJGtwZϺf]`EtMYGTH`|~VY}_!9/؄=zʒV6zPKZNfunpipe/fasta.pyR=0 + xb K;(n(pSQ<}$DIlkP#ߣhRp0D!oiTINer+bDp0dS֩: @^n A ] XX2w rY.%9rQ3$t W)327j=:r]50h+g*'sQHBaOʽ;R~َr:~jM;p{Ul@褽MsW節^AɄ*O}X2֖vZ$ZI%j5;՟i2F$r?epypZK3ep?&/`,TY}p G w:=" xIJsM]t.oze-\ishS)+Rr8xĀM޴T70:3@nlcf׊nB*H7+;?Nti 1K"-Y:ח`&(IϝLd_l7hSr)BH,rq1]9d"=/Cq#T2+HEU.jOhvs 60j3dҢ ὄhg,ŠkEHJ߾~0LʕZ`LB[sCT ?>٬vF?4M#wh)P+70cG1v#\aeX3_+c 1fUl~R:r^96z:}ߝ~HՈ2gq"-2A&FMW U#Sqoِ W0<b/ү燧#:RpI)nf1*TEonN=\u -fA58 61uJ:D`w{+4eg;Ho^,L!>c!x{J6zG ( _#R vn{ԣؐL 1a'R+sGGB?@=FKj>-7ԫp->C' >Nu"rR:ur|-rUgu:>£_>m葚LC9RYZڬEh:`"Х P=h?/*j-̜ժ%qo#,4Q ó8{fwf0%1y! U.x}-jwgԀxMKDn &WQ\m`2O gNy+4N wg˨# Z1P3~ C~,PKaNK]ufunpipe/phylo.pyUn8}W\dPE$#ig>(FlJR\lˮF!빇^nؤ\8hj42uGcpcYWHx^Bh% ,TZ*!Fez- R tIV*Თzy,F0/m׽ l(8S˾eX\#Xh)ő  P]v6bK~]CV)<0>Im֠M0u@U JP\yv|3nd W@L4W)cĬ,3ul[@:yKcuI4#Ƙ8/:$3XdZ{ 0ڻL0ԳSb",!kp!_8Ľq M&|p~@&uqYn(U m0C`grEWݚgLD406Eͼ63.}ak QQ;8kR:dԮ@䗘G)iSVOS1^t76|LO.P6J(;|;=AvFs85C/cyTn05eOOFq2B(ͧڣ CA RІ'AْX]9p~Vf^Bi7_UJ 7SIJ\7 ֥";HvxXaAGh~4rh@.G$m%F=LG85 ]O^G׆_.**֎k0$cpRН |z>p@cm"((9^_:ir-O@A/b7($ vc({coPKZN!bfunpipe/picard.py}Q0 \ i+8l[ölV+dHB;2j}VMmit|p Nh,JH( *WL&g}jtЈtH9 =ϛeSA ?iՆOK;O͙֙f"w?G"REJLoEb՛1A!tO-05 uc&EnZ9qvs̸㺞eG#ЉG-ŧE ͸盘輲WF1$Fdo/W+ ձw U-i@ 0^Edl<_柱:9@5HGC\R Б-Ak/-ybeϏ:οrGl{e*=y{K`* PKZNsm funpipe/sv.pyeMN0 =œXdFhĆJ(I:MR dȎ>?;Jma?d0&bPUU]Åh,.:;?Gd rRxl #3Å/M^O%nԤ6>SYhRd B#(0):jy1YxY5jJni%dq@ӣzVP[1=D}ߡiGYo<ͿW?PKaNʥfunpipe/utils.pymRˎ0 +_ z@~AEcu0(y$;E"̐vJ[?һK5D^bV(RSUw}M]lkxBZ\q!ƙ|N?r‰+R&UMӰ D=3OMޞ(D~OO0INrM//PK',ٽT[ُl-. Ųl]d;bEB&vd+kyԶ<./3XO5x/h#,DQ#~|f/*$ h4+| BR Lـ AHXd,=x[AE6; fe71ʊ-OB틴!3+Bv13yLm5q6] >p;6ްF<ҋri0t߯ )=bfݫ ` h k<݈~G?;QR̻Ф/$نMv-D ,IJZؐpC`тe1Mk<*ug UUӜ2BayثF <ZܡfPX}6}ӵZ䷎8,|5qpx4FfKM} fL 摥gsB$Vg{_p%J7I/w ȫ2ea<)EE22 ZF-[J 㕿Y_ًiǤpxKpL%;P_R HZSRV)~C>Q[B0 #aec@HLic ֬9f6sfoek#VvSsCOU%y嶖zPn=#GʐDXۀ5=IϠyq Pr1RC:1ҳuҚia-GҔ _5n*@ArñB"Jzfy2{~zCҷa*g g̲'ۥ f_x?w8@7~$j/p;9fl~碈DBWl|׈MiJOXsEBTYj d쨃y Cc߾Ŀ.b@tЛ>je3yw0*[7W3ƓD$2bȡf\}uǎ#j`4i0x 4ս8xf(P㠘+Mצ&R_dmN{ܫj@]̽Ա+]5 jUzTN?ڸ\a*c0Tu7=x@x|CQ(2~ ʼUVY L(Q9WnE̿{1beT`b.J!n #C *-QҒjD9ʊ (Q԰HZ;E:F!5 *LI >І0apcݾu4gqM憆8Up6>P1J7Լh:c-!$zRaT`HU`<6UdYjӸjM /mh(/…}V%UДH0MKO]Qd~IUQ[e93*J$%<}oaG7C=r| ի.mƆEXo M{I L4(}ay1Tݴ&htS , ftE(JZ?A y=z_p YjIn}O($R#ҋڳk_3ƺ+!cZϮs"rƏTEܴy<GtgʣFYR<똩umi, UPwJn H DIk-T%qO3t3>|X/ G+uDN+d>d~-XKo 8!&J'u|%jS?F#&qk ύ fb.`Z`x4W&{9/` ES'E8Bl]B_bknp0E~Eܖ6iΰC5Kd8 z\I %:rf| [<ֻwleWRAQ HWG/?wף*4կ.8rp3xOzacn[ ͈Se åtj0\:Q9 u3dKZט:NL[U/oj6{0EKYO9TmrF5Ⱥ[Mo}̖cI!vRw"@t _d7}Acgk>J"s/jt6ÿ =Vp9èy'<7w}T߀dT))OT@үSKU%J-R+^8v;ME uqz:xE!f+kck:刾sIV̽4`V<ɷ|NFLk@ЧdM艥Lmi_kW{P{;XBy$+f֟ ܔxo'P}K 3^E ڿ 8A5jGڱ׍lFzN%7XnDyKUM{3h~B4@v58$Z,|ң :w,B [SCR,1} Na>^&jm7;dl,21s!FëY"_A X^i֣:@ܵ)7WWxȣ"+u'\y]h]siԵze LIISH$]{o{bHP.p'w< kʂGVҪy녷][)(hjvYnmQR?WGໍޑ|5}=X<1"?7w;38ٷ- m(Wx!7 J:@uB"Mjȵ[%kLBO> ^9V;WR%7,v>+^2ژ$ndƂ&ޥ"OO;"?%2a^S{ 0pO ffuVfJ{dLu)s7EަҶFJҸwߢM&Ft*_ou: \|(ʞWQwu^θU2 x݁9Ukf6t23/ f0 ό V u?Tu7zI$<[-THogM%α({Y2xa-$Cp?cv>Yv7jTugj9StZƯ߾}tN5B;Ŝ3dФY:eP;fE[_g Ӹ lV1Wa9~[a݃U$&ya ni/IR'nsg>Jx8N8L͂/ƌ_j{&Pݜiثn= UN!CqE^@sY?TfH@ЏS}׀='lPTu|=))v‚;D Gٮߩ] :'NTs'jXC&;=W =:w/s:'h"Xe+n-v+m$˰rHx =ndg>? eYǀ1fw;Q2AW-N&xRQN^bN>zl;3{A66V ·h W]g Eڡ]d;<,UYӱ?}YM7neɌ]2ӆG@CZX~qOJ|;v$V ҊYJʫWdO19v7m4Q!VL1襶FmCF'1h`mԘ7/PKZNq 8funpipe/vcftools.pyks۸*ߌZQ$}č29ǹLGYǡIPƅ"iJk߻ -;w͵6m-ɳ"J{܋ Y~3)*%K_Ѳ'UFlh07{{a%10+=`0o/aE 45jpRVW$#C `Dy 2)ʪ`7ګAcFgR E5T+T\-+;ʦsfu{d0$UI'7fIE϶Li5bh34ͪ⨗$HJ(KIk=1s2{YW>NlzEt1Y F-x% ͠=I4Da=tTfÔaZzx$ -4W ?j 68nHxE5aFlHBZ3iN9FA/iG{yCQdxH>Al}U@VVsM+cP |41QvPKZ6y`z$CM2n/o_zU7Š#e2).0\*xp6֢0`1X2nS>6lͶдIuϗiU3<-+di)>Ո< ZL鵘0*p&]< 0Ndk;%:7&䴅#7GQ 5H욙5XZMh%FjLg&韟.h>3u9~WbR{uz❋+7C}9# p^WW2!@%HĐz1(Z+!m((JPVٺ*oR$EWU-G&b9U˘k Pa Vb_Zc2[i: $-PUqcʲnTT/l|9ZဗטMx# ӵQ:q\d:4O5Qs~mB`:YRGǞ[E"4Ȩ,mv.uku#]Sxѡ't ;JSz|GEaؔs^l8>4a_yY-5z u* K_qUcZ{bjKs-큜|EL*bSy9śx]4pdcMk%#E *^!]2K)w#p/ߋ]kS_nƗY u,%u ِNb4]k2m-aZiH1KJHn4l9ǰŒi`nvjd!ŋ [y[ukTnbRmkSkZ*^+O o jbP *LsF hvF skGlU]V#:u6nŞ( ;* WCim{_B/k6E:Vcٔzo&~RRN )wc.u (o;锚k*'EN֒3evþYyvjgɯt"3|̚].,Zc]k;]|xLZh /#85pt<{ RD͑scNj_mZ=l{߬ÀnE},2Mx^l\@nÝWZg緪g<2.: A {3ϋ,+֨d:}$1u{VbiS@HVLD;>QQ'H[ʩMi}"ƅY_gi֒e݅לPO]Wx "AI4O$Do#?!GlH#XY2yJQ.7^.d:Uia b:P5ʈ:4싻ԷtPy{7]p蟧8ޑC=^bNߪ^٫c(CY?VTnQ#z!m0 >4X}hR7/ho)5W]P֐Ԅ)'eѳ|*XEi&+9)䠎pPl S\2C_}'A-[{8>Mn~e)Oӱ,Wp PKZN)funpipe/scripts/bam_qc_metr.pyX[o6~ʈ#/&YVm&kD;*$Q!sxH]& E;T6FOj*GV콪^FJL\ {Vڲ,ו( #ie"򫝰/*FLX 6:/:O8 ZT0 ~X |F k؜=bpQ۪MLSBRZ>+~{}x|\\ d;'wo>\^?޾ ixښN&z_K亹^Ӂ1M.>^/Em=JXpnERg![ 41f4mM(U mB)(c`(Q.DX;|rW JeLR;mtժq0EYl-7F- mи#QbgrÐ9x%J3c%b^B'Ю lb-E1SP21ۭ[asUM~}wgϦi$; &$NtlZ=z34c y&A"0UZ=E/Revt9A0H2Jr5>H_)3jd-ۂd4dDY$+G횵-}B=LQXDu.u[@9<I?o0B51փ2 @ ȃrvAF@ Cv&˗jlX&zHieo{-B!eHPmU!:>eA ^(,Æؚ\esGCu4E4<*BqPkԙthH/.`!sog hM'<'$guv!e9;;ԃOZja*ilZ?QZ6eqo/99 OhJG!r*TZ YgoߗOi=aU Q䅸+d"x$XIYIRhKev6)t'Qkk& |xG"h庅3S-(f| Ó=멝ҏ}YڏtD\oHx'9qiEc0&h ۾u,2,{dUSG .4ǯS [H]puE:(=/(9௓>XcGPdjC{y&"}Y k¢))vM.׻/O[dA0ұn~XpQCZ`p@ ѼZ. WV-N "r /ppFgo~Qթ=d:N>zW`[ދ:݋ -&1H\6mP,AU; (kxޤ*A#OhlkYMا-PC)?n|"`.'˦KsO1[M&|V-rw4̶GٔG ~'ENRf'PӼ'w=4n{b]- Sx: ȇPp keD7A+x}&F'T(r*?ONlº7caZ],F+YP4-##9LD0Dosx࿲d❉Jcq6`AԂ@(v&w;fm>C0mGu0iO*6-OMC75gV&nipeA1Ӱ!gD53ʪ%kI+0#]I&ӕEP)$ѭGQ6L1l? MI` AesbEN8lU.7/&6tUrsY*@ GIK+/Ou'^>Qb$H,xxx1u v O~rq1&=e<[O|#ֈKe"'2`[lLu2UZ]xFrz9(WcTH윉sF4{=wp<qR̀}u^5Bj.]`2 ^֩ߍu@luYR*;JLzө&v 6'Z+ʮ1:~ximWC;'nfQ+Zjݵ%LjI*?AȊf舍<FN >p@&:]˪T1]Zk)uS* fh%f5+H@PcGnJUhi^Z# ձ'6>47ZUyڶ47),"ČJ錖˴,-S+JQn;劒]thF#af=u+\yKpZ5`[i=x_tDy]OӵCbXC)2m#n~jBa̗U|fJ?5 zx(&eO}|`(I {)d&Ș/)<ZiZ{EsU`VzO\a~9K 33Ptp*m00L=2O4 dz _ŋHQO!JzdPm"{+ޜ7>\4Ȍ˹wO@/x>ccBPCV+X"̂8TӠJ|qX$s$gO1!|g=tƠxk(T|Y=N?z &z/m(ƁG|❪h =b=}8}_ˌ3VPy SAAhFS#Xʂr4X|_ϸlay@&BoE>5U%k-<#(85g?yz tqJK^Ono 7X[]w5if;ص녮X19}$>FS63(P챰ITٶ呋="4!Z+oLq [Q[d(#gyxY7e+O)fjP+PRu\}NzAo , s) ,u+1 GM0چ4ܝ-waX PFh(º+"xCU;Pzp8~fzmg"uho:` -]k䢠ා1+59&s̃k]@:T7#"[yo`C?VoE\]y’ޕ~g&$ɹ|.ʛ)JWAO(+چs*7E"_)P |g4v0tL9՝?H{  mk³d| ` 9rLu k/[:G*Uwp l]VƤ3EKڎr`sRrOv{d7}ldodoGd|d;"E?E>MLu>[=BCv1$WnlYj>}j?k\em {XekKtp2*`Vsy^^tl@WXϫ1 *@)u󁅸+?:Heszp*ezvzhW~E1t! iBm81 mu94~lySkXTsQdO#ǺfA{UE|O{PJr%J6P AP=~ @Q =ϋA ~[҉c?&5 |ݙJgcC~aZHGV./7U۴ne1QGuqpN.)ypRݧDZsr34d6XYu9V?0]5̎78y.ɶ.ݾxIqz1ui8cDU/::&V}VGUQakbI҆|XGS>؇C~ڇ!=y4ȅ~\?M<{:.(,sbIgQwD1(M=]|H5KZ隌ڼWfDXCosyk8Ca9ɲʯJ@)BW*֋R֗KVa//XՓ( 8+΢lG<灷 4|I{e_ydxI7zNj9#UFܩn#{k_A:-=[!V- trjK՞[CDAmfRNR bh7e13 w~*p2 M{j޾ɢ?/M˸Vp3tw l&m)'8 ]o#Rꅴsl̼굉yYOR=Fl;|ױ&P`P &a %Ip/Bn^.lw}aI$Nbf&qeIʭD* TAͽVxU?2E;;fD Ҍ) ;C>'~_.2ˣlad$㞯s8Ӌ>boT/Rb+C0J3Zav8;Uof6-U$-FK]߆Й|6/au12%TUffiuXgd 0;2lqr"֍ye[CYhO[:4SauwT6+Oz K){>+u~"% WcD!DlnQr4? c#@aE5].*(:kԐ4o4*oґ &,/!50gD8Oqv|2z9͜Ɋ9Y{"wO.Yyhf:{0O+lpFh٢m {kۻF\=3 vD*fnPqѲܱm3g Ƒm :4, XZr+E6e2ϭb*ťFGVjb{[.y\jzN+~p#uZtsTA4j-]Fа*;S,XQ~'PI􆻽N΢kR)5B%]bT$S?mA?[-sqS&VF7ě7c2-q5G63cDЗa2q!AjZ(5t\&ݦbo_Ϟl2I4y9aJc=M~z?v;|t6l|i=3g\OL@?o57F(^l̕;tmqL+9jD-PtMXI {@J>fKLd_,Bk8Z|i}Q`fh_B-}4v@3 &PCV>!xL>FDW?<#훾ݎ w;o+셊`1ߺF)375K9X 36'Wtu4DZ./V|fоdQ2иnY0iϞQڤl̾u }미^2+|u1em"t[Ly Չ8,@ta~כ؜i8ͱHϧϴbUh'sV`hW_5~6#, ގL3Œ_,[sG7͍7^"GnGɮeUrՈ_[وJe)i'2l0Uj+̚KZM[[>6=ъ*9OQوnZoܗi}`QQ[gl-os̟53|:ElV;r w'DZQ'9C|BEDbt\.;EϪneg/+L],c d'fwDWE!O歋X7Ⱥ [e*fd\o-PKZN;dfunpipe/scripts/dep_per_win.plXmo۶l3ǙűA"u8DdQ&CR8Ê H+9/"syRŞWr@,r+J& ^|8<ILrhLEHispx^聼gP"9%X8]{f"Q0;ϟڧ-BPA$4&>Ǩ--,ٓ4kpxdS cD|3E1K7W)nHV[8"&ǚ>xrG9>͈B1Ѳ[VρW[f+]hI| 9OH8.+FYeM6;$'S ͣ7VEOOv̀%mew4IҜ0JoR$~^5G,SI8 Q+Ɍ`,{'%2S;án4zIA"+n18|c[Vz]Ѿ)USBưjF_In;ׯT..VԹV5KQhea7ST1[wuĜ/DB7y̥5prL(C(ތn P8Z 88MFmY;Q]<=XH/kǛ˫O78+C<0]MmuZ;Z<] ba:hOu;0QY[˒Z^RJ*#eKw^2 D?X;)SZ&Y$42lOJ}@% @u(UZKǢs<͛踔9-능VUl~k_f?nLuro68T')Nu=,n#Gr4]Y*UΎjeC޼7 pi!-S<<eG޳{'=Jo6fxYx~N*_'7)M׹샎bzB,dE&ykQ>L9ekI{^gܒ ̾X:SR\}hXeP_цuCIu ÕjRANܤݽAϤV-dC0e"H. +h|(e C1޵V_IED5vcSؗCAh>4m KAR%zjy/FN6 ݬzA_łbϊ+\&u?j=iy Q \%1-Q淠[ }eC^ʤ-)쳯܉+ ;v8z’Hh^CGz2 7ン˼!*Գ\IuT %$@n{aA=['ڬЛ(rog"98iٵ> v9X܈ِ) f&HO]M f]͠p T=g!\d4`N8`kg5~ ,eڀ b[]l gŶ))/Ɩ'rߺAU`OcRqfGۨ41aBFCFKG(Ns1 |_Ǧŗ!qZLˣ̑c]8z˅Ę5='еԁ:SkziVŠL۶7yxͧ`j~/'?0h#DrDRë/ H ڏ!Y-"8V:z]w]'.[&.&.]t>nŭ'{<ζ`6}6mv${&!⍪dSUX+T[Өj_f˝%6z/<2T{: gvm6g{8g#KZ_-yiPՂᅲeZq(PKZN funpipe/scripts/genot_concord.pyo0WڃSuZ a(iWˍ/Ebi;Mh^w^F!D ָƟ-?]L:+G:3@;j,ىV@켰e'p:їl0\iܣ3wv{-8Z~_>֯7z߬lo'j3YJk 6!PG/ތ4cc8a #LY߮߱cRBt(]| OjoY$OvZ 9TTs:'vq8߲QHS6(@8 1N 1<"jQ~;O3U5*2eՉ )9wΌ&ųgYOtt:Wn%LQ4WXhf44vG}p77龤]0M#/5B%|&FW̼d͛yݲ77PKZN\5Jfunpipe/scripts/get_ref_path.pyRn0+x8R=q"E1zr b-lr.‡ $-wgF G.DM@tf^gYR T`{#C5R~Yf/)y-P8DPQZ Q|[1be@ЪXЏ(b-F` s9}~a"]RZ&uvDi:U1%xyGtGuBD~| ~ݷ?Y2xYg{8o J3=jZvժ-PXUCU?ՁqE*5yiG/D$ !zDO-PDlLpd01"3-j`ЍĎzvBZh͒G&&Go@C碓b^B7כ  ifx59Os]5|q[xojIWrR .>!x<%*Zy_8{N\t 1:Ci|iguT,(i<9TVEboav&TLzdKx c Uv>nҼQSPZ -Sp"i/n)JsHHܼa9{:v/ko Xb<ЋBbXYlOX|sD)LV ( qGj.p0_tF;>rL^7?2yN Z~^@mK[O]\-g|*rFZ2>RMg67 WYB?жU%G^5Ln )\\jYn:.y`_;!?0ޡ vdDloN +rw}k ]UT v#rmn"]|#\=辱 b[>auibaVF ghƌePwMw*T8O 6>o|~i-z a;U+r_xn8-䨞>a'8MHhDqݸDWAÔFePDn¯=J@u/ i-l5_$I]$PKZNaoQ(funpipe/scripts/pct_reads_per_species.pyWmo6_(͊b Ѐm]CW C8HtA&5r=RLJʊA,wWV\2qAݓ9IzN*T=tTiwT4T#뚰&GiVG%Ϩ􆷺0 .fjհ#F))i2.e 'B?"V8qfPQ*r`}ejC}k4[RŻ,/ur;DѱdC~c@xfR!s6SAdnf>Mv3j2#O6iiH WZ2ɆceERʒXnwtEs t +s8جD`=Ig2j-q4'aܶ;h2䆝u_CT&q|#ݱ3b\/(-ٛ9rI<0+?@C6$͌UBMUaY$<=E3An483fR%SYl`G1-lSUJ;HE}8 sѰG?N `znzԮ #aPf]0>vKiS$wd>!_yW OkνCrORҦ!A<@2Lzu=fS]qHPCo|\ \*ێ_&̇pH{e) {qFD]/?2uʹ‹|-,e [$gY)=m',pZW؀  S2n(! fm@^`&<,7x͍kkl/BXeN%{U:N4DPmU)9r=d=}]W΃/ˠ-xe?9dЭmv/X}PK@aN"dK!funpipe/scripts/phylo_analysis.pyT[k0~8kv6mAc[Oǎ-idͿߑdlTؖ;W77ޚ7(7nhZem:D \~k?­ >eb8Pvz+7b5@QFȦn9Zn/A~yL#DjEа 7KgqމNȺɲ6æ@ !w%hx.aό h)1*.Hi9Oc)K3hIG7h1d r.$cyr5א);[ƓA[PbQ5c%Y&p#ŎjTauFy]/~*QX&/:ܡG㱄5?4CHU~ZucHG-5Bb#Ybx39~=V,Sq߻jq[/nߎy<oOYqF>=~ M~#A"NwT)}N '2B*+TB7;>-["SPHmA1ð@F7%0v0?L/{e5֢tK`ow UG*);9~|⦘'rfBXMPKZN34>funpipe/scripts/pilon_metricsX[o6~\M2,t0h"m0hvN;WI3u.;KQiwGG݀|O#QԤQI£䣵l*Ҵe4mESC+Iز h4ZL)k)VW#IZ^.lF&D ]DQ+. K3em"13Lߍύ,芵BR|IJ~0%ìD.4,v@ܝFN\4ܶN<2&jⷨ&wOy-J~NP> }ӓQq"')ac:k*wzuMS='骩O\l^:_LSu]wG40rH{x6wS6l/ 'g>umxݘfup*@{ńG 7\p$ےUX5UنSrN8 K/W,g>łBs+^gY5 ؘ$'C4L1GrB`"L@md@Hht9+"ez2( tõSElbBs J'UyN&>PeO Ʊĺ UU GXmU)ŻUA (qKWD7~´"U ^#~ 4uAnl[3ρ~k-,~eH 3SS!br<"F=yȌA8f x]B`/ybO 5=@Wt&^!Z '2FS C.':{$k5huړCO6z𝳢{U/ҳiwa>f(^;Py#җV?wnxZNKfJ.Z;86fxb@%bEfd` G !':)}Һ0X 4hS~5Y;l^@7 bS4ahAŶ*kflL 6K3oՔ%Py?Y`}'=zwgumܾiv?pQ,7ޛC?~{D'5q0pkcf9:޵{N:A/`aD|MZ/xssR:݁ռ Pd6FƌVkA ?+XW_,DcIk18 j[ULB8tZXK&)XLKٶ3{uwy&7Ywӽ8"2; و.]G<6r]Hm][ ]$~SʍJʑϠWL(QJגsTV[{$.:L8k33(K=]`B+뒎,TœPKZNcGDfunpipe/scripts/qc_metr_plot.R]O0+za- GbdI"@ԶnMʺv;1$ rIOSXUnBį8=QOx])*i|#ͅT #fJ"EQC͊y5g=xN:un)_%0ϡڸGZ-.%‡IN9؇D EU0ޣYFsGI53<a_߹0L1OMIl$6`! nyҘ,nmnBjnmuO3ۮ-:`+K[u>h+ PKZNveRBfunpipe/scripts/run_pilon.py;o0w $'A24nEAPQf!4N{"%YN‰<}yTxkR*$8bv2hf,$ܨp/А+N-Z%DU4L.I8阐Ɇ*R{GQ4'YUg$GV-b?[/)%.FM,>x&(35b`h$EhG"gi>|Ԟۢjm(~}O|lFUM$i.a`c[{+YCyaúMbPKm:K_l7]blZI1fLi<IJL%q6)0 + H:Fh8E`Z|tx^EP9e}cvBI־p~5A]&rg ezr ã|6/K6Bxx Fy35I_sApeuyt`ulCRhAHpRiaaWX3PDJUQyG Ҽ'燕8IQ\yӑJB]0m -r>u3Ԏ&wz GNtl+lt X]`ъ2V|}O ̱YHgE7༑#3þ b{K'Jd(Mcg0g34Z^,PKZN=+ funpipe/scripts/run_ploidy.pyVM6WLɭVۢ7:lShA[PD[l$G I} Kui̛㛡{ >zy;[=v9m=gŋo-.MKn/['9(#оN|\/feW:}Уv\ru 6(f-[gD3K\3L;g$ 7']q7X`=V0"_Qzȣ/pqVVE(= tpCڏpXe&>`0ҋQt{'6qʑ> 8~Am#Tp^jVO󠯑?V8wÐyAfUn:;=$-f,rR.1g>cV F5RdgPگ)Mw3,šS"S ixriƞ\#V|',R1ؚ?mK}W nC]nÚk`t$6,|]zX.l9Dj_[oG]PJO0q0`zHBA@ȥbHe!ei`Fh)WJVMmubv(=@88ug]8?@/&Y8iI p! p^^z86A^6x5s[qv.薊^ 1?T$,M(~AMa u@?BGF*]>ɬ׼.VS\6ᛨxGYT2_A/mFr7?fkiO Ç;.>C:N[iK3oz ܍x}Jocyb5*TE^&*vSQ8\_}1-z_, ":/~PF{&-{K_PKZNY 5funpipe/scripts/run_snpeff.pyTn0+@Ђ"ŀr,ZXB"Y.F.'NT{Hyf!V#'s/MUE eҧbb5I4 K& Ho  fvHnfW7B&ķpRFIr$M@\E~[JpP2MJXYKěy``~[ƥ5xn}ʒܓY0XDba?Pb!\\dPࡀ境M6!=aFPOD~lo{̹0gڧ㝷>S/ʜ()I =.^O>#E(QH/r848s\3 *8/P ە"Jq:aI7JVL8tD:졹q ɊY<:pm2% Յj6EGr⠀B !<0SWׯǻͦPKZN'@funpipe/scripts/snpeff_db.shTQo0~8HIڮE0I &4P&Ԑvմ9IGRxi||$Jl1"d,fa;;m:2z`1څoܰ0Uup n` u,BX7;:x~+h,/(,RexNz0d k/Fq R/ZƧ#JizLUѩӺtUf1fhPeH0),J<*HkSJUqeSF_oe­j[͛luEn6frӴU# QұP<WPC_X"MsvVBmvFChN3,Zm,ۤNQMFNC0Xw3t58k1PH2 2d$^7e<~N/o>U)ucҁ(O{f=J7x ̝8N%MHatEtwD*uF|ʩ;#ZAVq@#f3) <;`i<\1RAda&3!}R3Mz 8]v-Q\O]KO.x~PKZNHs1 funpipe/scripts/vcf_qc_metr.pyVKo6`jYIh hڥ#*Im);R> &9:j{5ir9="Y7>zbsz͛t59SO5޾1,vmMlZ\beu^~UЪ.)hߧ?I8K̘Wa[4.a %0|i,qOq"fB靃KB]RM00VJL+0$p־*%ǵ Cf@J|'fIrD>ou 0n`Ίh,/kg404yئqFS$ė7;8.HwՁPd94J~; |md)~ 7@[ oWNe}, Ɂy1F6Cmg%J1Sa ͣs߄ȧͯ&~|)tFڵ8d,Ya[6Wϔj>cpzʇm\2p k(A D P<]d8< %&[d#i`Äw5<#kH+C~2=`ߝItU06 9@  Nal a˥rcy~z> c(}8f*vdq ,PY?ZqWCncwQ"Ol\~ PKГ}NYm_d#funpipe/scripts/vcf_snp_to_fasta.pyXQo6~ׯ`ɋЇ` 6`˂gDD$R%$ΰ;%KVf/#V&w}w${u #.fFɬNRm(iJȸVɒ|!R{駟u\KÈQqM%g`GnIrJƜ14 5"ɕ"Rg,#m-=kCdex Q1"e g^}Jɴ.0p)3iL@K.x ;*r)F0.I5L@{ n`7+^49L[J*C^75_TU6F/ޥ[#eѪ叼 *(lw*ؕhEbe kQ@`\ nڱZc$; tG .bxpA̾bKm6%}HhI4-+ Jw(E^%uP^I@絬^(R#$0Zcn@HiQ#¹ [mi]yiȗwkTⲩc+7GrF\@(]6NgW d*N7(M6T3ZϊjͲD*$D +njG /dL|MLHtEE.i(iX[f[h EDr4XO-LŅoŷWk\0 Z嚑O{>bLB*+[ Xx W`E2X#HId/kE6XGWmE HOTbgs`ɘR񽂬EtfFXV@=ZU vmgx}}~)b'>XVҩ93$I0p`%8 I6!lub YȘcY+l;-pvG1!=TrM^Av«Azʎ(@ iHt Ǒѷ?moBRRu ]BVdE%AołۊGadA=;&j.j6X?C SV֣Cʪ@FsNs3$NZ8\Ɨ䟗!OpC[q⩶h]7<Ѻ"O3H5#ݩ~|0!h< .605 4S_ls3Xôq sG̽V`{=]iX 4Ki[Oi BN=6ׂ7H'=tNS&O&tDIJ`&_q` mKL4ݻWLR3,`psWkrAw3k:#YmLJAY >c 4,u%J9aHZȭj'ʫ'4[Boj$K S@NºU& :#MG6c<\*eeӔۤVSGϒoW;>a|qq,~d~eؿ;dwWG B50{亾hVoޯȍ$ ;@cFLFڄRi:/b*9EM$K|^-y* c,7yTFAj,._ZFW/ #R,OfkN֢o1Oo-ȧ-\J[L1M+Q)s-a:vMfkGk)$5_"~J| fF\Ugg7FI,8ѱj!3 L+h:Y'QdS'`ME#`:,ٛ;^ld*h= a@cz[.\-#yڞ:3oI7 E Q"cu[ AV@TcUi;4|P &6ˠ&U* O pRPijUeyH{%vjUi(o7Ȣ#jİz bh!볶NO!_H )^ŠCm:o[!'jlT: 0*ȫPCq\Lȃ:"\}wثUuL:<0Rv ؠoHd蜗Gu if!]llӻV^Z~5JZo($V/z)DV=~Y{!"QZ(D=BJK$kc )'JA7~y! "^& ``x0ڒY*dx7 ~,IښI@5f;Zpn̡@Ac'$p{O.GGzjggW#^,;7INrZc0Z.H_cj .˞&hgz 1?A-,^7o\)n!ds?CJ%Gu'k\mb'8/D7kBa CX4 nIezEi F:-7/ ./J|H  h!׋v^=Vӥ":>ph"iѿ "Ac]5FPKNDif?QB/funpipe-0.1.0.data/scripts/coverage_analysis.py\mȑ_H47d`Ͼ],dPbK"ez7knswz$UOUW7oswt:|RͮjzPMWAZŹ`T jg mz L|v Qa[`6^3AO.ئTIl5 `[Uvݕ0`U[4zP PS]Tyv~'P={ j@=mP1skTw S1#olN Rm3jZUÿt<8jHIv: D〧᧴; g{s4h17!^?]6+&.{GLrsjXa PKnTw698j8v +2#VǺ;#=4e WuG`9 VyugAA .^VEAl#=nC )|[IC(Z2h|ݛ +>Sewgdp~Eޱ_''6B,pa{tձ0qBHh<˶rtpmyW Z3Q8c]i4a& AKx0 bgn!ج=~ 94 LЦis92I;r.߀|yw3 ;9l8%8#(EKD_ 8`"N1-Ja/ 8Oy^4)]t@w dܰgah§LHS <+v"d@-@Bk# `ҏ Q 君+Rq/~!-`觇?7'e&S$@fO4]ŋfCZ 'GzcBӬ^[ȗ=rmdN;*r"XElkTi|k$rvU&?9&^!i2/z4xp%' Лz! 2 U]nex@ݹ43'lв:VWhܦ*LDz┄:| g+i KF)FoW%-?6y]RZՍda 7B,9 \1[kY./gZZmzmޘ6[Z5--d([\8P> ^֩ߍusL6Mu*Vqnw1I|N:k.؜i+_5'K.i䤂,ʠ=Z}HERKmVNB{oEҺ."=n4Y<9b,O39βu׉k.<&TK0CKp@#V:b6|QhV 0m+=rSrBKR7AieTǞDtkU5Z;4Ih^qoRUYD-i-䁏Y [V1(wսr߸1H'xOx 8" U]ZI4:tee~%K][͚7ϽZuC 2>>xrNlt%7^ , 2K{ ` ąB:m[!` 0+ee.0zx%{~B: v86Ml!ab(_7I{G&2BE:ƑkI \*[:8.V<_={خTT=vz;,`%=6!N;46kt8,Kǃ_Bg1!|g=tƠxk(dk_n=stw6X=pcN6 n@y݊+c#[S5vBX.!>r'ccaK,u1VsxSF٣&lCg/7EidT#47eO9^Ey3E* 7әR/:NeRaNTjl)dodoGd|od;"]?&>ٛw>[=BCv1_$XnlYjGD(y p/hkf `-=)OT3=ϰsƒct"'8jJ\buˁT;Alv9e^+dezvzhZV~EX0t! i!6: œƈ9* [q1/Ǐ-ݝqϸc }5iXw huo4י3՟/ JX[w֦PdsgX2G{Ku,DoZL*5zgT+eA70$ʴRIGV./7U۴e1Q'>8$DהRލ%VtMVm^sH`+3Ku",ġM"5wǡϰdYBwX纒.~PrÕʪ*r*zV>8==@(sp=NٰrxAR@Ѵ2I[t NɮH] &rpZWEmuOx Qo@h=ʾ\7lqKoZ*In9#.QAWNy =sڗh<>N dϖ`Uz wa\p֐3UR[T焿XAv3,4{tP!ί}J> CӞopG~w}5ênΕazߤ-Gum]jdY /%KFfe&9~g=I zQ^ǚL@IB'I($P y4ٟOfZ'IVmDcN9&kaY:AĨgMke͍1,z߱1{'g4H3F0,9޿ u"?Ġ{uv$yzqGLAT j|%b,6Q_Њ8ηSXnoĩB|ٷn" n1]z*]ȅ䡳bD{ylt9o @yZ(r(t BFSY8Wjo߾ӱb͗!Q!lOsS-z4T}rpdz#y׋XJXQs|DSSQZ#vc-Ґ-"&}am$H)Ux6/au12%TUffiuXgd 0;2lqr"֍ye[CYhO[:4SauwT6+Oz K){>+u~"% WcD!DlnQr4? c#@aE5].*(:kԐ4o4*oґ &,/!50gD8Oqv|2z9͜Ɋ9Y{"wO.Yyhf:{0O+lpFh٢m {kۻF\=3 vD*fnPqѲܱm3g Ƒm :4, XZr+E6e2ϭb*ťFGVjb{[.y\jzN+~p#uZtsTA4j-]Fа*;S,XQ~'PI􆻽N΢kR)5B%]bT$S?mA?[-sqS&VF7ě7c2-q5G63cDЗa2q!AjZ(5t\&ݦbo_Ϟl2I4y9aJc=M~z?v;|t6l|i=3g\OL@?o57F(^l̕;tmqL+9jD-PtMXI {@J>fKLd_,Bk8Z|i}Q`fh_B-}4v@3 &PCV>!xL>FDW?<#훾ݎ w;o+셊`1ߺF)375K9X 36'Wtu4DZ./V|fоdQ2иnY0iϞQڤl̾u }미^2+|u1em"t[Ly Չ8,@ta~כ؜i8ͱHϧϴbUh'sV`hW_5~6#, ގL3Œ_,[sG7͍7^"GnGɮeUrՈ_[وJe)i'2l0Uj+̚KZM[[>6=ъ*9OQوnZoܗi}`QQ[gl-os̟53|:ElV;r w'DZQ'9C|BEDbt\.;EϪneg/+L],c d'fwDWE!O歋X7Ⱥ [e*fd\o-PKZN;d)funpipe-0.1.0.data/scripts/dep_per_win.plXmo۶l3ǙűA"u8DdQ&CR8Ê H+9/"syRŞWr@,r+J& ^|8<ILrhLEHispx^聼gP"9%X8]{f"Q0;ϟڧ-BPA$4&>Ǩ--,ٓ4kpxdS cD|3E1K7W)nHV[8"&ǚ>xrG9>͈B1Ѳ[VρW[f+]hI| 9OH8.+FYeM6;$'S ͣ7VEOOv̀%mew4IҜ0JoR$~^5G,SI8 Q+Ɍ`,{'%2S;án4zIA"+n18|c[Vz]Ѿ)USBưjF_In;ׯT..VԹV5KQhea7ST1[wuĜ/DB7y̥5prL(C(ތn P8Z 88MFmY;Q]<=XH/kǛ˫O78+C<0]MmuZ;Z<] ba:hOu;0QY[˒Z^RJ*#eKw^2 D?X;)SZ&Y$42lOJ}@% @u(UZKǢs<͛踔9-능VUl~k_f?nLuro68T')Nu=,n#Gr4]Y*UΎjeC޼7 pi!-S<<eG޳{'=Jo6fxYx~N*_'7)M׹샎bzB,dE&y?~H:hQnc>>lH>mʮl;g%dy+!2|\&6Bn]tJbM @dR Mҁ I)I/ythӀ2աmN(ِ//lqbpP<Ȧ%/a.G>ewS׬茡G&]7RթFo tLX {ݐoRO.~T.z\Ky?!GE8T/$ۀdMі.iAeyNgSRޡ׉>#/ޅڧ-NsN6̮%`ZM_θ83OY)>{l^o"~maDcYh-PKNg3funpipe-0.1.0.data/scripts/filter_gatk_genotypes.pyXo6~篘nul_#tuTM{ɥúM{m."(7f[,pGEE6rV**$n' fǷ WԆ($єϡI qP$%m] f kf/ #kF}eua0%SRmKQmEkEØJ#.PU0ݐPAJMѣ@k٢0UOdjS aHA#O'’$o& BA#u8g&r+GA'"ٿH4W̴WEapgfЩD$X_/aC&&jR#o`NܤOQdU"h. -RRX:@xC]k t\$+ȨlRľT DKӡiK]*uD-68m@m$\/<H ϊ+R&aa}7ii UyM/J͝VB Je[g }Lʖ3I_R돾r'$PD$.ɲ!D;v)e2o}75ycTzgHXJI@'"avZ㴣-)qk{,N,Yma03R< Dr\qӱkgG}r賷 MV!S+]>u6X~/PE!bxx0s$3\wE'# laCO}c][A):elӛ 4JvmVS # 3AwG@n|6 2alnN Uh Cy"&Zqz<.@HJD (pgYX74"ۣ;#q‘EM$}1,>EguY&n p92?:.϶e٦x֝m|[Rml9y~ꜟ[7  B)sHJ=Nlufd0nR"Zوy蟁} E6)0qP+д}0{X=+2~yش79p|a|@ ui]uCvañjuc"&yI%6a}nyuN:ibJ 'صMԁ:skziVŨL۶o<]5[/Y,>Ƕ^Iޣp&,W_'&_-{Ip`j > f}t>].rՙc} ?tU8<tl8Ht8Tt9|[?xڝmmb4IOpMC jZ*"H^^Yi~3A/}VFR \bFd.cTc= KZ߽ZPҠnث/ zQPSSPKN>+funpipe-0.1.0.data/scripts/genot_concord.pyk0WHdcuA`eBΎ-i~Qئ)&D ָƟ,?M:+G:3@;j,ىV@켰e'p:їl0\iܣ3wv{-8;ο#RS mALpBUj]ëG7ۊFN&^R(J+,i4Fk;#>ZBpcEt_ӈ.t!^ĺ|173/Yfes^l PKZN\5J*funpipe-0.1.0.data/scripts/get_ref_path.pyRn0+x8R=q"E1zr b-lr.‡ $-wgF G.DM@tf^gYR T`{#C5R~Yf/)y-P8DPQZ Q|[1be@ЪXЏ(b-F` s9}~a$:/funpipe-0.1.0.data/scripts/patch_ref_contigs.pyXn6}߯`k @S{lC%JzE$["Wrzpΐ٫I_~R#IW̆T$TtJѣvh1jvPțMITBTxCV=Ղk!Nz 9 o~dD3"O eq`_JAƕfzԴ(UC[TeՓ2:3tjUjlҎ^>jIj0BBZ"٠CabEgZ@t#u#YCUХ鱱7%-LM N򣏇 E'8d#n w%=9Os]7|q[xojIWrR .>!x<%*Zy_8{N\t 1:Ci|iguT,(i<9TVEboav&TLzdKx c-U>nҼQSPZ[ -zSp"i/)JsHHܼa9{:vWoo Xb<ЋBbXYlOXsD)LV ( qGjp0tF;>rL^7?2yN Z~^@mK[O]\-g|*rFZ2>RMgw[tU` Ы,O!Gs1mv`ɑWg [4H 9ZքzKؗA;;)pg*(3ODA6D-_Rn"fQ|xLsP7h9)LZ.ݥG'iOfJ6}l) iCOyiLJlH@prܙ `X.TYo:xV@CUV .W}^M$\e7g7vݝTl'l.M̕5ʈ! ܘX|Σ)R]{5 0!5}%Ap?0oSrQnx-qTCRX^',pBg1ڡ )Sh1?h@1h[ȭ_G ԴePAtS!4+D#PKN[ 3funpipe-0.1.0.data/scripts/pct_reads_per_species.pyWm4_azlH $8 'K5J`;{7vN6ZmS{<2gm6Ke~ᕪ*vj= krV|sRf0WZyߥl?e\^I$Z^ xgy xR)Ts9#nR ?s >߲]K!5h}oy$NJjD1G? RCG Tq >-`Ѕc1YY൏hWB &(n5 }$g);x{k+ed ݲ"s)HeIPmI&Hz9׫JkGfKG^ D;1%-␆j I3yPnsknXAV%πg-ƿ@ ͱ*ڧYxG6*@o?G<v|M }腗vv&U}G? ZP؀  S2gn, 1 fm@^`& <,f0t5G݇C6̗NXe%U:N4DPmU)9r;d=}]W΃/ˠ-xe?9dЭMmv/|PKN=,funpipe-0.1.0.data/scripts/phylo_analysis.pyTmk0_qkr ](T}NlIK$;oFms=w; Xl^B/J['~~@փvӛ^]atAipa<7wpy'#-99uhR(qMȦ-.çBJL|`/\ هhc4α)YrOk)30e_gى M} s%烐sSMZ=I=0d)[tKj[pc\RAZlorqcqmk)kg6;r?*).v*U;t`VK2@[mfO?LZT Bf#EI2џsFc)2 7FaNw`zuA#zd: I5ҺR5}h6z :(}+6'֘2|?4BGwԙk}g2b:;Y4;=b,WOh2s 㥐ǂc2Cc\Z1MQ?Ymɖ= rmqƴػZ_")GjwZsT(l9#Nn}U.y& PKN%|K-5(funpipe-0.1.0.data/scripts/pilon_metricsX[o6~\H2,t0h"m0hvN;WI3u.;vz|R@/GjIڅGGkTiu$h:V~$i%6W~~?eD;h*R-RF>_<y(^3RgP] *(3Pg1`Wa|:Vǻz+k2~t$ ,z"ҁN*&},%ɎHVk/ft0{ .U$I*"jDЎzAh-xY4Um)t2ӓ(+N|>\ٌLދ1HV-\.Au1fږEcg>пQ',芵BR|IJ~0%ìD.4,v@ܝFN\4ܶN<2&jⷨ&wOy-J~NP80E15;qA=:y̓tT'.6//?yJ)]`e;#~Fqn zp.pр9a@\_Y7qO1Tٓq@2nq@nSu2r?V-fldJ.GUP& 6r 0-a_g]?ffs_j K%4p9qT~u1Ey22cYx})kP` nޫHMO3bݣWnV艦c A+E\yˉBZ gZ!~qt=|(x%`U(|0"0 ly 7o~0Tt/$O%cSsY ͦX(55zXф,c/bom k:7 C< f)T! wۢW(Ѝ5"MjttF=ڰ5°[5e T^+z@I)aٟ}]EڡG<2KfЏIM ZAwN k9XX"zӆ?ܜTbsw`5/C$T"$*8㱑1+p7FP-<Bn XRZhnm p#V+])t V038k-ޭa{^ ci@xto>flAB6K M\ץ-Rl΂~p7:rRbr${ gb)JwҵbK5Ng {aO {c5 b10gPKZNcGD)funpipe-0.1.0.data/scripts/qc_metr_plot.R]O0+za- GbdI"@ԶnMʺv;1$ rIOSXUnBį8=QOx])*i|#ͅT #fJ"EQC͊y5g=xN:un)_%0ϡڸGZ-.%‡IN9؇D EU0ޣYFsGI53<a_߹0L1OMIl$6`! nyҘ,nmnBjnmuO3ۮ-:`+K[u>h+ PKN\&5'funpipe-0.1.0.data/scripts/run_pilon.pyn0 ~ =i :mƦ HrۼhvH?uF$3slm:L-2`T 6(h5gau$Pʤ"$~V,PTDNPy~UKrbU~.Rl]Ԥ~grާLpMS]%Ä:xt`oCRhAȂpRip[8-3X,"`au#ˢ, ?HpNUz?GqMGJnUƸ_y& 3²Taj`QA; hy8:у3ݽԳgǞ5EnM^ޝx<D w']q7X`=p-Zza3HE?pgG'^AcVVU(= tp?Bpd.>ר`$O␕3} R]ya~ Gpm?ܶ¹~ 2ov$!i1DWhEqN߾=D'n aO; :cCHUQqnWp~n8Gekhs.FXdv`XvTQOai|{1ȟ0P'dӌR@K^7w[|ٔŇ].j=Y~>LpxW04Owϡ -8ąB6[IHiKƞϣoz LRQ>V LXF;p"'xic'z,1sS=tz'[v5=)蹰#F,p-9ڨwvT.Y~61ގH Ѻ1iADtITBʏnKL)[|ge-I =.^># 4#t,CF3ա83j, ""2m ɜ Ur])¾l;t́dCNSK78 ⊞e#j~ A+SP]_fStk7!++ (BP#L_ Hq:~l?PKZN'@'funpipe-0.1.0.data/scripts/snpeff_db.shTQo0~8HIڮE0I &4P&Ԑvմ9IGRxi||$Jl1"d,fa;;m:2z`1څoܰ0Uup n` u,BX7;:x~+h,/(,RexNz0d k/Fq R/ZƧ#JizLUѩӺtUf1fhPeH0),J<*HkSJUqeSF_oe­j[͛luEn6frӴU# QұP<WPC_X"MsvVBmvFChN3,Zm,ۤNQMFNC0Xw3t58k1PH2 2d$^7e<~N/o>U)ucҁ(O{f=J7x ̝8N%MHatEtwD*uF|ʩ;#ZAVq@#f3) <;`i<\1RAda&3!}R3Mz 8]v-Q\O]KO.x~PKN$ )funpipe-0.1.0.data/scripts/vcf_qc_metr.pyVKo6`jYHhhڥ#*Im);z 'a$'`wJ.픶mǴqL\ð*:&+fvbQkՒxe+ 0pt:F&[fFFh&`$V:Y^6g48ׄ4yЦqFS$ė7;8.HwՁPd948E86 mՄGCf+os>Z$jcYQb5?"3 DI2fM Тy:P5x=NowB'?{y]CuƪbU%2]gZcNO}._^#S\=|tŴwtj6@\sYŀJA$ XVҩ93$I0p`%8 I6!lub YȘcY+l;-pvG1!=Tz!  = JTeGNF|J$DyHu P{^ğ6w!)NJ.G!+" 7bmţ02̠^bd5,r|!EN~)+rsQ 1e p \9v9uLG'-BeAK|q pKϫ|&~tx-ZǍzŃOo+ =Ǿvs;R{HwL2ĺ#E LF͡y"M G+0mxnm(?s5@+!~ZA0f08x+q<?A r*d7l1~-xQtBC'?eDk"?OA0fVPv1̈́I!ܽIxi!5?w6*.ptw 8 3Zaoʨ$徿 ?@ÃjG_XlZpѳ20?оސ]K>@'viTh+uS`9+C^ƚ]+?d4m޸DrT5jpxWAAr@k#%%,O~ n)_H? ccM7.-& ZչY6O{2uo% LDM$[7'tƒC,ҿPKNHwu.funpipe-0.1.0.dist-info/LICENSE]RKo0W8R}V{3)ֆ8rL)GUQlLvGwVBC; X<&?Exho?[Ieǣ \Ύv Ѷ)Gkx)Dfx.7Hp3vH>^hqoA>h}s>!Hz{-b8f\\9hC]C)-y{wt7OC g Gߺ=)]RhQSŏl'ݴCOtx;QΥI\Hq@I;aZ'&R5~h% ?x(tagoBY'H!;ɏ)P˅0AP)"rÌXRk X -ek*{̊u.g# nTK 5ʖX(ަB8R)-uTkUɚ|( U U (H*aktd*԰Eα9 ~PY*3PYTBkWwYrj_,)F&KL1Ѝy LPr&tNDȉq%ЩӋ 뚿BY\5)}) PKNI" e funpipe-0.1.0.dist-info/METADATAXS۸fZڛ2h˵r+ؖ@d$eKg\Xq߄6RCvGC6JV"j^. WC6bRҌ<_%91yTLɏ>B+>܅si4NU1j3Y+mmŠ9yTۅCw,s_\Cv\+=>TGMV?Dj_~wY{EҘZuQ'* QZnaE4.X)!J%KXӐ~q΍3)`Ҋ2ՙe*pȮRsp):]qUE+h\bylW FG_بZⰡ3g5/ rg^k+tGů8&2-Vi9&)y'Uc.a`ϥYDⶖZ4vȸW\>ϏT@Il_/*^fcUd[4Tp/tJcr @@GVyKAFlx2Sa,ZAl:#MQ L9/O:C`xrEL!ɬR9Y{qP'fg vyU GxqRUs%ﱴ6""Z2:T"%|8rsRaVзB^crjCxɂ̅@-UlSKa8qZ[x\y#(D'|p\|NLTo; y =B0n8Gx~ <υ? %`x ӂ2~Kgߡyh'b@:7^fgΪ;t֧w:~Ys{C]Cs_NjU^4/71gF:9Aŷ.T7GԤfZ.U~]VKi~z.S~{$]LvA}pE@$0Bp+"c[g9d<|Lb6vAϿ%264;]Q!P|%KBuAA@롐3]Go9+Q9t<; %~n 4mn[W~BO[pF!>K4'L(͑?7)Z)ʚr)sy LT#NώKt.NeVFF,RUJAr_8uK-¬I3-}'E=B,6K5@aa|8Z~@TiӜS d'Bw. ,$-?XWEO)˲tDC$IPu{,E -2* kC[4|-AAEbQ ig=ȝ-yA P`nw JxEV5j۠Lm"/CpX_S $!69d:hDmݣ+GA tŵ1LEXh!H:*E ?# (wD}J&j>!D"$dϐ<aSpЭ1~g |uNZ͉L.K ;ĵ8>#SoXۘh6ֽE.8Z讇:0iC7xЏedhKfk?ډu|;%[񡆐OC RIymBfj>tn޷]+Cwpb&y2*Kx^sx]Q#&QOfZV뒄k'AesUg3ÔuЃwe#149{ܺC+%rt%JzGjPuK U4f'at`*직TY3XE*к>B!qtb|iӟqFWϸɣvDKg2| iU0mw&KuVe) ae}"d$ tP^ u?,|r2Z~@@LD+}v}@ӕJ*P*ׇeFc?Zlw2l\ RsGt4(z>*!Scr4o/t I@.<}pOԂ'q{?|mٞrƍM[w-c7ߎ?Ea4ľq-yiOx3h:͇09Zg,1e;A[Lhc,b _,qDB% 8IN[eвuK d݃kpE.{8bd%ωnSo?FW?j| 7[(@ɢ"W-TXRVݶ>g n5)nT~zԣuWp'r hʋnm7ĽhmG\}Õ[1u5u Q_QE n'يICx 챏ԏѓ*W2[udSo ύ/4gDLq⩅a7X1;^4͋}xIqmPKNM\\funpipe-0.1.0.dist-info/WHEEL HM K-*ϳR03rOK-J,/RHJ,./Q0363 /, (-JLR()*M ILR(4KM̫PKNZ %funpipe-0.1.0.dist-info/top_level.txtK++,HPKNG1}funpipe-0.1.0.dist-info/RECORDɺX,ryX6| a̮j[#9cMu1G3o<@ 8J[#|SqQO8),7ƽ CpF"MCh>[;}͘~`r`?xI~@C4T&2DewNrk$fjjɲ _,'Ό&89c+JB~,Gŷs 3`8}rnEԁFFTXyÔU~B+[ig9LA/Xx r0N)ҵ/An'jAQM]Dy%H9DvQ,:\"Y840 OCZW3*N%ȦJ s02iSӳ&Nq2E?q΋^|  t:) }=J(=A}۲e!1vDC7&Tʃ:rSnDg_R2IemP-9Up{ȩI:&[Y#Ap:>f4F-'n[|"zMZW+v!p{YuP}tv˵ƚ lK vl+YEOj 0 0 _ls!ticQ!B[ʆ'$?GS .Uǖ}:w -$='}(v!P~XmT_I]tJA/q{V }hZTÚ珅gI y=mʓEZlgYDA9/]`HJѠ zCbO+WP?u2ݤPSMBN#1aK, [\x];wI7?qojՅAI^d%VG_+.ל"{.FB5E3U@FMްu/`*b΁Z =M^ޥhMGڍ3ߧ1s66lQ|}r:3bLRV*vq4Zڟ Dm .왪7 ׹Spx%ne#kA #~PI^2D5,nMkcpiUb}VM"u 8J2%Ӕމsxāt7ם+;zS/*X[}b;ۨ8Vؙ4đ;0Y4~ܓcx T2gN`4*GI9Ao꭯Uvr3ϩfPKZNfunpipe/__init__.pyPKZN~ 3funpipe/bam.pyPKZNfunpipe/fasta.pyPKN)/Gn_ funpipe/gatk.pyPKZN3ޑ funpipe/microbiome.pyPKaNK]uc funpipe/phylo.pyPKZN!bfunpipe/picard.pyPKZNsm funpipe/sv.pyPKaNʥfunpipe/utils.pyPKyfunpipe/scripts/pilon_metricsPKZNcGDfunpipe/scripts/qc_metr_plot.RPKZNveRB funpipe/scripts/run_pilon.pyPKZN=+ funpipe/scripts/run_ploidy.pyPKZNY 5funpipe/scripts/run_snpeff.pyPKZN'@rfunpipe/scripts/snpeff_db.shPKZNHs1 funpipe/scripts/vcf_qc_metr.pyPKГ}NYm_d#zfunpipe/scripts/vcf_snp_to_fasta.pyPKN-)wfunpipe-0.1.0.data/scripts/bam_qc_metr.pyPKNDif?QB/funpipe-0.1.0.data/scripts/coverage_analysis.pyPKZNl ?-'funpipe-0.1.0.data/scripts/coverage_barplot.RPKZN;d)ufunpipe-0.1.0.data/scripts/dep_per_win.plPKN$funpipe-0.1.0.data/scripts/fastqc.pyPKNg3funpipe-0.1.0.data/scripts/filter_gatk_genotypes.pyPKN>+funpipe-0.1.0.data/scripts/genot_concord.pyPKZN\5J* funpipe-0.1.0.data/scripts/get_ref_path.pyPKN>$:/"funpipe-0.1.0.data/scripts/patch_ref_contigs.pyPKN[ 3)funpipe-0.1.0.data/scripts/pct_reads_per_species.pyPKN=,1funpipe-0.1.0.data/scripts/phylo_analysis.pyPKN%|K-5(funpipe-0.1.0.data/scripts/pilon_metricsPKZNcGD)funpipe-0.1.0.data/scripts/qc_metr_plot.RPKN\&5'funpipe-0.1.0.data/scripts/run_pilon.pyPKNh ( funpipe-0.1.0.data/scripts/run_ploidy.pyPKN-+( funpipe-0.1.0.data/scripts/run_snpeff.pyPKZN'@'|funpipe-0.1.0.data/scripts/snpeff_db.shPKN$ )funpipe-0.1.0.data/scripts/vcf_qc_metr.pyPKNI' t.funpipe-0.1.0.data/scripts/vcf_snp_to_fasta.pyPKNHwu.funpipe-0.1.0.dist-info/LICENSEPKNI" e =funpipe-0.1.0.dist-info/METADATAPKNM\\q funpipe-0.1.0.dist-info/WHEELPKNZ % funpipe-0.1.0.dist-info/top_level.txtPKNG1}U funpipe-0.1.0.dist-info/RECORDPK66