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cholesky_factor_free.hpp
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1 #ifndef STAN_MATH_PRIM_MAT_FUN_CHOLESKY_FACTOR_FREE_HPP
2 #define STAN_MATH_PRIM_MAT_FUN_CHOLESKY_FACTOR_FREE_HPP
3
4 #include <stan/math/prim/mat/fun/Eigen.hpp>
5 #include <stan/math/prim/mat/err/check_cholesky_factor.hpp>
6 #include <cmath>
7 #include <stdexcept>
8
9 namespace stan {
10
11 namespace math {
12
22 template <typename T>
23 Eigen::Matrix<T, Eigen::Dynamic, 1>
24 cholesky_factor_free(const Eigen::Matrix
25 <T, Eigen::Dynamic, Eigen::Dynamic>& y) {
26 using std::log;
27 if (!stan::math::check_cholesky_factor("cholesky_factor_free", "y", y))
28 throw std::domain_error("cholesky_factor_free: "
29 "y is not a Cholesky factor");
30 int M = y.rows();
31 int N = y.cols();
32 Eigen::Matrix<T, Eigen::Dynamic, 1> x((N * (N + 1)) / 2 + (M - N) * N);
33 int pos = 0;
34 // lower triangle of upper square
35 for (int m = 0; m < N; ++m) {
36 for (int n = 0; n < m; ++n)
37 x(pos++) = y(m, n);
38 // diagonal of upper square
39 x(pos++) = log(y(m, m));
40 }
41 // lower rectangle
42 for (int m = N; m < M; ++m)
43 for (int n = 0; n < N; ++n)
44 x(pos++) = y(m, n);
45 return x;
46 }
47
48
49 }
50
51 }
52
53 #endif
stan::math::check_cholesky_factor
bool check_cholesky_factor(const char *function, const char *name, const Eigen::Matrix< T_y, Eigen::Dynamic, Eigen::Dynamic > &y)
Return true if the specified matrix is a valid Cholesky factor.
Definition: check_cholesky_factor.hpp:35
stan
Definition: log_sum_exp.hpp:8
stan::math::log
fvar< T > log(const fvar< T > &x)
Definition: log.hpp:15
check_cholesky_factor.hpp
stan::math::cholesky_factor_free
Eigen::Matrix< T, Eigen::Dynamic, 1 > cholesky_factor_free(const Eigen::Matrix< T, Eigen::Dynamic, Eigen::Dynamic > &y)
Return the unconstrained vector of parameters correspdonding to the specified Cholesky factor...
Definition: cholesky_factor_free.hpp:24
stan::math::domain_error
void domain_error(const char *function, const char *name, const T &y, const char *msg1, const char *msg2)
Throw a domain error with a consistently formatted message.
Definition: domain_error.hpp:32
Eigen.hpp

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