MANIFEST.in
basesetup.py
setup.py
examples/.gitignore
examples/1vii_3frames.pdb
examples/WebGL-Viewer.ipynb
examples/ala2.h5
examples/atom-selection.ipynb
examples/centroids.ipynb
examples/clustering.ipynb
examples/hbonds.ipynb
examples/iterload.ipynb
examples/native-contact.ipynb
examples/nmr.ipynb
examples/principal-components.ipynb
examples/ramachandran-plot.ipynb
examples/rmsd-benchmark.ipynb
examples/rmsd-drift.ipynb
examples/simulation-with-openmm.ipynb
examples/solvent-accessible-surface-area.ipynb
examples/two-pass-clustering.ipynb
mdtraj/.gitignore
mdtraj/__init__.py
mdtraj/io.py
mdtraj/version.py
mdtraj.egg-info/PKG-INFO
mdtraj.egg-info/SOURCES.txt
mdtraj.egg-info/dependency_links.txt
mdtraj.egg-info/entry_points.txt
mdtraj.egg-info/not-zip-safe
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mdtraj/core/__init__.py
mdtraj/core/element.py
mdtraj/core/residue_names.py
mdtraj/core/selection.py
mdtraj/core/topology.py
mdtraj/core/trajectory.py
mdtraj/formats/__init__.py
mdtraj/formats/amberrst.py
mdtraj/formats/arc.py
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mdtraj/formats/hdf5.py
mdtraj/formats/hoomdxml.py
mdtraj/formats/lammpstrj.py
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mdtraj/formats/mdcrd.py
mdtraj/formats/mol2.py
mdtraj/formats/netcdf.py
mdtraj/formats/openmmxml.py
mdtraj/formats/prmtop.py
mdtraj/formats/psf.py
mdtraj/formats/registry.py
mdtraj/formats/xyzfile.py
mdtraj/formats/binpos/.gitignore
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mdtraj/formats/binpos/include/largefiles.h
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mdtraj/formats/binpos/include/vmdplugin.h
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mdtraj/formats/dcd/.gitignore
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mdtraj/formats/dcd/dcdlib.pxd
mdtraj/formats/dcd/include/dcdplugin.h
mdtraj/formats/dcd/include/endianswap.h
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mdtraj/formats/dcd/include/vmdplugin.h
mdtraj/formats/dcd/src/dcdplugin.c
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mdtraj/formats/pdb/README.md
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mdtraj/formats/pdb/pdbstructure.py
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mdtraj/formats/pdb/tests/test_element.py
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mdtraj/formats/xtc/.gitignore
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mdtraj/formats/xtc/trrlib.pxd
mdtraj/formats/xtc/xdrlib.pxd
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mdtraj/geometry/.gitignore
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mdtraj/geometry/alignment.py
mdtraj/geometry/angle.py
mdtraj/geometry/contact.py
mdtraj/geometry/dihedral.py
mdtraj/geometry/distance.py
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mdtraj/geometry/hbond.py
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mdtraj/geometry/order.py
mdtraj/geometry/rdf.py
mdtraj/geometry/rg.py
mdtraj/geometry/sasa.py
mdtraj/geometry/thermodynamic_properties.py
mdtraj/geometry/include/dridkernels.h
mdtraj/geometry/include/geometry.h
mdtraj/geometry/include/geometryutils.h
mdtraj/geometry/include/hardware.h
mdtraj/geometry/include/moments.h
mdtraj/geometry/include/msvccompat.h
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mdtraj/geometry/include/cephes/cbrt.h
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mdtraj/geometry/src/dridkernels.c
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mdtraj/geometry/tests/test_angles.py
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mdtraj/geometry/tests/test_thermodynamic_properties.py
mdtraj/html/__init__.py
mdtraj/html/imagebutton_widget.py
mdtraj/html/install.py
mdtraj/html/linked_heatmap.py
mdtraj/html/trajectory_widget.py
mdtraj/html/static/context.js
mdtraj/html/static/filesaver.js
mdtraj/html/static/iview.js
mdtraj/html/static/objexporter.js
mdtraj/html/static/surface.min.js
mdtraj/html/static/widget_imagebutton.js
mdtraj/html/static/widget_trajectory.js
mdtraj/nmr/__init__.py
mdtraj/nmr/scalar_couplings.py
mdtraj/nmr/shift_wrappers.py
mdtraj/reporters/__init__.py
mdtraj/reporters/basereporter.py
mdtraj/reporters/dcdreporter.py
mdtraj/reporters/hdf5reporter.py
mdtraj/reporters/netcdfreporter.py
mdtraj/rmsd/.gitignore
mdtraj/rmsd/README.md
mdtraj/rmsd/_lprmsd.pyx
mdtraj/rmsd/_rmsd.pyx
mdtraj/rmsd/include/Munkres.h
mdtraj/rmsd/include/center.h
mdtraj/rmsd/include/euclidean_permutation.hpp
mdtraj/rmsd/include/fancy_index.hpp
mdtraj/rmsd/include/msvccompat.h
mdtraj/rmsd/include/rotation.h
mdtraj/rmsd/include/sse_swizzle.h
mdtraj/rmsd/include/theobald_rmsd.h
mdtraj/rmsd/include/util.h
mdtraj/rmsd/src/Munkres.cpp
mdtraj/rmsd/src/center.c
mdtraj/rmsd/src/euclidean_permutation.cpp
mdtraj/rmsd/src/fancy_index.cpp
mdtraj/rmsd/src/rotation.c
mdtraj/rmsd/src/theobald_rmsd.c
mdtraj/scripts/__init__.py
mdtraj/scripts/mdconvert.py
mdtraj/scripts/mdinspect.py
mdtraj/testing/__init__.py
mdtraj/testing/docscrape.py
mdtraj/testing/docstrings.py
mdtraj/testing/nosetester.py
mdtraj/testing/testing.py
mdtraj/testing/reference/1am7_corrected.xtc
mdtraj/testing/reference/1am7_protein.pdb
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mdtraj/testing/reference/1ncw.pdb.gz
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mdtraj/testing/reference/2EQQ.pdb
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