/* Generated by Cython 0.23.4 */

/* BEGIN: Cython Metadata
{
    "distutils": {
        "depends": [
            "mdtraj/rmsd/include/center.h"
        ],
        "extra_compile_args": [
            "-fopenmp",
            "-msse2",
            "-mssse3",
            "-O3",
            "-funroll-loops",
            "-Wno-unused-function",
            "-Wno-unreachable-code",
            "-Wno-sign-compare"
        ],
        "include_dirs": [
            "mdtraj/rmsd/include"
        ],
        "libraries": [
            "gomp"
        ]
    }
}
END: Cython Metadata */

#define PY_SSIZE_T_CLEAN
#include "Python.h"
#ifndef Py_PYTHON_H
    #error Python headers needed to compile C extensions, please install development version of Python.
#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000)
    #error Cython requires Python 2.6+ or Python 3.2+.
#else
#define CYTHON_ABI "0_23_4"
#include <stddef.h>
#ifndef offsetof
#define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
#endif
#if !defined(WIN32) && !defined(MS_WINDOWS)
  #ifndef __stdcall
    #define __stdcall
  #endif
  #ifndef __cdecl
    #define __cdecl
  #endif
  #ifndef __fastcall
    #define __fastcall
  #endif
#endif
#ifndef DL_IMPORT
  #define DL_IMPORT(t) t
#endif
#ifndef DL_EXPORT
  #define DL_EXPORT(t) t
#endif
#ifndef PY_LONG_LONG
  #define PY_LONG_LONG LONG_LONG
#endif
#ifndef Py_HUGE_VAL
  #define Py_HUGE_VAL HUGE_VAL
#endif
#ifdef PYPY_VERSION
#define CYTHON_COMPILING_IN_PYPY 1
#define CYTHON_COMPILING_IN_CPYTHON 0
#else
#define CYTHON_COMPILING_IN_PYPY 0
#define CYTHON_COMPILING_IN_CPYTHON 1
#endif
#if !defined(CYTHON_USE_PYLONG_INTERNALS) && CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x02070000
#define CYTHON_USE_PYLONG_INTERNALS 1
#endif
#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag)
#define Py_OptimizeFlag 0
#endif
#define __PYX_BUILD_PY_SSIZE_T "n"
#define CYTHON_FORMAT_SSIZE_T "z"
#if PY_MAJOR_VERSION < 3
  #define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
          PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
  #define __Pyx_DefaultClassType PyClass_Type
#else
  #define __Pyx_BUILTIN_MODULE_NAME "builtins"
  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
          PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
  #define __Pyx_DefaultClassType PyType_Type
#endif
#ifndef Py_TPFLAGS_CHECKTYPES
  #define Py_TPFLAGS_CHECKTYPES 0
#endif
#ifndef Py_TPFLAGS_HAVE_INDEX
  #define Py_TPFLAGS_HAVE_INDEX 0
#endif
#ifndef Py_TPFLAGS_HAVE_NEWBUFFER
  #define Py_TPFLAGS_HAVE_NEWBUFFER 0
#endif
#ifndef Py_TPFLAGS_HAVE_FINALIZE
  #define Py_TPFLAGS_HAVE_FINALIZE 0
#endif
#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
  #define CYTHON_PEP393_ENABLED 1
  #define __Pyx_PyUnicode_READY(op)       (likely(PyUnicode_IS_READY(op)) ?\
                                              0 : _PyUnicode_Ready((PyObject *)(op)))
  #define __Pyx_PyUnicode_GET_LENGTH(u)   PyUnicode_GET_LENGTH(u)
  #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
  #define __Pyx_PyUnicode_KIND(u)         PyUnicode_KIND(u)
  #define __Pyx_PyUnicode_DATA(u)         PyUnicode_DATA(u)
  #define __Pyx_PyUnicode_READ(k, d, i)   PyUnicode_READ(k, d, i)
#else
  #define CYTHON_PEP393_ENABLED 0
  #define __Pyx_PyUnicode_READY(op)       (0)
  #define __Pyx_PyUnicode_GET_LENGTH(u)   PyUnicode_GET_SIZE(u)
  #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
  #define __Pyx_PyUnicode_KIND(u)         (sizeof(Py_UNICODE))
  #define __Pyx_PyUnicode_DATA(u)         ((void*)PyUnicode_AS_UNICODE(u))
  #define __Pyx_PyUnicode_READ(k, d, i)   ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
#endif
#if CYTHON_COMPILING_IN_PYPY
  #define __Pyx_PyUnicode_Concat(a, b)      PyNumber_Add(a, b)
  #define __Pyx_PyUnicode_ConcatSafe(a, b)  PyNumber_Add(a, b)
#else
  #define __Pyx_PyUnicode_Concat(a, b)      PyUnicode_Concat(a, b)
  #define __Pyx_PyUnicode_ConcatSafe(a, b)  ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\
      PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b))
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains)
  #define PyUnicode_Contains(u, s)  PySequence_Contains(u, s)
#endif
#define __Pyx_PyString_FormatSafe(a, b)   ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b))
#define __Pyx_PyUnicode_FormatSafe(a, b)  ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b))
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyString_Format(a, b)  PyUnicode_Format(a, b)
#else
  #define __Pyx_PyString_Format(a, b)  PyString_Format(a, b)
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyBaseString_Type            PyUnicode_Type
  #define PyStringObject               PyUnicodeObject
  #define PyString_Type                PyUnicode_Type
  #define PyString_Check               PyUnicode_Check
  #define PyString_CheckExact          PyUnicode_CheckExact
#endif
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
  #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj)
#else
  #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj))
  #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj))
#endif
#ifndef PySet_CheckExact
  #define PySet_CheckExact(obj)        (Py_TYPE(obj) == &PySet_Type)
#endif
#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
#if PY_MAJOR_VERSION >= 3
  #define PyIntObject                  PyLongObject
  #define PyInt_Type                   PyLong_Type
  #define PyInt_Check(op)              PyLong_Check(op)
  #define PyInt_CheckExact(op)         PyLong_CheckExact(op)
  #define PyInt_FromString             PyLong_FromString
  #define PyInt_FromUnicode            PyLong_FromUnicode
  #define PyInt_FromLong               PyLong_FromLong
  #define PyInt_FromSize_t             PyLong_FromSize_t
  #define PyInt_FromSsize_t            PyLong_FromSsize_t
  #define PyInt_AsLong                 PyLong_AsLong
  #define PyInt_AS_LONG                PyLong_AS_LONG
  #define PyInt_AsSsize_t              PyLong_AsSsize_t
  #define PyInt_AsUnsignedLongMask     PyLong_AsUnsignedLongMask
  #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
  #define PyNumber_Int                 PyNumber_Long
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyBoolObject                 PyLongObject
#endif
#if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY
  #ifndef PyUnicode_InternFromString
    #define PyUnicode_InternFromString(s) PyUnicode_FromString(s)
  #endif
#endif
#if PY_VERSION_HEX < 0x030200A4
  typedef long Py_hash_t;
  #define __Pyx_PyInt_FromHash_t PyInt_FromLong
  #define __Pyx_PyInt_AsHash_t   PyInt_AsLong
#else
  #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
  #define __Pyx_PyInt_AsHash_t   PyInt_AsSsize_t
#endif
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func))
#else
  #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass)
#endif
#if PY_VERSION_HEX >= 0x030500B1
#define __Pyx_PyAsyncMethodsStruct PyAsyncMethods
#define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async)
#elif CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3
typedef struct {
    unaryfunc am_await;
    unaryfunc am_aiter;
    unaryfunc am_anext;
} __Pyx_PyAsyncMethodsStruct;
#define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved))
#else
#define __Pyx_PyType_AsAsync(obj) NULL
#endif
#ifndef CYTHON_RESTRICT
  #if defined(__GNUC__)
    #define CYTHON_RESTRICT __restrict__
  #elif defined(_MSC_VER) && _MSC_VER >= 1400
    #define CYTHON_RESTRICT __restrict
  #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
    #define CYTHON_RESTRICT restrict
  #else
    #define CYTHON_RESTRICT
  #endif
#endif
#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None)

#ifndef CYTHON_INLINE
  #if defined(__GNUC__)
    #define CYTHON_INLINE __inline__
  #elif defined(_MSC_VER)
    #define CYTHON_INLINE __inline
  #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
    #define CYTHON_INLINE inline
  #else
    #define CYTHON_INLINE
  #endif
#endif

#if defined(WIN32) || defined(MS_WINDOWS)
  #define _USE_MATH_DEFINES
#endif
#include <math.h>
#ifdef NAN
#define __PYX_NAN() ((float) NAN)
#else
static CYTHON_INLINE float __PYX_NAN() {
  float value;
  memset(&value, 0xFF, sizeof(value));
  return value;
}
#endif


#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyNumber_Divide(x,y)         PyNumber_TrueDivide(x,y)
  #define __Pyx_PyNumber_InPlaceDivide(x,y)  PyNumber_InPlaceTrueDivide(x,y)
#else
  #define __Pyx_PyNumber_Divide(x,y)         PyNumber_Divide(x,y)
  #define __Pyx_PyNumber_InPlaceDivide(x,y)  PyNumber_InPlaceDivide(x,y)
#endif

#ifndef __PYX_EXTERN_C
  #ifdef __cplusplus
    #define __PYX_EXTERN_C extern "C"
  #else
    #define __PYX_EXTERN_C extern
  #endif
#endif

#define __PYX_HAVE___rmsd
#define __PYX_HAVE_API___rmsd
#include "string.h"
#include "stdio.h"
#include "pythread.h"
#include "center.h"
#include "math.h"
#include "stdlib.h"
#include "pystate.h"
#ifdef _OPENMP
#include <omp.h>
#endif /* _OPENMP */

#ifdef PYREX_WITHOUT_ASSERTIONS
#define CYTHON_WITHOUT_ASSERTIONS
#endif

#ifndef CYTHON_UNUSED
# if defined(__GNUC__)
#   if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
#     define CYTHON_UNUSED __attribute__ ((__unused__))
#   else
#     define CYTHON_UNUSED
#   endif
# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
#   define CYTHON_UNUSED __attribute__ ((__unused__))
# else
#   define CYTHON_UNUSED
# endif
#endif
#ifndef CYTHON_NCP_UNUSED
# if CYTHON_COMPILING_IN_CPYTHON
#  define CYTHON_NCP_UNUSED
# else
#  define CYTHON_NCP_UNUSED CYTHON_UNUSED
# endif
#endif
typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding;
                const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;

#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0
#define __PYX_DEFAULT_STRING_ENCODING ""
#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString
#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
#define __Pyx_uchar_cast(c) ((unsigned char)c)
#define __Pyx_long_cast(x) ((long)x)
#define __Pyx_fits_Py_ssize_t(v, type, is_signed)  (\
    (sizeof(type) < sizeof(Py_ssize_t))  ||\
    (sizeof(type) > sizeof(Py_ssize_t) &&\
          likely(v < (type)PY_SSIZE_T_MAX ||\
                 v == (type)PY_SSIZE_T_MAX)  &&\
          (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
                                v == (type)PY_SSIZE_T_MIN)))  ||\
    (sizeof(type) == sizeof(Py_ssize_t) &&\
          (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
                               v == (type)PY_SSIZE_T_MAX)))  )
#if defined (__cplusplus) && __cplusplus >= 201103L
    #include <cstdlib>
    #define __Pyx_sst_abs(value) std::abs(value)
#elif SIZEOF_INT >= SIZEOF_SIZE_T
    #define __Pyx_sst_abs(value) abs(value)
#elif SIZEOF_LONG >= SIZEOF_SIZE_T
    #define __Pyx_sst_abs(value) labs(value)
#elif defined (_MSC_VER) && defined (_M_X64)
    #define __Pyx_sst_abs(value) _abs64(value)
#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
    #define __Pyx_sst_abs(value) llabs(value)
#elif defined (__GNUC__)
    #define __Pyx_sst_abs(value) __builtin_llabs(value)
#else
    #define __Pyx_sst_abs(value) ((value<0) ? -value : value)
#endif
static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*);
static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s))
#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
#define __Pyx_PyBytes_FromString        PyBytes_FromString
#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
#if PY_MAJOR_VERSION < 3
    #define __Pyx_PyStr_FromString        __Pyx_PyBytes_FromString
    #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
#else
    #define __Pyx_PyStr_FromString        __Pyx_PyUnicode_FromString
    #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
#endif
#define __Pyx_PyObject_AsSString(s)    ((signed char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsUString(s)    ((unsigned char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_FromCString(s)  __Pyx_PyObject_FromString((const char*)s)
#define __Pyx_PyBytes_FromCString(s)   __Pyx_PyBytes_FromString((const char*)s)
#define __Pyx_PyByteArray_FromCString(s)   __Pyx_PyByteArray_FromString((const char*)s)
#define __Pyx_PyStr_FromCString(s)     __Pyx_PyStr_FromString((const char*)s)
#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
#if PY_MAJOR_VERSION < 3
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
{
    const Py_UNICODE *u_end = u;
    while (*u_end++) ;
    return (size_t)(u_end - u - 1);
}
#else
#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen
#endif
#define __Pyx_PyUnicode_FromUnicode(u)       PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
#define __Pyx_PyUnicode_AsUnicode            PyUnicode_AsUnicode
#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
#define __Pyx_PyBool_FromLong(b) ((b) ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False))
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x);
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
#if CYTHON_COMPILING_IN_CPYTHON
#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
#else
#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
#endif
#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
static int __Pyx_sys_getdefaultencoding_not_ascii;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
    PyObject* sys;
    PyObject* default_encoding = NULL;
    PyObject* ascii_chars_u = NULL;
    PyObject* ascii_chars_b = NULL;
    const char* default_encoding_c;
    sys = PyImport_ImportModule("sys");
    if (!sys) goto bad;
    default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
    Py_DECREF(sys);
    if (!default_encoding) goto bad;
    default_encoding_c = PyBytes_AsString(default_encoding);
    if (!default_encoding_c) goto bad;
    if (strcmp(default_encoding_c, "ascii") == 0) {
        __Pyx_sys_getdefaultencoding_not_ascii = 0;
    } else {
        char ascii_chars[128];
        int c;
        for (c = 0; c < 128; c++) {
            ascii_chars[c] = c;
        }
        __Pyx_sys_getdefaultencoding_not_ascii = 1;
        ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL);
        if (!ascii_chars_u) goto bad;
        ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL);
        if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) {
            PyErr_Format(
                PyExc_ValueError,
                "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.",
                default_encoding_c);
            goto bad;
        }
        Py_DECREF(ascii_chars_u);
        Py_DECREF(ascii_chars_b);
    }
    Py_DECREF(default_encoding);
    return 0;
bad:
    Py_XDECREF(default_encoding);
    Py_XDECREF(ascii_chars_u);
    Py_XDECREF(ascii_chars_b);
    return -1;
}
#endif
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
#else
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
static char* __PYX_DEFAULT_STRING_ENCODING;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
    PyObject* sys;
    PyObject* default_encoding = NULL;
    char* default_encoding_c;
    sys = PyImport_ImportModule("sys");
    if (!sys) goto bad;
    default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
    Py_DECREF(sys);
    if (!default_encoding) goto bad;
    default_encoding_c = PyBytes_AsString(default_encoding);
    if (!default_encoding_c) goto bad;
    __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c));
    if (!__PYX_DEFAULT_STRING_ENCODING) goto bad;
    strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c);
    Py_DECREF(default_encoding);
    return 0;
bad:
    Py_XDECREF(default_encoding);
    return -1;
}
#endif
#endif


/* Test for GCC > 2.95 */
#if defined(__GNUC__)     && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))
  #define likely(x)   __builtin_expect(!!(x), 1)
  #define unlikely(x) __builtin_expect(!!(x), 0)
#else /* !__GNUC__ or GCC < 2.95 */
  #define likely(x)   (x)
  #define unlikely(x) (x)
#endif /* __GNUC__ */

static PyObject *__pyx_m;
static PyObject *__pyx_d;
static PyObject *__pyx_b;
static PyObject *__pyx_empty_tuple;
static PyObject *__pyx_empty_bytes;
static int __pyx_lineno;
static int __pyx_clineno = 0;
static const char * __pyx_cfilenm= __FILE__;
static const char *__pyx_filename;


static const char *__pyx_f[] = {
  "mdtraj/rmsd/_rmsd.pyx",
  "stringsource",
  "type.pxd",
  "bool.pxd",
  "complex.pxd",
};
struct __pyx_memoryview_obj;
typedef struct {
  struct __pyx_memoryview_obj *memview;
  char *data;
  Py_ssize_t shape[8];
  Py_ssize_t strides[8];
  Py_ssize_t suboffsets[8];
} __Pyx_memviewslice;

#define IS_UNSIGNED(type) (((type) -1) > 0)
struct __Pyx_StructField_;
#define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0)
typedef struct {
  const char* name;
  struct __Pyx_StructField_* fields;
  size_t size;
  size_t arraysize[8];
  int ndim;
  char typegroup;
  char is_unsigned;
  int flags;
} __Pyx_TypeInfo;
typedef struct __Pyx_StructField_ {
  __Pyx_TypeInfo* type;
  const char* name;
  size_t offset;
} __Pyx_StructField;
typedef struct {
  __Pyx_StructField* field;
  size_t parent_offset;
} __Pyx_BufFmt_StackElem;
typedef struct {
  __Pyx_StructField root;
  __Pyx_BufFmt_StackElem* head;
  size_t fmt_offset;
  size_t new_count, enc_count;
  size_t struct_alignment;
  int is_complex;
  char enc_type;
  char new_packmode;
  char enc_packmode;
  char is_valid_array;
} __Pyx_BufFmt_Context;

#include <pythread.h>
#ifndef CYTHON_ATOMICS
    #define CYTHON_ATOMICS 1
#endif
#define __pyx_atomic_int_type int
#if CYTHON_ATOMICS && __GNUC__ >= 4 && (__GNUC_MINOR__ > 1 ||\
                    (__GNUC_MINOR__ == 1 && __GNUC_PATCHLEVEL >= 2)) &&\
                    !defined(__i386__)
    #define __pyx_atomic_incr_aligned(value, lock) __sync_fetch_and_add(value, 1)
    #define __pyx_atomic_decr_aligned(value, lock) __sync_fetch_and_sub(value, 1)
    #ifdef __PYX_DEBUG_ATOMICS
        #warning "Using GNU atomics"
    #endif
#elif CYTHON_ATOMICS && defined(_MSC_VER) && 0
    #include <Windows.h>
    #undef __pyx_atomic_int_type
    #define __pyx_atomic_int_type LONG
    #define __pyx_atomic_incr_aligned(value, lock) InterlockedIncrement(value)
    #define __pyx_atomic_decr_aligned(value, lock) InterlockedDecrement(value)
    #ifdef __PYX_DEBUG_ATOMICS
        #pragma message ("Using MSVC atomics")
    #endif
#elif CYTHON_ATOMICS && (defined(__ICC) || defined(__INTEL_COMPILER)) && 0
    #define __pyx_atomic_incr_aligned(value, lock) _InterlockedIncrement(value)
    #define __pyx_atomic_decr_aligned(value, lock) _InterlockedDecrement(value)
    #ifdef __PYX_DEBUG_ATOMICS
        #warning "Using Intel atomics"
    #endif
#else
    #undef CYTHON_ATOMICS
    #define CYTHON_ATOMICS 0
    #ifdef __PYX_DEBUG_ATOMICS
        #warning "Not using atomics"
    #endif
#endif
typedef volatile __pyx_atomic_int_type __pyx_atomic_int;
#if CYTHON_ATOMICS
    #define __pyx_add_acquisition_count(memview)\
             __pyx_atomic_incr_aligned(__pyx_get_slice_count_pointer(memview), memview->lock)
    #define __pyx_sub_acquisition_count(memview)\
            __pyx_atomic_decr_aligned(__pyx_get_slice_count_pointer(memview), memview->lock)
#else
    #define __pyx_add_acquisition_count(memview)\
            __pyx_add_acquisition_count_locked(__pyx_get_slice_count_pointer(memview), memview->lock)
    #define __pyx_sub_acquisition_count(memview)\
            __pyx_sub_acquisition_count_locked(__pyx_get_slice_count_pointer(memview), memview->lock)
#endif


/*--- Type declarations ---*/
struct __pyx_array_obj;
struct __pyx_MemviewEnum_obj;
struct __pyx_memoryview_obj;
struct __pyx_memoryviewslice_obj;

/* "View.MemoryView":101
 * 
 * @cname("__pyx_array")
 * cdef class array:             # <<<<<<<<<<<<<<
 * 
 *     cdef:
 */
struct __pyx_array_obj {
  PyObject_HEAD
  char *data;
  Py_ssize_t len;
  char *format;
  int ndim;
  Py_ssize_t *_shape;
  Py_ssize_t *_strides;
  Py_ssize_t itemsize;
  PyObject *mode;
  PyObject *_format;
  void (*callback_free_data)(void *);
  int free_data;
  int dtype_is_object;
};


/* "View.MemoryView":271
 * 
 * @cname('__pyx_MemviewEnum')
 * cdef class Enum(object):             # <<<<<<<<<<<<<<
 *     cdef object name
 *     def __init__(self, name):
 */
struct __pyx_MemviewEnum_obj {
  PyObject_HEAD
  PyObject *name;
};


/* "View.MemoryView":304
 * 
 * @cname('__pyx_memoryview')
 * cdef class memoryview(object):             # <<<<<<<<<<<<<<
 * 
 *     cdef object obj
 */
struct __pyx_memoryview_obj {
  PyObject_HEAD
  struct __pyx_vtabstruct_memoryview *__pyx_vtab;
  PyObject *obj;
  PyObject *_size;
  PyObject *_array_interface;
  PyThread_type_lock lock;
  __pyx_atomic_int acquisition_count[2];
  __pyx_atomic_int *acquisition_count_aligned_p;
  Py_buffer view;
  int flags;
  int dtype_is_object;
  __Pyx_TypeInfo *typeinfo;
};


/* "View.MemoryView":923
 * 
 * @cname('__pyx_memoryviewslice')
 * cdef class _memoryviewslice(memoryview):             # <<<<<<<<<<<<<<
 *     "Internal class for passing memoryview slices to Python"
 * 
 */
struct __pyx_memoryviewslice_obj {
  struct __pyx_memoryview_obj __pyx_base;
  __Pyx_memviewslice from_slice;
  PyObject *from_object;
  PyObject *(*to_object_func)(char *);
  int (*to_dtype_func)(char *, PyObject *);
};



/* "View.MemoryView":304
 * 
 * @cname('__pyx_memoryview')
 * cdef class memoryview(object):             # <<<<<<<<<<<<<<
 * 
 *     cdef object obj
 */

struct __pyx_vtabstruct_memoryview {
  char *(*get_item_pointer)(struct __pyx_memoryview_obj *, PyObject *);
  PyObject *(*is_slice)(struct __pyx_memoryview_obj *, PyObject *);
  PyObject *(*setitem_slice_assignment)(struct __pyx_memoryview_obj *, PyObject *, PyObject *);
  PyObject *(*setitem_slice_assign_scalar)(struct __pyx_memoryview_obj *, struct __pyx_memoryview_obj *, PyObject *);
  PyObject *(*setitem_indexed)(struct __pyx_memoryview_obj *, PyObject *, PyObject *);
  PyObject *(*convert_item_to_object)(struct __pyx_memoryview_obj *, char *);
  PyObject *(*assign_item_from_object)(struct __pyx_memoryview_obj *, char *, PyObject *);
};
static struct __pyx_vtabstruct_memoryview *__pyx_vtabptr_memoryview;


/* "View.MemoryView":923
 * 
 * @cname('__pyx_memoryviewslice')
 * cdef class _memoryviewslice(memoryview):             # <<<<<<<<<<<<<<
 *     "Internal class for passing memoryview slices to Python"
 * 
 */

struct __pyx_vtabstruct__memoryviewslice {
  struct __pyx_vtabstruct_memoryview __pyx_base;
};
static struct __pyx_vtabstruct__memoryviewslice *__pyx_vtabptr__memoryviewslice;

/* --- Runtime support code (head) --- */
#ifndef CYTHON_REFNANNY
  #define CYTHON_REFNANNY 0
#endif
#if CYTHON_REFNANNY
  typedef struct {
    void (*INCREF)(void*, PyObject*, int);
    void (*DECREF)(void*, PyObject*, int);
    void (*GOTREF)(void*, PyObject*, int);
    void (*GIVEREF)(void*, PyObject*, int);
    void* (*SetupContext)(const char*, int, const char*);
    void (*FinishContext)(void**);
  } __Pyx_RefNannyAPIStruct;
  static __Pyx_RefNannyAPIStruct *__Pyx_RefNanny = NULL;
  static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname);
  #define __Pyx_RefNannyDeclarations void *__pyx_refnanny = NULL;
#ifdef WITH_THREAD
  #define __Pyx_RefNannySetupContext(name, acquire_gil)\
          if (acquire_gil) {\
              PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\
              __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\
              PyGILState_Release(__pyx_gilstate_save);\
          } else {\
              __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\
          }
#else
  #define __Pyx_RefNannySetupContext(name, acquire_gil)\
          __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__)
#endif
  #define __Pyx_RefNannyFinishContext()\
          __Pyx_RefNanny->FinishContext(&__pyx_refnanny)
  #define __Pyx_INCREF(r)  __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
  #define __Pyx_DECREF(r)  __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
  #define __Pyx_GOTREF(r)  __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
  #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
  #define __Pyx_XINCREF(r)  do { if((r) != NULL) {__Pyx_INCREF(r); }} while(0)
  #define __Pyx_XDECREF(r)  do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0)
  #define __Pyx_XGOTREF(r)  do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0)
  #define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);}} while(0)
#else
  #define __Pyx_RefNannyDeclarations
  #define __Pyx_RefNannySetupContext(name, acquire_gil)
  #define __Pyx_RefNannyFinishContext()
  #define __Pyx_INCREF(r) Py_INCREF(r)
  #define __Pyx_DECREF(r) Py_DECREF(r)
  #define __Pyx_GOTREF(r)
  #define __Pyx_GIVEREF(r)
  #define __Pyx_XINCREF(r) Py_XINCREF(r)
  #define __Pyx_XDECREF(r) Py_XDECREF(r)
  #define __Pyx_XGOTREF(r)
  #define __Pyx_XGIVEREF(r)
#endif
#define __Pyx_XDECREF_SET(r, v) do {\
        PyObject *tmp = (PyObject *) r;\
        r = v; __Pyx_XDECREF(tmp);\
    } while (0)
#define __Pyx_DECREF_SET(r, v) do {\
        PyObject *tmp = (PyObject *) r;\
        r = v; __Pyx_DECREF(tmp);\
    } while (0)
#define __Pyx_CLEAR(r)    do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0)
#define __Pyx_XCLEAR(r)   do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0)

#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) {
    PyTypeObject* tp = Py_TYPE(obj);
    if (likely(tp->tp_getattro))
        return tp->tp_getattro(obj, attr_name);
#if PY_MAJOR_VERSION < 3
    if (likely(tp->tp_getattr))
        return tp->tp_getattr(obj, PyString_AS_STRING(attr_name));
#endif
    return PyObject_GetAttr(obj, attr_name);
}
#else
#define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n)
#endif

static PyObject *__Pyx_GetBuiltinName(PyObject *name);

static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
    Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found);

static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name);

static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\
    PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\
    const char* function_name);

static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
    const char *name, int exact);

static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name);

#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw);
#else
#define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw)
#endif

#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg);
#endif

static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg);

#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
    (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
    __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\
    (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\
               __Pyx_GetItemInt_Generic(o, to_py_func(i))))
#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
    (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
    __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
    (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL))
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
                                                              int wraparound, int boundscheck);
#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
    (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
    __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
    (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL))
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
                                                              int wraparound, int boundscheck);
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j);
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i,
                                                     int is_list, int wraparound, int boundscheck);

static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb);
static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb);

static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause);

#if CYTHON_COMPILING_IN_CPYTHON
static PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, long intval, int inplace);
#else
#define __Pyx_PyInt_EqObjC(op1, op2, intval, inplace)\
    PyObject_RichCompare(op1, op2, Py_EQ)
    #endif

static CYTHON_INLINE int  __Pyx_GetBufferAndValidate(Py_buffer* buf, PyObject* obj,
    __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack);
static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info);

#define __Pyx_BUF_MAX_NDIMS %(BUF_MAX_NDIMS)d
#define __Pyx_MEMVIEW_DIRECT   1
#define __Pyx_MEMVIEW_PTR      2
#define __Pyx_MEMVIEW_FULL     4
#define __Pyx_MEMVIEW_CONTIG   8
#define __Pyx_MEMVIEW_STRIDED  16
#define __Pyx_MEMVIEW_FOLLOW   32
#define __Pyx_IS_C_CONTIG 1
#define __Pyx_IS_F_CONTIG 2
static int __Pyx_init_memviewslice(
                struct __pyx_memoryview_obj *memview,
                int ndim,
                __Pyx_memviewslice *memviewslice,
                int memview_is_new_reference);
static CYTHON_INLINE int __pyx_add_acquisition_count_locked(
    __pyx_atomic_int *acquisition_count, PyThread_type_lock lock);
static CYTHON_INLINE int __pyx_sub_acquisition_count_locked(
    __pyx_atomic_int *acquisition_count, PyThread_type_lock lock);
#define __pyx_get_slice_count_pointer(memview) (memview->acquisition_count_aligned_p)
#define __pyx_get_slice_count(memview) (*__pyx_get_slice_count_pointer(memview))
#define __PYX_INC_MEMVIEW(slice, have_gil) __Pyx_INC_MEMVIEW(slice, have_gil, __LINE__)
#define __PYX_XDEC_MEMVIEW(slice, have_gil) __Pyx_XDEC_MEMVIEW(slice, have_gil, __LINE__)
static CYTHON_INLINE void __Pyx_INC_MEMVIEW(__Pyx_memviewslice *, int, int);
static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *, int, int);

static void __Pyx_RaiseBufferIndexError(int axis);

static CYTHON_INLINE Py_ssize_t __Pyx_mod_Py_ssize_t(Py_ssize_t, Py_ssize_t);

#include <string.h>

static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals);

static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals);

#if PY_MAJOR_VERSION >= 3
#define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals
#else
#define __Pyx_PyString_Equals __Pyx_PyBytes_Equals
#endif

static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t, Py_ssize_t);

#define UNARY_NEG_WOULD_OVERFLOW(x)\
        (((x) < 0) & ((unsigned long)(x) == 0-(unsigned long)(x)))

static CYTHON_UNUSED int __pyx_array_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
static PyObject *get_memview(PyObject *__pyx_v_self); /*proto*/
static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *);

static CYTHON_INLINE PyObject* __Pyx_decode_c_string(
         const char* cstring, Py_ssize_t start, Py_ssize_t stop,
         const char* encoding, const char* errors,
         PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors));

static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);

static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);

static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void);

static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type);

static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb);
static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb);

static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb);

static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb);

static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level);

static CYTHON_UNUSED int __pyx_memoryview_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
static PyObject *__pyx_memoryview_transpose(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview__get__base(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_shape(PyObject *__pyx_v_self); /*proto*/
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) {
    PyListObject* L = (PyListObject*) list;
    Py_ssize_t len = Py_SIZE(list);
    if (likely(L->allocated > len)) {
        Py_INCREF(x);
        PyList_SET_ITEM(list, len, x);
        Py_SIZE(list) = len+1;
        return 0;
    }
    return PyList_Append(list, x);
}
#else
#define __Pyx_ListComp_Append(L,x) PyList_Append(L,x)
#endif

static PyObject *__pyx_memoryview_get_strides(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_suboffsets(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_ndim(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_itemsize(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_nbytes(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_size(PyObject *__pyx_v_self); /*proto*/
#if CYTHON_COMPILING_IN_CPYTHON
static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace);
#else
#define __Pyx_PyInt_AddObjC(op1, op2, intval, inplace)\
    (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2))
#endif

static CYTHON_INLINE int __Pyx_PyList_Extend(PyObject* L, PyObject* v) {
#if CYTHON_COMPILING_IN_CPYTHON
    PyObject* none = _PyList_Extend((PyListObject*)L, v);
    if (unlikely(!none))
        return -1;
    Py_DECREF(none);
    return 0;
#else
    return PyList_SetSlice(L, PY_SSIZE_T_MAX, PY_SSIZE_T_MAX, v);
#endif
}

#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) {
    PyListObject* L = (PyListObject*) list;
    Py_ssize_t len = Py_SIZE(list);
    if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) {
        Py_INCREF(x);
        PyList_SET_ITEM(list, len, x);
        Py_SIZE(list) = len+1;
        return 0;
    }
    return PyList_Append(list, x);
}
#else
#define __Pyx_PyList_Append(L,x) PyList_Append(L,x)
#endif

static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname);

#ifndef __PYX_FORCE_INIT_THREADS
  #define __PYX_FORCE_INIT_THREADS 0
#endif

static CYTHON_INLINE long __Pyx_div_long(long, long);

static PyObject *__pyx_memoryviewslice__get__base(PyObject *__pyx_v_self); /*proto*/
static void __Pyx_WriteUnraisable(const char *name, int clineno,
                                  int lineno, const char *filename,
                                  int full_traceback, int nogil);

static int __Pyx_SetVtable(PyObject *dict, void *vtable);

static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name);

typedef struct {
    int code_line;
    PyCodeObject* code_object;
} __Pyx_CodeObjectCacheEntry;
struct __Pyx_CodeObjectCache {
    int count;
    int max_count;
    __Pyx_CodeObjectCacheEntry* entries;
};
static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL};
static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
static PyCodeObject *__pyx_find_code_object(int code_line);
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);

static void __Pyx_AddTraceback(const char *funcname, int c_line,
                               int py_line, const char *filename);

typedef struct {
  Py_ssize_t shape, strides, suboffsets;
} __Pyx_Buf_DimInfo;
typedef struct {
  size_t refcount;
  Py_buffer pybuffer;
} __Pyx_Buffer;
typedef struct {
  __Pyx_Buffer *rcbuffer;
  char *data;
  __Pyx_Buf_DimInfo diminfo[8];
} __Pyx_LocalBuf_ND;

#if PY_MAJOR_VERSION < 3
    static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags);
    static void __Pyx_ReleaseBuffer(Py_buffer *view);
#else
    #define __Pyx_GetBuffer PyObject_GetBuffer
    #define __Pyx_ReleaseBuffer PyBuffer_Release
#endif


static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0};
static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1};

static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);

static int __pyx_typeinfo_cmp(__Pyx_TypeInfo *a, __Pyx_TypeInfo *b);

static int __Pyx_ValidateAndInit_memviewslice(
                int *axes_specs,
                int c_or_f_flag,
                int buf_flags,
                int ndim,
                __Pyx_TypeInfo *dtype,
                __Pyx_BufFmt_StackElem stack[],
                __Pyx_memviewslice *memviewslice,
                PyObject *original_obj);

static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(PyObject *);

static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dc_float(PyObject *);

static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);

static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);

static PyObject *__pyx_memview_get_float(const char *itemp);
static int __pyx_memview_set_float(const char *itemp, PyObject *obj);

static int __pyx_memviewslice_is_contig(const __Pyx_memviewslice *mvs,
                                        char order, int ndim);

static int __pyx_slices_overlap(__Pyx_memviewslice *slice1,
                                __Pyx_memviewslice *slice2,
                                int ndim, size_t itemsize);

static __Pyx_memviewslice
__pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs,
                                 const char *mode, int ndim,
                                 size_t sizeof_dtype, int contig_flag,
                                 int dtype_is_object);

static CYTHON_INLINE PyObject *__pyx_capsule_create(void *p, const char *sig);

static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *);

static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);

static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dsdsds_float(PyObject *);

static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dsds_float(PyObject *);

static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_ds_float(PyObject *);

static int __Pyx_check_binary_version(void);

#if !defined(__Pyx_PyIdentifier_FromString)
#if PY_MAJOR_VERSION < 3
  #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s)
#else
  #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s)
#endif
#endif

static PyObject *__Pyx_ImportModule(const char *name);

static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict);

static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);

static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index); /* proto*/
static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj); /* proto*/
static PyObject *__pyx_memoryview_setitem_slice_assignment(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_dst, PyObject *__pyx_v_src); /* proto*/
static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memoryview_obj *__pyx_v_self, struct __pyx_memoryview_obj *__pyx_v_dst, PyObject *__pyx_v_value); /* proto*/
static PyObject *__pyx_memoryview_setitem_indexed(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto*/
static PyObject *__pyx_memoryview_convert_item_to_object(struct __pyx_memoryview_obj *__pyx_v_self, char *__pyx_v_itemp); /* proto*/
static PyObject *__pyx_memoryview_assign_item_from_object(struct __pyx_memoryview_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value); /* proto*/
static PyObject *__pyx_memoryviewslice_convert_item_to_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp); /* proto*/
static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value); /* proto*/

/* Module declarations from 'cython.view' */

/* Module declarations from 'cython' */

/* Module declarations from 'cpython.version' */

/* Module declarations from '__builtin__' */

/* Module declarations from 'cpython.type' */
static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0;

/* Module declarations from 'libc.string' */

/* Module declarations from 'libc.stdio' */

/* Module declarations from 'cpython.object' */

/* Module declarations from 'cpython.ref' */

/* Module declarations from 'cpython.exc' */

/* Module declarations from 'cpython.module' */

/* Module declarations from 'cpython.mem' */

/* Module declarations from 'cpython.tuple' */

/* Module declarations from 'cpython.list' */

/* Module declarations from 'cpython.sequence' */

/* Module declarations from 'cpython.mapping' */

/* Module declarations from 'cpython.iterator' */

/* Module declarations from 'cpython.number' */

/* Module declarations from 'cpython.int' */

/* Module declarations from '__builtin__' */

/* Module declarations from 'cpython.bool' */
static PyTypeObject *__pyx_ptype_7cpython_4bool_bool = 0;

/* Module declarations from 'cpython.long' */

/* Module declarations from 'cpython.float' */

/* Module declarations from '__builtin__' */

/* Module declarations from 'cpython.complex' */
static PyTypeObject *__pyx_ptype_7cpython_7complex_complex = 0;

/* Module declarations from 'cpython.string' */

/* Module declarations from 'cpython.unicode' */

/* Module declarations from 'cpython.dict' */

/* Module declarations from 'cpython.instance' */

/* Module declarations from 'cpython.function' */

/* Module declarations from 'cpython.method' */

/* Module declarations from 'cpython.weakref' */

/* Module declarations from 'cpython.getargs' */

/* Module declarations from 'cpython.pythread' */

/* Module declarations from 'cpython.pystate' */

/* Module declarations from 'cpython.cobject' */

/* Module declarations from 'cpython.oldbuffer' */

/* Module declarations from 'cpython.set' */

/* Module declarations from 'cpython.buffer' */

/* Module declarations from 'cpython.bytes' */

/* Module declarations from 'cpython.pycapsule' */

/* Module declarations from 'cpython' */

/* Module declarations from '_rmsd' */
static PyTypeObject *__pyx_array_type = 0;
static PyTypeObject *__pyx_MemviewEnum_type = 0;
static PyTypeObject *__pyx_memoryview_type = 0;
static PyTypeObject *__pyx_memoryviewslice_type = 0;
static PyObject *generic = 0;
static PyObject *strided = 0;
static PyObject *indirect = 0;
static PyObject *contiguous = 0;
static PyObject *indirect_contiguous = 0;
__PYX_EXTERN_C DL_IMPORT(float) msd_axis_major(int, int, int, float *, float *, float, float); /*proto*/
__PYX_EXTERN_C DL_IMPORT(float) msd_atom_major(int, int, float *, float *, float, float, int, float *); /*proto*/
__PYX_EXTERN_C DL_IMPORT(float) rot_msd_atom_major(int const , int const , float const *, float const *, float const *); /*proto*/
__PYX_EXTERN_C DL_IMPORT(float) rot_atom_major(int const , float *, float const *); /*proto*/
static struct __pyx_array_obj *__pyx_array_new(PyObject *, Py_ssize_t, char *, char *, char *); /*proto*/
static void *__pyx_align_pointer(void *, size_t); /*proto*/
static PyObject *__pyx_memoryview_new(PyObject *, int, int, __Pyx_TypeInfo *); /*proto*/
static CYTHON_INLINE int __pyx_memoryview_check(PyObject *); /*proto*/
static PyObject *_unellipsify(PyObject *, int); /*proto*/
static PyObject *assert_direct_dimensions(Py_ssize_t *, int); /*proto*/
static struct __pyx_memoryview_obj *__pyx_memview_slice(struct __pyx_memoryview_obj *, PyObject *); /*proto*/
static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *, Py_ssize_t, Py_ssize_t, Py_ssize_t, int, int, int *, Py_ssize_t, Py_ssize_t, Py_ssize_t, int, int, int, int); /*proto*/
static char *__pyx_pybuffer_index(Py_buffer *, char *, Py_ssize_t, Py_ssize_t); /*proto*/
static int __pyx_memslice_transpose(__Pyx_memviewslice *); /*proto*/
static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice, int, PyObject *(*)(char *), int (*)(char *, PyObject *), int); /*proto*/
static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __pyx_memoryview_obj *, __Pyx_memviewslice *); /*proto*/
static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *, __Pyx_memviewslice *); /*proto*/
static PyObject *__pyx_memoryview_copy_object(struct __pyx_memoryview_obj *); /*proto*/
static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview_obj *, __Pyx_memviewslice *); /*proto*/
static Py_ssize_t abs_py_ssize_t(Py_ssize_t); /*proto*/
static char __pyx_get_best_slice_order(__Pyx_memviewslice *, int); /*proto*/
static void _copy_strided_to_strided(char *, Py_ssize_t *, char *, Py_ssize_t *, Py_ssize_t *, Py_ssize_t *, int, size_t); /*proto*/
static void copy_strided_to_strided(__Pyx_memviewslice *, __Pyx_memviewslice *, int, size_t); /*proto*/
static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *, int); /*proto*/
static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *, Py_ssize_t *, Py_ssize_t, int, char); /*proto*/
static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *, __Pyx_memviewslice *, char, int); /*proto*/
static int __pyx_memoryview_err_extents(int, Py_ssize_t, Py_ssize_t); /*proto*/
static int __pyx_memoryview_err_dim(PyObject *, char *, int); /*proto*/
static int __pyx_memoryview_err(PyObject *, char *); /*proto*/
static int __pyx_memoryview_copy_contents(__Pyx_memviewslice, __Pyx_memviewslice, int, int, int); /*proto*/
static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *, int, int); /*proto*/
static void __pyx_memoryview_refcount_copying(__Pyx_memviewslice *, int, int, int); /*proto*/
static void __pyx_memoryview_refcount_objects_in_slice_with_gil(char *, Py_ssize_t *, Py_ssize_t *, int, int); /*proto*/
static void __pyx_memoryview_refcount_objects_in_slice(char *, Py_ssize_t *, Py_ssize_t *, int, int); /*proto*/
static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *, int, size_t, void *, int); /*proto*/
static void __pyx_memoryview__slice_assign_scalar(char *, Py_ssize_t *, Py_ssize_t *, int, size_t, void *); /*proto*/
static __Pyx_TypeInfo __Pyx_TypeInfo_float = { "float", NULL, sizeof(float), { 0 }, 0, 'R', 0, 0 };
#define __Pyx_MODULE_NAME "_rmsd"
int __pyx_module_is_main__rmsd = 0;

/* Implementation of '_rmsd' */
static PyObject *__pyx_builtin_ValueError;
static PyObject *__pyx_builtin_range;
static PyObject *__pyx_builtin_MemoryError;
static PyObject *__pyx_builtin_enumerate;
static PyObject *__pyx_builtin_Ellipsis;
static PyObject *__pyx_builtin_TypeError;
static PyObject *__pyx_builtin_id;
static PyObject *__pyx_builtin_IndexError;
static char __pyx_k_C[] = "C";
static char __pyx_k_O[] = "O";
static char __pyx_k_c[] = "c";
static char __pyx_k_i[] = "i";
static char __pyx_k_g1[] = "g1";
static char __pyx_k_g2[] = "g2";
static char __pyx_k_id[] = "id";
static char __pyx_k_np[] = "np";
static char __pyx_k_all[] = "all";
static char __pyx_k_int[] = "int";
static char __pyx_k_msd[] = "msd";
static char __pyx_k_obj[] = "obj";
static char __pyx_k_rot[] = "rot";
static char __pyx_k_xyz[] = "xyz";
static char __pyx_k_base[] = "base";
static char __pyx_k_copy[] = "copy";
static char __pyx_k_main[] = "__main__";
static char __pyx_k_mode[] = "mode";
static char __pyx_k_name[] = "name";
static char __pyx_k_ndim[] = "ndim";
static char __pyx_k_pack[] = "pack";
static char __pyx_k_rmsd[] = "rmsd";
static char __pyx_k_size[] = "size";
static char __pyx_k_step[] = "step";
static char __pyx_k_stop[] = "stop";
static char __pyx_k_test[] = "__test__";
static char __pyx_k_xyz1[] = "xyz1";
static char __pyx_k_xyz2[] = "xyz2";
static char __pyx_k_ASCII[] = "ASCII";
static char __pyx_k_array[] = "array";
static char __pyx_k_class[] = "__class__";
static char __pyx_k_dtype[] = "dtype";
static char __pyx_k_empty[] = "empty";
static char __pyx_k_error[] = "error";
static char __pyx_k_flags[] = "flags";
static char __pyx_k_frame[] = "frame";
static char __pyx_k_numpy[] = "numpy";
static char __pyx_k_order[] = "order";
static char __pyx_k_range[] = "range";
static char __pyx_k_ref_g[] = "ref_g";
static char __pyx_k_shape[] = "shape";
static char __pyx_k_start[] = "start";
static char __pyx_k_zeros[] = "zeros";
static char __pyx_k_encode[] = "encode";
static char __pyx_k_format[] = "format";
static char __pyx_k_import[] = "__import__";
static char __pyx_k_name_2[] = "__name__";
static char __pyx_k_rmsd_2[] = "_rmsd";
static char __pyx_k_struct[] = "struct";
static char __pyx_k_target[] = "target";
static char __pyx_k_traces[] = "traces";
static char __pyx_k_unpack[] = "unpack";
static char __pyx_k_asarray[] = "asarray";
static char __pyx_k_float32[] = "float32";
static char __pyx_k_fortran[] = "fortran";
static char __pyx_k_memview[] = "memview";
static char __pyx_k_n_atoms[] = "n_atoms";
static char __pyx_k_Ellipsis[] = "Ellipsis";
static char __pyx_k_g_align1[] = "g_align1";
static char __pyx_k_g_align2[] = "g_align2";
static char __pyx_k_g_mobile[] = "g_mobile";
static char __pyx_k_g_target[] = "g_target";
static char __pyx_k_itemsize[] = "itemsize";
static char __pyx_k_n_frames[] = "n_frames";
static char __pyx_k_parallel[] = "parallel";
static char __pyx_k_target_g[] = "target_g";
static char __pyx_k_TypeError[] = "TypeError";
static char __pyx_k_distances[] = "distances";
static char __pyx_k_enumerate[] = "enumerate";
static char __pyx_k_reference[] = "reference";
static char __pyx_k_IndexError[] = "IndexError";
static char __pyx_k_ValueError[] = "ValueError";
static char __pyx_k_pyx_vtable[] = "__pyx_vtable__";
static char __pyx_k_target_xyz[] = "target_xyz";
static char __pyx_k_xyz_align1[] = "xyz_align1";
static char __pyx_k_xyz_align2[] = "xyz_align2";
static char __pyx_k_xyz_displ1[] = "xyz_displ1";
static char __pyx_k_xyz_displ2[] = "xyz_displ2";
static char __pyx_k_MemoryError[] = "MemoryError";
static char __pyx_k_ensure_type[] = "ensure_type";
static char __pyx_k_precentered[] = "precentered";
static char __pyx_k_rmsd_traces[] = "_rmsd_traces";
static char __pyx_k_atom_indices[] = "atom_indices";
static char __pyx_k_mdtraj_utils[] = "mdtraj.utils";
static char __pyx_k_rmsd_line_59[] = "rmsd (line 59)";
static char __pyx_k_target_frame[] = "target_frame";
static char __pyx_k_n_atoms_align[] = "n_atoms_align";
static char __pyx_k_n_atoms_displ[] = "n_atoms_displ";
static char __pyx_k_pyx_getbuffer[] = "__pyx_getbuffer";
static char __pyx_k_ref_xyz_frame[] = "ref_xyz_frame";
static char __pyx_k_allocate_buffer[] = "allocate_buffer";
static char __pyx_k_dtype_is_object[] = "dtype_is_object";
static char __pyx_k_target_n_frames[] = "target_n_frames";
static char __pyx_k_n_atoms_displace[] = "n_atoms_displace";
static char __pyx_k_ref_atom_indices[] = "ref_atom_indices";
static char __pyx_k_xyz_align_mobile[] = "xyz_align_mobile";
static char __pyx_k_xyz_align_target[] = "xyz_align_target";
static char __pyx_k_strided_and_direct[] = "<strided and direct>";
static char __pyx_k_xyz_displace_mobile[] = "xyz_displace_mobile";
static char __pyx_k_n_align_atoms_padded[] = "n_align_atoms_padded";
static char __pyx_k_n_displ_atoms_padded[] = "n_displ_atoms_padded";
static char __pyx_k_strided_and_indirect[] = "<strided and indirect>";
static char __pyx_k_superpose_atom_major[] = "superpose_atom_major";
static char __pyx_k_contiguous_and_direct[] = "<contiguous and direct>";
static char __pyx_k_MemoryView_of_r_object[] = "<MemoryView of %r object>";
static char __pyx_k_MemoryView_of_r_at_0x_x[] = "<MemoryView of %r at 0x%x>";
static char __pyx_k_contiguous_and_indirect[] = "<contiguous and indirect>";
static char __pyx_k_Cannot_index_with_type_s[] = "Cannot index with type '%s'";
static char __pyx_k_getbuffer_obj_view_flags[] = "getbuffer(obj, view, flags)";
static char __pyx_k_Dimension_d_is_not_direct[] = "Dimension %d is not direct";
static char __pyx_k_Invalid_shape_in_axis_d_d[] = "Invalid shape in axis %d: %d.";
static char __pyx_k_center_inplace_atom_major[] = "_center_inplace_atom_major";
static char __pyx_k_Index_out_of_bounds_axis_d[] = "Index out of bounds (axis %d)";
static char __pyx_k_Step_may_not_be_zero_axis_d[] = "Step may not be zero (axis %d)";
static char __pyx_k_getMultipleRMSDs_atom_major[] = "getMultipleRMSDs_atom_major";
static char __pyx_k_getMultipleRMSDs_axis_major[] = "getMultipleRMSDs_axis_major";
static char __pyx_k_itemsize_0_for_cython_array[] = "itemsize <= 0 for cython.array";
static char __pyx_k_unable_to_allocate_array_data[] = "unable to allocate array data.";
static char __pyx_k_strided_and_direct_or_indirect[] = "<strided and direct or indirect>";
static char __pyx_k_home_harrigan_source_mdtraj_mdt[] = "/home/harrigan/source/mdtraj/mdtraj/rmsd/_rmsd.pyx";
static char __pyx_k_All_dimensions_preceding_dimensi[] = "All dimensions preceding dimension %d must be indexed and not sliced";
static char __pyx_k_Buffer_view_does_not_expose_stri[] = "Buffer view does not expose strides";
static char __pyx_k_Can_only_create_a_buffer_that_is[] = "Can only create a buffer that is contiguous in memory.";
static char __pyx_k_Cannot_calculate_RMSD_of_frame_d[] = "Cannot calculate RMSD of frame %d: reference has only %d frames.";
static char __pyx_k_Cannot_transpose_memoryview_with[] = "Cannot transpose memoryview with indirect dimensions";
static char __pyx_k_Empty_shape_tuple_for_cython_arr[] = "Empty shape tuple for cython.array";
static char __pyx_k_Indirect_dimensions_not_supporte[] = "Indirect dimensions not supported";
static char __pyx_k_Input_arrays_must_have_middle_di[] = "Input arrays must have middle dimension of 4*n, found %d and %d.";
static char __pyx_k_Input_arrays_must_have_same_numb[] = "Input arrays must have same number of atoms. found %d and %d.";
static char __pyx_k_Input_trajectories_must_have_sam[] = "Input trajectories must have same number of atoms. found %d and %d.";
static char __pyx_k_Invalid_mode_expected_c_or_fortr[] = "Invalid mode, expected 'c' or 'fortran', got %s";
static char __pyx_k_Out_of_bounds_on_buffer_access_a[] = "Out of bounds on buffer access (axis %d)";
static char __pyx_k_Unable_to_convert_item_to_object[] = "Unable to convert item to object";
static char __pyx_k_atom_indices_must_be_valid_posit[] = "atom_indices must be valid positive indices";
static char __pyx_k_getMultipleAlignDisplaceRMSDs_at[] = "getMultipleAlignDisplaceRMSDs_atom_major";
static char __pyx_k_got_differing_extents_in_dimensi[] = "got differing extents in dimension %d (got %d and %d)";
static char __pyx_k_ref_atom_indices_must_be_valid_p[] = "ref_atom_indices must be valid positive indices";
static char __pyx_k_rmsd_target_reference_frame_0_at[] = "rmsd(target, reference, frame=0, atom_indices=None, parallel=True, precentered=False)\n\n    Compute RMSD of all conformations in target to a reference conformation.\n    Note, this will center the conformations in place.\n\n    Parameters\n    ----------\n    target : md.Trajectory\n        For each conformation in this trajectory, compute the RMSD to\n        a particular 'reference' conformation in another trajectory\n        object.\n    reference : md.Trajectory\n        The object containing the reference conformation to measure distances\n        to.\n    frame : int\n        The index of the conformation in `reference` to measure\n        distances to.\n    atom_indices : array_like, or None\n        The indices of the atoms to use in the RMSD calculation. If not\n        supplied, all atoms will be used.\n    ref_atom_indices : array_like, or None\n        Use these indices for the reference trajectory. If not supplied,\n        the atom indices will be the same as those for target.\n    parallel : bool\n        Use OpenMP to calculate each of the RMSDs in parallel over\n        multiple cores.\n    precentered : bool, default=False\n        Assume that the conformations are already centered at the origin, and that\n        the \"rmsd_traces\" have been computed, as is done by\n        `Trajectory.center_coordinates`. The \"rmsd_traces\" are intermediate\n        calculations needed for the RMSD calculation which can be computed\n        independently on each trajectory. Note that this has the potential to\n        be unsafe; if you use Trajectory.center_coordinates and then modify\n        the trajectory's coordinates, the center and traces will be out of\n        date and the RMSDs will be incorrect.\n\n    Examples\n    --------\n    >>> import mdtraj as md                                      # doctest: +SKIP\n    >>> rmsds = md.rmsd(trajectory, trajectory, 0)               # doctest: +SKIP\n    >>> print rmdsds                                          ""   # doctest: +SKIP\n    array([ 0.0,  0.03076187,  0.02549562, ...,  0.06230228,\n        0.00666826,  0.24364147])\n\n    The calculation is slightly faster if you precenter the trajectory\n\n    >>> trajectory.center_coordinates()\n    >>> rmsds = md.rmsd(trajectory, trajectory, 0, precentered=True)\n\n    See Also\n    --------\n    Trajectory.center_coordinates\n\n    Notes\n    -----\n    This function uses OpenMP to parallelize the calculation across\n    multiple cores. To control the number of threads launched by OpenMP,\n    you can set the environment variable ``OMP_NUM_THREADS``.\n\n    Returns\n    -------\n    rmsds : np.ndarray, shape=(target.n_frames,)\n        A 1-D numpy array of the optimal root-mean-square deviations from\n        the `frame`-th conformation in reference to each of the conformations\n        in target.\n    ";
static char __pyx_k_unable_to_allocate_shape_and_str[] = "unable to allocate shape and strides.";
static char __pyx_k_xyz_align1_and_xyz_displ1_must_c[] = "xyz_align1 and xyz_displ1 must contain the same number of frames";
static char __pyx_k_xyz_align2_and_xyz_displ2_must_c[] = "xyz_align2 and xyz_displ2 must contain the same number of frames";
static char __pyx_k_xyz_align_mobile_and_xyz_displac[] = "xyz_align_mobile and xyz_displace_mobile must contain the same number of frames";
static char __pyx_k_Cannot_calculate_RMSD_of_frame_d_2[] = "Cannot calculate RMSD of frame %d: xyz1 has only %d frames.";
static PyObject *__pyx_n_s_ASCII;
static PyObject *__pyx_kp_s_Buffer_view_does_not_expose_stri;
static PyObject *__pyx_n_s_C;
static PyObject *__pyx_kp_s_Can_only_create_a_buffer_that_is;
static PyObject *__pyx_kp_s_Cannot_calculate_RMSD_of_frame_d;
static PyObject *__pyx_kp_s_Cannot_calculate_RMSD_of_frame_d_2;
static PyObject *__pyx_kp_s_Cannot_index_with_type_s;
static PyObject *__pyx_n_s_Ellipsis;
static PyObject *__pyx_kp_s_Empty_shape_tuple_for_cython_arr;
static PyObject *__pyx_n_s_IndexError;
static PyObject *__pyx_kp_s_Indirect_dimensions_not_supporte;
static PyObject *__pyx_kp_s_Input_arrays_must_have_middle_di;
static PyObject *__pyx_kp_s_Input_arrays_must_have_same_numb;
static PyObject *__pyx_kp_s_Input_trajectories_must_have_sam;
static PyObject *__pyx_kp_s_Invalid_mode_expected_c_or_fortr;
static PyObject *__pyx_kp_s_Invalid_shape_in_axis_d_d;
static PyObject *__pyx_n_s_MemoryError;
static PyObject *__pyx_kp_s_MemoryView_of_r_at_0x_x;
static PyObject *__pyx_kp_s_MemoryView_of_r_object;
static PyObject *__pyx_n_b_O;
static PyObject *__pyx_kp_s_Out_of_bounds_on_buffer_access_a;
static PyObject *__pyx_n_s_TypeError;
static PyObject *__pyx_kp_s_Unable_to_convert_item_to_object;
static PyObject *__pyx_n_s_ValueError;
static PyObject *__pyx_n_s_all;
static PyObject *__pyx_n_s_allocate_buffer;
static PyObject *__pyx_n_s_array;
static PyObject *__pyx_n_s_asarray;
static PyObject *__pyx_n_s_atom_indices;
static PyObject *__pyx_kp_s_atom_indices_must_be_valid_posit;
static PyObject *__pyx_n_s_base;
static PyObject *__pyx_n_s_c;
static PyObject *__pyx_n_u_c;
static PyObject *__pyx_n_s_center_inplace_atom_major;
static PyObject *__pyx_n_s_class;
static PyObject *__pyx_kp_s_contiguous_and_direct;
static PyObject *__pyx_kp_s_contiguous_and_indirect;
static PyObject *__pyx_n_s_copy;
static PyObject *__pyx_n_s_distances;
static PyObject *__pyx_n_s_dtype;
static PyObject *__pyx_n_s_dtype_is_object;
static PyObject *__pyx_n_s_empty;
static PyObject *__pyx_n_s_encode;
static PyObject *__pyx_n_s_ensure_type;
static PyObject *__pyx_n_s_enumerate;
static PyObject *__pyx_n_s_error;
static PyObject *__pyx_n_s_flags;
static PyObject *__pyx_n_s_float32;
static PyObject *__pyx_n_s_format;
static PyObject *__pyx_n_s_fortran;
static PyObject *__pyx_n_u_fortran;
static PyObject *__pyx_n_s_frame;
static PyObject *__pyx_n_s_g1;
static PyObject *__pyx_n_s_g2;
static PyObject *__pyx_n_s_g_align1;
static PyObject *__pyx_n_s_g_align2;
static PyObject *__pyx_n_s_g_mobile;
static PyObject *__pyx_n_s_g_target;
static PyObject *__pyx_n_s_getMultipleAlignDisplaceRMSDs_at;
static PyObject *__pyx_n_s_getMultipleRMSDs_atom_major;
static PyObject *__pyx_n_s_getMultipleRMSDs_axis_major;
static PyObject *__pyx_kp_s_got_differing_extents_in_dimensi;
static PyObject *__pyx_kp_s_home_harrigan_source_mdtraj_mdt;
static PyObject *__pyx_n_s_i;
static PyObject *__pyx_n_s_id;
static PyObject *__pyx_n_s_import;
static PyObject *__pyx_n_s_int;
static PyObject *__pyx_n_s_itemsize;
static PyObject *__pyx_kp_s_itemsize_0_for_cython_array;
static PyObject *__pyx_n_s_main;
static PyObject *__pyx_n_s_mdtraj_utils;
static PyObject *__pyx_n_s_memview;
static PyObject *__pyx_n_s_mode;
static PyObject *__pyx_n_s_msd;
static PyObject *__pyx_n_s_n_align_atoms_padded;
static PyObject *__pyx_n_s_n_atoms;
static PyObject *__pyx_n_s_n_atoms_align;
static PyObject *__pyx_n_s_n_atoms_displ;
static PyObject *__pyx_n_s_n_atoms_displace;
static PyObject *__pyx_n_s_n_displ_atoms_padded;
static PyObject *__pyx_n_s_n_frames;
static PyObject *__pyx_n_s_name;
static PyObject *__pyx_n_s_name_2;
static PyObject *__pyx_n_s_ndim;
static PyObject *__pyx_n_s_np;
static PyObject *__pyx_n_s_numpy;
static PyObject *__pyx_n_s_obj;
static PyObject *__pyx_n_s_order;
static PyObject *__pyx_n_s_pack;
static PyObject *__pyx_n_s_parallel;
static PyObject *__pyx_n_s_precentered;
static PyObject *__pyx_n_s_pyx_getbuffer;
static PyObject *__pyx_n_s_pyx_vtable;
static PyObject *__pyx_n_s_range;
static PyObject *__pyx_n_s_ref_atom_indices;
static PyObject *__pyx_kp_s_ref_atom_indices_must_be_valid_p;
static PyObject *__pyx_n_s_ref_g;
static PyObject *__pyx_n_s_ref_xyz_frame;
static PyObject *__pyx_n_s_reference;
static PyObject *__pyx_n_s_rmsd;
static PyObject *__pyx_n_s_rmsd_2;
static PyObject *__pyx_kp_u_rmsd_line_59;
static PyObject *__pyx_kp_u_rmsd_target_reference_frame_0_at;
static PyObject *__pyx_n_s_rmsd_traces;
static PyObject *__pyx_n_s_rot;
static PyObject *__pyx_n_s_shape;
static PyObject *__pyx_n_s_size;
static PyObject *__pyx_n_s_start;
static PyObject *__pyx_n_s_step;
static PyObject *__pyx_n_s_stop;
static PyObject *__pyx_kp_s_strided_and_direct;
static PyObject *__pyx_kp_s_strided_and_direct_or_indirect;
static PyObject *__pyx_kp_s_strided_and_indirect;
static PyObject *__pyx_n_s_struct;
static PyObject *__pyx_n_s_superpose_atom_major;
static PyObject *__pyx_n_s_target;
static PyObject *__pyx_n_s_target_frame;
static PyObject *__pyx_n_s_target_g;
static PyObject *__pyx_n_s_target_n_frames;
static PyObject *__pyx_n_s_target_xyz;
static PyObject *__pyx_n_s_test;
static PyObject *__pyx_n_s_traces;
static PyObject *__pyx_kp_s_unable_to_allocate_array_data;
static PyObject *__pyx_kp_s_unable_to_allocate_shape_and_str;
static PyObject *__pyx_n_s_unpack;
static PyObject *__pyx_n_s_xyz;
static PyObject *__pyx_n_s_xyz1;
static PyObject *__pyx_n_s_xyz2;
static PyObject *__pyx_n_s_xyz_align1;
static PyObject *__pyx_kp_s_xyz_align1_and_xyz_displ1_must_c;
static PyObject *__pyx_n_s_xyz_align2;
static PyObject *__pyx_kp_s_xyz_align2_and_xyz_displ2_must_c;
static PyObject *__pyx_n_s_xyz_align_mobile;
static PyObject *__pyx_kp_s_xyz_align_mobile_and_xyz_displac;
static PyObject *__pyx_n_s_xyz_align_target;
static PyObject *__pyx_n_s_xyz_displ1;
static PyObject *__pyx_n_s_xyz_displ2;
static PyObject *__pyx_n_s_xyz_displace_mobile;
static PyObject *__pyx_n_s_zeros;
static PyObject *__pyx_pf_5_rmsd_rmsd(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_target, PyObject *__pyx_v_reference, int __pyx_v_frame, PyObject *__pyx_v_atom_indices, PyObject *__pyx_v_ref_atom_indices, PyBoolObject *__pyx_v_parallel, PyBoolObject *__pyx_v_precentered); /* proto */
static PyObject *__pyx_pf_5_rmsd_2_center_inplace_atom_major(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_xyz); /* proto */
static PyObject *__pyx_pf_5_rmsd_4getMultipleRMSDs_axis_major(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_xyz1, __Pyx_memviewslice __pyx_v_xyz2, __Pyx_memviewslice __pyx_v_g1, __Pyx_memviewslice __pyx_v_g2, int __pyx_v_frame, PyBoolObject *__pyx_v_parallel); /* proto */
static PyObject *__pyx_pf_5_rmsd_6getMultipleRMSDs_atom_major(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_xyz1, __Pyx_memviewslice __pyx_v_xyz2, __Pyx_memviewslice __pyx_v_g1, __Pyx_memviewslice __pyx_v_g2, int __pyx_v_frame, PyBoolObject *__pyx_v_parallel); /* proto */
static PyObject *__pyx_pf_5_rmsd_8superpose_atom_major(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_xyz_align_target, __Pyx_memviewslice __pyx_v_xyz_align_mobile, __Pyx_memviewslice __pyx_v_g_target, __Pyx_memviewslice __pyx_v_g_mobile, __Pyx_memviewslice __pyx_v_xyz_displace_mobile, int __pyx_v_target_frame, PyBoolObject *__pyx_v_parallel); /* proto */
static PyObject *__pyx_pf_5_rmsd_10getMultipleAlignDisplaceRMSDs_atom_major(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_xyz_align1, __Pyx_memviewslice __pyx_v_xyz_align2, __Pyx_memviewslice __pyx_v_g_align1, __Pyx_memviewslice __pyx_v_g_align2, __Pyx_memviewslice __pyx_v_xyz_displ1, __Pyx_memviewslice __pyx_v_xyz_displ2, int __pyx_v_n_atoms_align, int __pyx_v_n_atoms_displ, int __pyx_v_frame, PyBoolObject *__pyx_v_parallel); /* proto */
static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array___cinit__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_shape, Py_ssize_t __pyx_v_itemsize, PyObject *__pyx_v_format, PyObject *__pyx_v_mode, int __pyx_v_allocate_buffer); /* proto */
static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_2__getbuffer__(struct __pyx_array_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
static void __pyx_array___pyx_pf_15View_dot_MemoryView_5array_4__dealloc__(struct __pyx_array_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_5array_7memview___get__(struct __pyx_array_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_6__getattr__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_attr); /* proto */
static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_8__getitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item); /* proto */
static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_10__setitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value); /* proto */
static int __pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum___init__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v_name); /* proto */
static PyObject *__pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum_2__repr__(struct __pyx_MemviewEnum_obj *__pyx_v_self); /* proto */
static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj, int __pyx_v_flags, int __pyx_v_dtype_is_object); /* proto */
static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__dealloc__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_4__getitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index); /* proto */
static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_6__setitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto */
static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbuffer__(struct __pyx_memoryview_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_1T___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4base___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_5shape___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_7strides___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_10suboffsets___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4ndim___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_8itemsize___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_6nbytes___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4size___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static Py_ssize_t __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_10__len__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_12__repr__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_14__str__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_16is_c_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_18is_f_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_20copy(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_22copy_fortran(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static void __pyx_memoryviewslice___pyx_pf_15View_dot_MemoryView_16_memoryviewslice___dealloc__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_16_memoryviewslice_4base___get__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_tp_new_array(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_Enum(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_memoryview(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_int_0;
static PyObject *__pyx_int_1;
static PyObject *__pyx_int_3;
static PyObject *__pyx_int_neg_1;
static PyObject *__pyx_slice_;
static PyObject *__pyx_slice__4;
static PyObject *__pyx_slice__5;
static PyObject *__pyx_slice__6;
static PyObject *__pyx_slice__7;
static PyObject *__pyx_slice__8;
static PyObject *__pyx_tuple__2;
static PyObject *__pyx_tuple__3;
static PyObject *__pyx_tuple__9;
static PyObject *__pyx_slice__21;
static PyObject *__pyx_slice__22;
static PyObject *__pyx_slice__23;
static PyObject *__pyx_tuple__10;
static PyObject *__pyx_tuple__11;
static PyObject *__pyx_tuple__12;
static PyObject *__pyx_tuple__13;
static PyObject *__pyx_tuple__14;
static PyObject *__pyx_tuple__15;
static PyObject *__pyx_tuple__16;
static PyObject *__pyx_tuple__17;
static PyObject *__pyx_tuple__18;
static PyObject *__pyx_tuple__19;
static PyObject *__pyx_tuple__20;
static PyObject *__pyx_tuple__24;
static PyObject *__pyx_tuple__25;
static PyObject *__pyx_tuple__27;
static PyObject *__pyx_tuple__29;
static PyObject *__pyx_tuple__31;
static PyObject *__pyx_tuple__33;
static PyObject *__pyx_tuple__35;
static PyObject *__pyx_tuple__37;
static PyObject *__pyx_tuple__38;
static PyObject *__pyx_tuple__39;
static PyObject *__pyx_tuple__40;
static PyObject *__pyx_tuple__41;
static PyObject *__pyx_codeobj__26;
static PyObject *__pyx_codeobj__28;
static PyObject *__pyx_codeobj__30;
static PyObject *__pyx_codeobj__32;
static PyObject *__pyx_codeobj__34;
static PyObject *__pyx_codeobj__36;

/* "_rmsd.pyx":59
 * 
 * @cython.boundscheck(False)
 * def rmsd(target, reference, int frame=0, atom_indices=None,             # <<<<<<<<<<<<<<
 *          ref_atom_indices=None, bool parallel=True, bool precentered=False):
 *     """rmsd(target, reference, frame=0, atom_indices=None, parallel=True, precentered=False)
 */

/* Python wrapper */
static PyObject *__pyx_pw_5_rmsd_1rmsd(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static char __pyx_doc_5_rmsd_rmsd[] = "rmsd(target, reference, frame=0, atom_indices=None, parallel=True, precentered=False)\n\n    Compute RMSD of all conformations in target to a reference conformation.\n    Note, this will center the conformations in place.\n\n    Parameters\n    ----------\n    target : md.Trajectory\n        For each conformation in this trajectory, compute the RMSD to\n        a particular 'reference' conformation in another trajectory\n        object.\n    reference : md.Trajectory\n        The object containing the reference conformation to measure distances\n        to.\n    frame : int\n        The index of the conformation in `reference` to measure\n        distances to.\n    atom_indices : array_like, or None\n        The indices of the atoms to use in the RMSD calculation. If not\n        supplied, all atoms will be used.\n    ref_atom_indices : array_like, or None\n        Use these indices for the reference trajectory. If not supplied,\n        the atom indices will be the same as those for target.\n    parallel : bool\n        Use OpenMP to calculate each of the RMSDs in parallel over\n        multiple cores.\n    precentered : bool, default=False\n        Assume that the conformations are already centered at the origin, and that\n        the \"rmsd_traces\" have been computed, as is done by\n        `Trajectory.center_coordinates`. The \"rmsd_traces\" are intermediate\n        calculations needed for the RMSD calculation which can be computed\n        independently on each trajectory. Note that this has the potential to\n        be unsafe; if you use Trajectory.center_coordinates and then modify\n        the trajectory's coordinates, the center and traces will be out of\n        date and the RMSDs will be incorrect.\n\n    Examples\n    --------\n    >>> import mdtraj as md                                      # doctest: +SKIP\n    >>> rmsds = md.rmsd(trajectory, trajectory, 0)               # doctest: +SKIP\n    >>> print rmdsds                                          ""   # doctest: +SKIP\n    array([ 0.0,  0.03076187,  0.02549562, ...,  0.06230228,\n        0.00666826,  0.24364147])\n\n    The calculation is slightly faster if you precenter the trajectory\n\n    >>> trajectory.center_coordinates()\n    >>> rmsds = md.rmsd(trajectory, trajectory, 0, precentered=True)\n\n    See Also\n    --------\n    Trajectory.center_coordinates\n\n    Notes\n    -----\n    This function uses OpenMP to parallelize the calculation across\n    multiple cores. To control the number of threads launched by OpenMP,\n    you can set the environment variable ``OMP_NUM_THREADS``.\n\n    Returns\n    -------\n    rmsds : np.ndarray, shape=(target.n_frames,)\n        A 1-D numpy array of the optimal root-mean-square deviations from\n        the `frame`-th conformation in reference to each of the conformations\n        in target.\n    ";
static PyMethodDef __pyx_mdef_5_rmsd_1rmsd = {"rmsd", (PyCFunction)__pyx_pw_5_rmsd_1rmsd, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5_rmsd_rmsd};
static PyObject *__pyx_pw_5_rmsd_1rmsd(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_target = 0;
  PyObject *__pyx_v_reference = 0;
  int __pyx_v_frame;
  PyObject *__pyx_v_atom_indices = 0;
  PyObject *__pyx_v_ref_atom_indices = 0;
  PyBoolObject *__pyx_v_parallel = 0;
  PyBoolObject *__pyx_v_precentered = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("rmsd (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_target,&__pyx_n_s_reference,&__pyx_n_s_frame,&__pyx_n_s_atom_indices,&__pyx_n_s_ref_atom_indices,&__pyx_n_s_parallel,&__pyx_n_s_precentered,0};
    PyObject* values[7] = {0,0,0,0,0,0,0};
    values[3] = ((PyObject *)Py_None);

    /* "_rmsd.pyx":60
 * @cython.boundscheck(False)
 * def rmsd(target, reference, int frame=0, atom_indices=None,
 *          ref_atom_indices=None, bool parallel=True, bool precentered=False):             # <<<<<<<<<<<<<<
 *     """rmsd(target, reference, frame=0, atom_indices=None, parallel=True, precentered=False)
 * 
 */
    values[4] = ((PyObject *)Py_None);
    values[5] = (PyObject *)((PyBoolObject *)Py_True);
    values[6] = (PyObject *)((PyBoolObject *)Py_False);
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_target)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        case  1:
        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_reference)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("rmsd", 0, 2, 7, 1); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  2:
        if (kw_args > 0) {
          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_frame);
          if (value) { values[2] = value; kw_args--; }
        }
        case  3:
        if (kw_args > 0) {
          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_atom_indices);
          if (value) { values[3] = value; kw_args--; }
        }
        case  4:
        if (kw_args > 0) {
          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ref_atom_indices);
          if (value) { values[4] = value; kw_args--; }
        }
        case  5:
        if (kw_args > 0) {
          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_parallel);
          if (value) { values[5] = value; kw_args--; }
        }
        case  6:
        if (kw_args > 0) {
          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_precentered);
          if (value) { values[6] = value; kw_args--; }
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "rmsd") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
      }
    } else {
      switch (PyTuple_GET_SIZE(__pyx_args)) {
        case  7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        break;
        default: goto __pyx_L5_argtuple_error;
      }
    }
    __pyx_v_target = values[0];
    __pyx_v_reference = values[1];
    if (values[2]) {
      __pyx_v_frame = __Pyx_PyInt_As_int(values[2]); if (unlikely((__pyx_v_frame == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    } else {
      __pyx_v_frame = ((int)0);
    }
    __pyx_v_atom_indices = values[3];
    __pyx_v_ref_atom_indices = values[4];
    __pyx_v_parallel = ((PyBoolObject *)values[5]);
    __pyx_v_precentered = ((PyBoolObject *)values[6]);
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("rmsd", 0, 2, 7, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
  __pyx_L3_error:;
  __Pyx_AddTraceback("_rmsd.rmsd", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_parallel), __pyx_ptype_7cpython_4bool_bool, 1, "parallel", 0))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 60; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_precentered), __pyx_ptype_7cpython_4bool_bool, 1, "precentered", 0))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 60; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_r = __pyx_pf_5_rmsd_rmsd(__pyx_self, __pyx_v_target, __pyx_v_reference, __pyx_v_frame, __pyx_v_atom_indices, __pyx_v_ref_atom_indices, __pyx_v_parallel, __pyx_v_precentered);

  /* "_rmsd.pyx":59
 * 
 * @cython.boundscheck(False)
 * def rmsd(target, reference, int frame=0, atom_indices=None,             # <<<<<<<<<<<<<<
 *          ref_atom_indices=None, bool parallel=True, bool precentered=False):
 *     """rmsd(target, reference, frame=0, atom_indices=None, parallel=True, precentered=False)
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5_rmsd_rmsd(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_target, PyObject *__pyx_v_reference, int __pyx_v_frame, PyObject *__pyx_v_atom_indices, PyObject *__pyx_v_ref_atom_indices, PyBoolObject *__pyx_v_parallel, PyBoolObject *__pyx_v_precentered) {
  int __pyx_v_i;
  float __pyx_v_msd;
  float __pyx_v_ref_g;
  __Pyx_memviewslice __pyx_v_target_xyz = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_ref_xyz_frame = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_target_g = { 0, 0, { 0 }, { 0 }, { 0 } };
  int __pyx_v_target_n_frames;
  int __pyx_v_n_atoms;
  __Pyx_memviewslice __pyx_v_distances = { 0, 0, { 0 }, { 0 }, { 0 } };
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  int __pyx_t_8;
  int __pyx_t_9;
  Py_ssize_t __pyx_t_10;
  __Pyx_memviewslice __pyx_t_11 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_t_12 = { 0, 0, { 0 }, { 0 }, { 0 } };
  int __pyx_t_13;
  __Pyx_memviewslice __pyx_t_14 = { 0, 0, { 0 }, { 0 }, { 0 } };
  float __pyx_t_15;
  Py_ssize_t __pyx_t_16;
  Py_ssize_t __pyx_t_17;
  Py_ssize_t __pyx_t_18;
  Py_ssize_t __pyx_t_19;
  Py_ssize_t __pyx_t_20;
  Py_ssize_t __pyx_t_21;
  int __pyx_t_22;
  Py_ssize_t __pyx_t_23;
  Py_ssize_t __pyx_t_24;
  Py_ssize_t __pyx_t_25;
  Py_ssize_t __pyx_t_26;
  Py_ssize_t __pyx_t_27;
  Py_ssize_t __pyx_t_28;
  Py_ssize_t __pyx_t_29;
  Py_ssize_t __pyx_t_30;
  Py_ssize_t __pyx_t_31;
  Py_ssize_t __pyx_t_32;
  Py_ssize_t __pyx_t_33;
  Py_ssize_t __pyx_t_34;
  Py_ssize_t __pyx_t_35;
  Py_ssize_t __pyx_t_36;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("rmsd", 0);
  __Pyx_INCREF(__pyx_v_atom_indices);
  __Pyx_INCREF(__pyx_v_ref_atom_indices);

  /* "_rmsd.pyx":128
 *     """
 *     # import time
 *     if atom_indices is None:             # <<<<<<<<<<<<<<
 *         atom_indices = slice(None)
 *     else:
 */
  __pyx_t_1 = (__pyx_v_atom_indices == Py_None);
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "_rmsd.pyx":129
 *     # import time
 *     if atom_indices is None:
 *         atom_indices = slice(None)             # <<<<<<<<<<<<<<
 *     else:
 *         atom_indices = ensure_type(np.asarray(atom_indices), dtype=np.int, ndim=1, name='atom_indices')
 */
    __pyx_t_3 = __pyx_slice_;
    __Pyx_INCREF(__pyx_t_3);
    __Pyx_DECREF_SET(__pyx_v_atom_indices, __pyx_t_3);
    __pyx_t_3 = 0;

    /* "_rmsd.pyx":128
 *     """
 *     # import time
 *     if atom_indices is None:             # <<<<<<<<<<<<<<
 *         atom_indices = slice(None)
 *     else:
 */
    goto __pyx_L3;
  }

  /* "_rmsd.pyx":131
 *         atom_indices = slice(None)
 *     else:
 *         atom_indices = ensure_type(np.asarray(atom_indices), dtype=np.int, ndim=1, name='atom_indices')             # <<<<<<<<<<<<<<
 *         if not np.all((atom_indices >= 0) *
 *                               (atom_indices < target.xyz.shape[1]) *
 */
  /*else*/ {
    __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_ensure_type); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_5 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_asarray); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_5 = NULL;
    if (CYTHON_COMPILING_IN_CPYTHON && unlikely(PyMethod_Check(__pyx_t_6))) {
      __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_6);
      if (likely(__pyx_t_5)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_6);
        __Pyx_INCREF(__pyx_t_5);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_6, function);
      }
    }
    if (!__pyx_t_5) {
      __pyx_t_4 = __Pyx_PyObject_CallOneArg(__pyx_t_6, __pyx_v_atom_indices); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_4);
    } else {
      __pyx_t_7 = PyTuple_New(1+1); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_GIVEREF(__pyx_t_5); PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_t_5); __pyx_t_5 = NULL;
      __Pyx_INCREF(__pyx_v_atom_indices);
      __Pyx_GIVEREF(__pyx_v_atom_indices);
      PyTuple_SET_ITEM(__pyx_t_7, 0+1, __pyx_v_atom_indices);
      __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_6, __pyx_t_7, NULL); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_4);
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    }
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_6 = PyTuple_New(1); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_6, 0, __pyx_t_4);
    __pyx_t_4 = 0;
    __pyx_t_4 = PyDict_New(); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_7 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_int); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    if (PyDict_SetItem(__pyx_t_4, __pyx_n_s_dtype, __pyx_t_5) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    if (PyDict_SetItem(__pyx_t_4, __pyx_n_s_ndim, __pyx_int_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    if (PyDict_SetItem(__pyx_t_4, __pyx_n_s_name, __pyx_n_s_atom_indices) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_t_5 = __Pyx_PyObject_Call(__pyx_t_3, __pyx_t_6, __pyx_t_4); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __Pyx_DECREF_SET(__pyx_v_atom_indices, __pyx_t_5);
    __pyx_t_5 = 0;

    /* "_rmsd.pyx":132
 *     else:
 *         atom_indices = ensure_type(np.asarray(atom_indices), dtype=np.int, ndim=1, name='atom_indices')
 *         if not np.all((atom_indices >= 0) *             # <<<<<<<<<<<<<<
 *                               (atom_indices < target.xyz.shape[1]) *
 *                               (atom_indices < reference.xyz.shape[1])):
 */
    __pyx_t_4 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_all); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_t_4 = PyObject_RichCompare(__pyx_v_atom_indices, __pyx_int_0, Py_GE); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":133
 *         atom_indices = ensure_type(np.asarray(atom_indices), dtype=np.int, ndim=1, name='atom_indices')
 *         if not np.all((atom_indices >= 0) *
 *                               (atom_indices < target.xyz.shape[1]) *             # <<<<<<<<<<<<<<
 *                               (atom_indices < reference.xyz.shape[1])):
 *             raise ValueError("atom_indices must be valid positive indices")
 */
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_target, __pyx_n_s_xyz); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 133; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_shape); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 133; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_GetItemInt(__pyx_t_7, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 133; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_7 = PyObject_RichCompare(__pyx_v_atom_indices, __pyx_t_3, Py_LT); __Pyx_XGOTREF(__pyx_t_7); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 133; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

    /* "_rmsd.pyx":132
 *     else:
 *         atom_indices = ensure_type(np.asarray(atom_indices), dtype=np.int, ndim=1, name='atom_indices')
 *         if not np.all((atom_indices >= 0) *             # <<<<<<<<<<<<<<
 *                               (atom_indices < target.xyz.shape[1]) *
 *                               (atom_indices < reference.xyz.shape[1])):
 */
    __pyx_t_3 = PyNumber_Multiply(__pyx_t_4, __pyx_t_7); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

    /* "_rmsd.pyx":134
 *         if not np.all((atom_indices >= 0) *
 *                               (atom_indices < target.xyz.shape[1]) *
 *                               (atom_indices < reference.xyz.shape[1])):             # <<<<<<<<<<<<<<
 *             raise ValueError("atom_indices must be valid positive indices")
 * 
 */
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_reference, __pyx_n_s_xyz); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 134; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_shape); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 134; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_7 = __Pyx_GetItemInt(__pyx_t_4, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_7 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 134; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_t_4 = PyObject_RichCompare(__pyx_v_atom_indices, __pyx_t_7, Py_LT); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 134; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

    /* "_rmsd.pyx":133
 *         atom_indices = ensure_type(np.asarray(atom_indices), dtype=np.int, ndim=1, name='atom_indices')
 *         if not np.all((atom_indices >= 0) *
 *                               (atom_indices < target.xyz.shape[1]) *             # <<<<<<<<<<<<<<
 *                               (atom_indices < reference.xyz.shape[1])):
 *             raise ValueError("atom_indices must be valid positive indices")
 */
    __pyx_t_7 = PyNumber_Multiply(__pyx_t_3, __pyx_t_4); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 133; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_t_4 = NULL;
    if (CYTHON_COMPILING_IN_CPYTHON && unlikely(PyMethod_Check(__pyx_t_6))) {
      __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_6);
      if (likely(__pyx_t_4)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_6);
        __Pyx_INCREF(__pyx_t_4);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_6, function);
      }
    }
    if (!__pyx_t_4) {
      __pyx_t_5 = __Pyx_PyObject_CallOneArg(__pyx_t_6, __pyx_t_7); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
      __Pyx_GOTREF(__pyx_t_5);
    } else {
      __pyx_t_3 = PyTuple_New(1+1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_3);
      __Pyx_GIVEREF(__pyx_t_4); PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_4); __pyx_t_4 = NULL;
      __Pyx_GIVEREF(__pyx_t_7);
      PyTuple_SET_ITEM(__pyx_t_3, 0+1, __pyx_t_7);
      __pyx_t_7 = 0;
      __pyx_t_5 = __Pyx_PyObject_Call(__pyx_t_6, __pyx_t_3, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    }
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;

    /* "_rmsd.pyx":132
 *     else:
 *         atom_indices = ensure_type(np.asarray(atom_indices), dtype=np.int, ndim=1, name='atom_indices')
 *         if not np.all((atom_indices >= 0) *             # <<<<<<<<<<<<<<
 *                               (atom_indices < target.xyz.shape[1]) *
 *                               (atom_indices < reference.xyz.shape[1])):
 */
    __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_1 = ((!__pyx_t_2) != 0);
    if (__pyx_t_1) {

      /* "_rmsd.pyx":135
 *                               (atom_indices < target.xyz.shape[1]) *
 *                               (atom_indices < reference.xyz.shape[1])):
 *             raise ValueError("atom_indices must be valid positive indices")             # <<<<<<<<<<<<<<
 * 
 *     if ref_atom_indices is None:
 */
      __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__2, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 135; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_Raise(__pyx_t_5, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      {__pyx_filename = __pyx_f[0]; __pyx_lineno = 135; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "_rmsd.pyx":132
 *     else:
 *         atom_indices = ensure_type(np.asarray(atom_indices), dtype=np.int, ndim=1, name='atom_indices')
 *         if not np.all((atom_indices >= 0) *             # <<<<<<<<<<<<<<
 *                               (atom_indices < target.xyz.shape[1]) *
 *                               (atom_indices < reference.xyz.shape[1])):
 */
    }
  }
  __pyx_L3:;

  /* "_rmsd.pyx":137
 *             raise ValueError("atom_indices must be valid positive indices")
 * 
 *     if ref_atom_indices is None:             # <<<<<<<<<<<<<<
 *         ref_atom_indices = atom_indices
 * 
 */
  __pyx_t_1 = (__pyx_v_ref_atom_indices == Py_None);
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "_rmsd.pyx":138
 * 
 *     if ref_atom_indices is None:
 *         ref_atom_indices = atom_indices             # <<<<<<<<<<<<<<
 * 
 *     if not isinstance(ref_atom_indices, slice):
 */
    __Pyx_INCREF(__pyx_v_atom_indices);
    __Pyx_DECREF_SET(__pyx_v_ref_atom_indices, __pyx_v_atom_indices);

    /* "_rmsd.pyx":137
 *             raise ValueError("atom_indices must be valid positive indices")
 * 
 *     if ref_atom_indices is None:             # <<<<<<<<<<<<<<
 *         ref_atom_indices = atom_indices
 * 
 */
  }

  /* "_rmsd.pyx":140
 *         ref_atom_indices = atom_indices
 * 
 *     if not isinstance(ref_atom_indices, slice):             # <<<<<<<<<<<<<<
 *         ref_atom_indices = ensure_type(np.asarray(ref_atom_indices), dtype=np.int, ndim=1, name='ref_atom_indices')
 *         if not np.all((ref_atom_indices >= 0) *
 */
  __pyx_t_2 = PySlice_Check(__pyx_v_ref_atom_indices); 
  __pyx_t_1 = ((!(__pyx_t_2 != 0)) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":141
 * 
 *     if not isinstance(ref_atom_indices, slice):
 *         ref_atom_indices = ensure_type(np.asarray(ref_atom_indices), dtype=np.int, ndim=1, name='ref_atom_indices')             # <<<<<<<<<<<<<<
 *         if not np.all((ref_atom_indices >= 0) *
 *                               (ref_atom_indices < target.xyz.shape[1]) *
 */
    __pyx_t_5 = __Pyx_GetModuleGlobalName(__pyx_n_s_ensure_type); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_asarray); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = NULL;
    if (CYTHON_COMPILING_IN_CPYTHON && unlikely(PyMethod_Check(__pyx_t_7))) {
      __pyx_t_3 = PyMethod_GET_SELF(__pyx_t_7);
      if (likely(__pyx_t_3)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_7);
        __Pyx_INCREF(__pyx_t_3);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_7, function);
      }
    }
    if (!__pyx_t_3) {
      __pyx_t_6 = __Pyx_PyObject_CallOneArg(__pyx_t_7, __pyx_v_ref_atom_indices); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_6);
    } else {
      __pyx_t_4 = PyTuple_New(1+1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_4);
      __Pyx_GIVEREF(__pyx_t_3); PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_3); __pyx_t_3 = NULL;
      __Pyx_INCREF(__pyx_v_ref_atom_indices);
      __Pyx_GIVEREF(__pyx_v_ref_atom_indices);
      PyTuple_SET_ITEM(__pyx_t_4, 0+1, __pyx_v_ref_atom_indices);
      __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_7, __pyx_t_4, NULL); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    }
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_7 = PyTuple_New(1); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_GIVEREF(__pyx_t_6);
    PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_t_6);
    __pyx_t_6 = 0;
    __pyx_t_6 = PyDict_New(); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_4 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_int); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_dtype, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_ndim, __pyx_int_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_name, __pyx_n_s_ref_atom_indices) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_7, __pyx_t_6); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_DECREF_SET(__pyx_v_ref_atom_indices, __pyx_t_3);
    __pyx_t_3 = 0;

    /* "_rmsd.pyx":142
 *     if not isinstance(ref_atom_indices, slice):
 *         ref_atom_indices = ensure_type(np.asarray(ref_atom_indices), dtype=np.int, ndim=1, name='ref_atom_indices')
 *         if not np.all((ref_atom_indices >= 0) *             # <<<<<<<<<<<<<<
 *                               (ref_atom_indices < target.xyz.shape[1]) *
 *                               (ref_atom_indices < reference.xyz.shape[1])):
 */
    __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 142; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_all); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 142; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_6 = PyObject_RichCompare(__pyx_v_ref_atom_indices, __pyx_int_0, Py_GE); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 142; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":143
 *         ref_atom_indices = ensure_type(np.asarray(ref_atom_indices), dtype=np.int, ndim=1, name='ref_atom_indices')
 *         if not np.all((ref_atom_indices >= 0) *
 *                               (ref_atom_indices < target.xyz.shape[1]) *             # <<<<<<<<<<<<<<
 *                               (ref_atom_indices < reference.xyz.shape[1])):
 *             raise ValueError("ref_atom_indices must be valid positive indices")
 */
    __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_target, __pyx_n_s_xyz); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 143; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_shape); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 143; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_GetItemInt(__pyx_t_4, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_5 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 143; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_t_4 = PyObject_RichCompare(__pyx_v_ref_atom_indices, __pyx_t_5, Py_LT); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 143; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;

    /* "_rmsd.pyx":142
 *     if not isinstance(ref_atom_indices, slice):
 *         ref_atom_indices = ensure_type(np.asarray(ref_atom_indices), dtype=np.int, ndim=1, name='ref_atom_indices')
 *         if not np.all((ref_atom_indices >= 0) *             # <<<<<<<<<<<<<<
 *                               (ref_atom_indices < target.xyz.shape[1]) *
 *                               (ref_atom_indices < reference.xyz.shape[1])):
 */
    __pyx_t_5 = PyNumber_Multiply(__pyx_t_6, __pyx_t_4); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 142; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "_rmsd.pyx":144
 *         if not np.all((ref_atom_indices >= 0) *
 *                               (ref_atom_indices < target.xyz.shape[1]) *
 *                               (ref_atom_indices < reference.xyz.shape[1])):             # <<<<<<<<<<<<<<
 *             raise ValueError("ref_atom_indices must be valid positive indices")
 * 
 */
    __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_reference, __pyx_n_s_xyz); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 144; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_shape); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 144; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_t_4 = __Pyx_GetItemInt(__pyx_t_6, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_4 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 144; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_6 = PyObject_RichCompare(__pyx_v_ref_atom_indices, __pyx_t_4, Py_LT); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 144; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "_rmsd.pyx":143
 *         ref_atom_indices = ensure_type(np.asarray(ref_atom_indices), dtype=np.int, ndim=1, name='ref_atom_indices')
 *         if not np.all((ref_atom_indices >= 0) *
 *                               (ref_atom_indices < target.xyz.shape[1]) *             # <<<<<<<<<<<<<<
 *                               (ref_atom_indices < reference.xyz.shape[1])):
 *             raise ValueError("ref_atom_indices must be valid positive indices")
 */
    __pyx_t_4 = PyNumber_Multiply(__pyx_t_5, __pyx_t_6); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 143; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_6 = NULL;
    if (CYTHON_COMPILING_IN_CPYTHON && unlikely(PyMethod_Check(__pyx_t_7))) {
      __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_7);
      if (likely(__pyx_t_6)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_7);
        __Pyx_INCREF(__pyx_t_6);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_7, function);
      }
    }
    if (!__pyx_t_6) {
      __pyx_t_3 = __Pyx_PyObject_CallOneArg(__pyx_t_7, __pyx_t_4); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 142; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
      __Pyx_GOTREF(__pyx_t_3);
    } else {
      __pyx_t_5 = PyTuple_New(1+1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 142; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_GIVEREF(__pyx_t_6); PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_6); __pyx_t_6 = NULL;
      __Pyx_GIVEREF(__pyx_t_4);
      PyTuple_SET_ITEM(__pyx_t_5, 0+1, __pyx_t_4);
      __pyx_t_4 = 0;
      __pyx_t_3 = __Pyx_PyObject_Call(__pyx_t_7, __pyx_t_5, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 142; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_3);
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    }
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

    /* "_rmsd.pyx":142
 *     if not isinstance(ref_atom_indices, slice):
 *         ref_atom_indices = ensure_type(np.asarray(ref_atom_indices), dtype=np.int, ndim=1, name='ref_atom_indices')
 *         if not np.all((ref_atom_indices >= 0) *             # <<<<<<<<<<<<<<
 *                               (ref_atom_indices < target.xyz.shape[1]) *
 *                               (ref_atom_indices < reference.xyz.shape[1])):
 */
    __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 142; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_2 = ((!__pyx_t_1) != 0);
    if (__pyx_t_2) {

      /* "_rmsd.pyx":145
 *                               (ref_atom_indices < target.xyz.shape[1]) *
 *                               (ref_atom_indices < reference.xyz.shape[1])):
 *             raise ValueError("ref_atom_indices must be valid positive indices")             # <<<<<<<<<<<<<<
 * 
 *     # Error checks
 */
      __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__3, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_3);
      __Pyx_Raise(__pyx_t_3, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      {__pyx_filename = __pyx_f[0]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "_rmsd.pyx":142
 *     if not isinstance(ref_atom_indices, slice):
 *         ref_atom_indices = ensure_type(np.asarray(ref_atom_indices), dtype=np.int, ndim=1, name='ref_atom_indices')
 *         if not np.all((ref_atom_indices >= 0) *             # <<<<<<<<<<<<<<
 *                               (ref_atom_indices < target.xyz.shape[1]) *
 *                               (ref_atom_indices < reference.xyz.shape[1])):
 */
    }

    /* "_rmsd.pyx":140
 *         ref_atom_indices = atom_indices
 * 
 *     if not isinstance(ref_atom_indices, slice):             # <<<<<<<<<<<<<<
 *         ref_atom_indices = ensure_type(np.asarray(ref_atom_indices), dtype=np.int, ndim=1, name='ref_atom_indices')
 *         if not np.all((ref_atom_indices >= 0) *
 */
  }

  /* "_rmsd.pyx":148
 * 
 *     # Error checks
 *     assert (target.xyz.ndim == 3) and (reference.xyz.ndim == 3) and (target.xyz.shape[2]) == 3 and (reference.xyz.shape[2] == 3)             # <<<<<<<<<<<<<<
 *     if not (target.xyz.shape[1]  == reference.xyz.shape[1]):
 *         raise ValueError("Input trajectories must have same number of atoms. "
 */
  #ifndef CYTHON_WITHOUT_ASSERTIONS
  if (unlikely(!Py_OptimizeFlag)) {
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_target, __pyx_n_s_xyz); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_ndim); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyInt_EqObjC(__pyx_t_7, __pyx_int_3, 3, 0); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    if (__pyx_t_1) {
    } else {
      __pyx_t_2 = __pyx_t_1;
      goto __pyx_L8_bool_binop_done;
    }
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reference, __pyx_n_s_xyz); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_ndim); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyInt_EqObjC(__pyx_t_7, __pyx_int_3, 3, 0); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    if (__pyx_t_1) {
    } else {
      __pyx_t_2 = __pyx_t_1;
      goto __pyx_L8_bool_binop_done;
    }
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_target, __pyx_n_s_xyz); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_shape); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_GetItemInt(__pyx_t_7, 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_7 = __Pyx_PyInt_EqObjC(__pyx_t_3, __pyx_int_3, 3, 0); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    if (__pyx_t_1) {
    } else {
      __pyx_t_2 = __pyx_t_1;
      goto __pyx_L8_bool_binop_done;
    }
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_reference, __pyx_n_s_xyz); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_shape); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_7 = __Pyx_GetItemInt(__pyx_t_3, 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_7 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyInt_EqObjC(__pyx_t_7, __pyx_int_3, 3, 0); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_2 = __pyx_t_1;
    __pyx_L8_bool_binop_done:;
    if (unlikely(!__pyx_t_2)) {
      PyErr_SetNone(PyExc_AssertionError);
      {__pyx_filename = __pyx_f[0]; __pyx_lineno = 148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
  }
  #endif

  /* "_rmsd.pyx":149
 *     # Error checks
 *     assert (target.xyz.ndim == 3) and (reference.xyz.ndim == 3) and (target.xyz.shape[2]) == 3 and (reference.xyz.shape[2] == 3)
 *     if not (target.xyz.shape[1]  == reference.xyz.shape[1]):             # <<<<<<<<<<<<<<
 *         raise ValueError("Input trajectories must have same number of atoms. "
 *                          "found %d and %d." % (target.xyz.shape[1], reference.xyz.shape[1]))
 */
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_target, __pyx_n_s_xyz); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_shape); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_GetItemInt(__pyx_t_7, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_reference, __pyx_n_s_xyz); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_shape); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_7 = __Pyx_GetItemInt(__pyx_t_5, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_7 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_5 = PyObject_RichCompare(__pyx_t_3, __pyx_t_7, Py_EQ); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_1 = ((!__pyx_t_2) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":151
 *     if not (target.xyz.shape[1]  == reference.xyz.shape[1]):
 *         raise ValueError("Input trajectories must have same number of atoms. "
 *                          "found %d and %d." % (target.xyz.shape[1], reference.xyz.shape[1]))             # <<<<<<<<<<<<<<
 *     if frame >= reference.xyz.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: reference has "
 */
    __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_target, __pyx_n_s_xyz); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 151; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_shape); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 151; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_GetItemInt(__pyx_t_7, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_5 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 151; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_reference, __pyx_n_s_xyz); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 151; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_shape); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 151; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_7 = __Pyx_GetItemInt(__pyx_t_3, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_7 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 151; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = PyTuple_New(2); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 151; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_7);
    PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_7);
    __pyx_t_5 = 0;
    __pyx_t_7 = 0;
    __pyx_t_7 = __Pyx_PyString_Format(__pyx_kp_s_Input_trajectories_must_have_sam, __pyx_t_3); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 151; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

    /* "_rmsd.pyx":150
 *     assert (target.xyz.ndim == 3) and (reference.xyz.ndim == 3) and (target.xyz.shape[2]) == 3 and (reference.xyz.shape[2] == 3)
 *     if not (target.xyz.shape[1]  == reference.xyz.shape[1]):
 *         raise ValueError("Input trajectories must have same number of atoms. "             # <<<<<<<<<<<<<<
 *                          "found %d and %d." % (target.xyz.shape[1], reference.xyz.shape[1]))
 *     if frame >= reference.xyz.shape[0]:
 */
    __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 150; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_GIVEREF(__pyx_t_7);
    PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_7);
    __pyx_t_7 = 0;
    __pyx_t_7 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_3, NULL); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 150; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __Pyx_Raise(__pyx_t_7, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 150; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":149
 *     # Error checks
 *     assert (target.xyz.ndim == 3) and (reference.xyz.ndim == 3) and (target.xyz.shape[2]) == 3 and (reference.xyz.shape[2] == 3)
 *     if not (target.xyz.shape[1]  == reference.xyz.shape[1]):             # <<<<<<<<<<<<<<
 *         raise ValueError("Input trajectories must have same number of atoms. "
 *                          "found %d and %d." % (target.xyz.shape[1], reference.xyz.shape[1]))
 */
  }

  /* "_rmsd.pyx":152
 *         raise ValueError("Input trajectories must have same number of atoms. "
 *                          "found %d and %d." % (target.xyz.shape[1], reference.xyz.shape[1]))
 *     if frame >= reference.xyz.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("Cannot calculate RMSD of frame %d: reference has "
 *                          "only %d frames." % (frame, reference.xyz.shape[0]))
 */
  __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_frame); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 152; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reference, __pyx_n_s_xyz); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 152; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_shape); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 152; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_GetItemInt(__pyx_t_5, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 152; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_5 = PyObject_RichCompare(__pyx_t_7, __pyx_t_3, Py_GE); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 152; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 152; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (__pyx_t_1) {

    /* "_rmsd.pyx":154
 *     if frame >= reference.xyz.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: reference has "
 *                          "only %d frames." % (frame, reference.xyz.shape[0]))             # <<<<<<<<<<<<<<
 * 
 *     # static declarations
 */
    __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_frame); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 154; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reference, __pyx_n_s_xyz); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 154; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_shape); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 154; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_GetItemInt(__pyx_t_7, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 154; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_7 = PyTuple_New(2); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 154; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_3);
    __pyx_t_5 = 0;
    __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyString_Format(__pyx_kp_s_Cannot_calculate_RMSD_of_frame_d, __pyx_t_7); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 154; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

    /* "_rmsd.pyx":153
 *                          "found %d and %d." % (target.xyz.shape[1], reference.xyz.shape[1]))
 *     if frame >= reference.xyz.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: reference has "             # <<<<<<<<<<<<<<
 *                          "only %d frames." % (frame, reference.xyz.shape[0]))
 * 
 */
    __pyx_t_7 = PyTuple_New(1); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 153; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_t_3);
    __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_7, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 153; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 153; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":152
 *         raise ValueError("Input trajectories must have same number of atoms. "
 *                          "found %d and %d." % (target.xyz.shape[1], reference.xyz.shape[1]))
 *     if frame >= reference.xyz.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("Cannot calculate RMSD of frame %d: reference has "
 *                          "only %d frames." % (frame, reference.xyz.shape[0]))
 */
  }

  /* "_rmsd.pyx":162
 *     cdef float[:, :] ref_xyz_frame
 *     cdef float[:] target_g
 *     cdef int target_n_frames = target.xyz.shape[0]             # <<<<<<<<<<<<<<
 *     cdef int n_atoms = target.xyz.shape[1] if np.all(atom_indices == slice(None)) else len(atom_indices)
 * 
 */
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_target, __pyx_n_s_xyz); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 162; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_shape); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 162; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_GetItemInt(__pyx_t_7, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 162; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_8 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_8 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 162; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_v_target_n_frames = __pyx_t_8;

  /* "_rmsd.pyx":163
 *     cdef float[:] target_g
 *     cdef int target_n_frames = target.xyz.shape[0]
 *     cdef int n_atoms = target.xyz.shape[1] if np.all(atom_indices == slice(None)) else len(atom_indices)             # <<<<<<<<<<<<<<
 * 
 *     # make sure *every* frame in target_xyz is in proper c-major order
 */
  __pyx_t_7 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_all); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_7 = PyObject_RichCompare(__pyx_v_atom_indices, __pyx_slice__4, Py_EQ); __Pyx_XGOTREF(__pyx_t_7); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_4 = NULL;
  if (CYTHON_COMPILING_IN_CPYTHON && unlikely(PyMethod_Check(__pyx_t_5))) {
    __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_5);
    if (likely(__pyx_t_4)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
      __Pyx_INCREF(__pyx_t_4);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_5, function);
    }
  }
  if (!__pyx_t_4) {
    __pyx_t_3 = __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_t_7); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __Pyx_GOTREF(__pyx_t_3);
  } else {
    __pyx_t_6 = PyTuple_New(1+1); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_GIVEREF(__pyx_t_4); PyTuple_SET_ITEM(__pyx_t_6, 0, __pyx_t_4); __pyx_t_4 = NULL;
    __Pyx_GIVEREF(__pyx_t_7);
    PyTuple_SET_ITEM(__pyx_t_6, 0+1, __pyx_t_7);
    __pyx_t_7 = 0;
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_6, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  }
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  if (__pyx_t_1) {
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_target, __pyx_n_s_xyz); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_shape); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_GetItemInt(__pyx_t_5, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_9 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_9 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_8 = __pyx_t_9;
  } else {
    __pyx_t_10 = PyObject_Length(__pyx_v_atom_indices); if (unlikely(__pyx_t_10 == -1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_t_8 = __pyx_t_10;
  }
  __pyx_v_n_atoms = __pyx_t_8;

  /* "_rmsd.pyx":166
 * 
 *     # make sure *every* frame in target_xyz is in proper c-major order
 *     target_xyz = np.asarray(target.xyz[:, atom_indices, :], order='C', dtype=np.float32)             # <<<<<<<<<<<<<<
 *     # only extract the `frame`-th conformation from ref_xyz
 *     ref_xyz_frame = np.asarray(reference.xyz[frame, ref_atom_indices, :], order='C', dtype=np.float32)
 */
  __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_asarray); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_target, __pyx_n_s_xyz); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_6 = PyTuple_New(3); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_INCREF(__pyx_slice__5);
  __Pyx_GIVEREF(__pyx_slice__5);
  PyTuple_SET_ITEM(__pyx_t_6, 0, __pyx_slice__5);
  __Pyx_INCREF(__pyx_v_atom_indices);
  __Pyx_GIVEREF(__pyx_v_atom_indices);
  PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_v_atom_indices);
  __Pyx_INCREF(__pyx_slice__6);
  __Pyx_GIVEREF(__pyx_slice__6);
  PyTuple_SET_ITEM(__pyx_t_6, 2, __pyx_slice__6);
  __pyx_t_7 = PyObject_GetItem(__pyx_t_3, __pyx_t_6); if (unlikely(__pyx_t_7 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_6 = PyTuple_New(1); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_GIVEREF(__pyx_t_7);
  PyTuple_SET_ITEM(__pyx_t_6, 0, __pyx_t_7);
  __pyx_t_7 = 0;
  __pyx_t_7 = PyDict_New(); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  if (PyDict_SetItem(__pyx_t_7, __pyx_n_s_order, __pyx_n_s_C) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_float32); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  if (PyDict_SetItem(__pyx_t_7, __pyx_n_s_dtype, __pyx_t_4) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_6, __pyx_t_7); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_11 = __Pyx_PyObject_to_MemoryviewSlice_dsdsds_float(__pyx_t_4);
  if (unlikely(!__pyx_t_11.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_v_target_xyz = __pyx_t_11;
  __pyx_t_11.memview = NULL;
  __pyx_t_11.data = NULL;

  /* "_rmsd.pyx":168
 *     target_xyz = np.asarray(target.xyz[:, atom_indices, :], order='C', dtype=np.float32)
 *     # only extract the `frame`-th conformation from ref_xyz
 *     ref_xyz_frame = np.asarray(reference.xyz[frame, ref_atom_indices, :], order='C', dtype=np.float32)             # <<<<<<<<<<<<<<
 * 
 *     # t0 = time.time()
 */
  __pyx_t_4 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_asarray); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_reference, __pyx_n_s_xyz); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_frame); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_5 = PyTuple_New(3); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_GIVEREF(__pyx_t_6);
  PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_6);
  __Pyx_INCREF(__pyx_v_ref_atom_indices);
  __Pyx_GIVEREF(__pyx_v_ref_atom_indices);
  PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_v_ref_atom_indices);
  __Pyx_INCREF(__pyx_slice__7);
  __Pyx_GIVEREF(__pyx_slice__7);
  PyTuple_SET_ITEM(__pyx_t_5, 2, __pyx_slice__7);
  __pyx_t_6 = 0;
  __pyx_t_6 = PyObject_GetItem(__pyx_t_4, __pyx_t_5); if (unlikely(__pyx_t_6 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_GIVEREF(__pyx_t_6);
  PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_6);
  __pyx_t_6 = 0;
  __pyx_t_6 = PyDict_New(); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_order, __pyx_n_s_C) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_4 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_float32); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_dtype, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_PyObject_Call(__pyx_t_7, __pyx_t_5, __pyx_t_6); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_12 = __Pyx_PyObject_to_MemoryviewSlice_dsds_float(__pyx_t_3);
  if (unlikely(!__pyx_t_12.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_v_ref_xyz_frame = __pyx_t_12;
  __pyx_t_12.memview = NULL;
  __pyx_t_12.data = NULL;

  /* "_rmsd.pyx":171
 * 
 *     # t0 = time.time()
 *     if precentered and (reference._rmsd_traces is not None) and (target._rmsd_traces is not None) and atom_indices == slice(None):             # <<<<<<<<<<<<<<
 *         target_g = np.asarray(target._rmsd_traces, order='C', dtype=np.float32)
 *         ref_g = reference._rmsd_traces[frame]
 */
  __pyx_t_2 = __Pyx_PyObject_IsTrue(((PyObject *)__pyx_v_precentered)); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 171; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  if (__pyx_t_2) {
  } else {
    __pyx_t_1 = __pyx_t_2;
    goto __pyx_L15_bool_binop_done;
  }
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_reference, __pyx_n_s_rmsd_traces); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 171; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_2 = (__pyx_t_3 != Py_None);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_13 = (__pyx_t_2 != 0);
  if (__pyx_t_13) {
  } else {
    __pyx_t_1 = __pyx_t_13;
    goto __pyx_L15_bool_binop_done;
  }
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_target, __pyx_n_s_rmsd_traces); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 171; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_13 = (__pyx_t_3 != Py_None);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_2 = (__pyx_t_13 != 0);
  if (__pyx_t_2) {
  } else {
    __pyx_t_1 = __pyx_t_2;
    goto __pyx_L15_bool_binop_done;
  }
  __pyx_t_3 = PyObject_RichCompare(__pyx_v_atom_indices, __pyx_slice__8, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 171; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 171; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_1 = __pyx_t_2;
  __pyx_L15_bool_binop_done:;
  if (__pyx_t_1) {

    /* "_rmsd.pyx":172
 *     # t0 = time.time()
 *     if precentered and (reference._rmsd_traces is not None) and (target._rmsd_traces is not None) and atom_indices == slice(None):
 *         target_g = np.asarray(target._rmsd_traces, order='C', dtype=np.float32)             # <<<<<<<<<<<<<<
 *         ref_g = reference._rmsd_traces[frame]
 *     else:
 */
    __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_asarray); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_target, __pyx_n_s_rmsd_traces); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_3);
    __pyx_t_3 = 0;
    __pyx_t_3 = PyDict_New(); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    if (PyDict_SetItem(__pyx_t_3, __pyx_n_s_order, __pyx_n_s_C) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_t_7 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_float32); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    if (PyDict_SetItem(__pyx_t_3, __pyx_n_s_dtype, __pyx_t_4) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_6, __pyx_t_5, __pyx_t_3); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_14 = __Pyx_PyObject_to_MemoryviewSlice_ds_float(__pyx_t_4);
    if (unlikely(!__pyx_t_14.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_v_target_g = __pyx_t_14;
    __pyx_t_14.memview = NULL;
    __pyx_t_14.data = NULL;

    /* "_rmsd.pyx":173
 *     if precentered and (reference._rmsd_traces is not None) and (target._rmsd_traces is not None) and atom_indices == slice(None):
 *         target_g = np.asarray(target._rmsd_traces, order='C', dtype=np.float32)
 *         ref_g = reference._rmsd_traces[frame]             # <<<<<<<<<<<<<<
 *     else:
 *         target_g = np.empty(target_n_frames, dtype=np.float32)
 */
    __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_reference, __pyx_n_s_rmsd_traces); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 173; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_3 = __Pyx_GetItemInt(__pyx_t_4, __pyx_v_frame, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 173; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_t_15 = __pyx_PyFloat_AsFloat(__pyx_t_3); if (unlikely((__pyx_t_15 == (float)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 173; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_v_ref_g = __pyx_t_15;

    /* "_rmsd.pyx":171
 * 
 *     # t0 = time.time()
 *     if precentered and (reference._rmsd_traces is not None) and (target._rmsd_traces is not None) and atom_indices == slice(None):             # <<<<<<<<<<<<<<
 *         target_g = np.asarray(target._rmsd_traces, order='C', dtype=np.float32)
 *         ref_g = reference._rmsd_traces[frame]
 */
    goto __pyx_L14;
  }

  /* "_rmsd.pyx":175
 *         ref_g = reference._rmsd_traces[frame]
 *     else:
 *         target_g = np.empty(target_n_frames, dtype=np.float32)             # <<<<<<<<<<<<<<
 *         inplace_center_and_trace_atom_major(&target_xyz[0,0,0], &target_g[0], target_n_frames, n_atoms)
 *         inplace_center_and_trace_atom_major(&ref_xyz_frame[0, 0], &ref_g, 1, n_atoms)
 */
  /*else*/ {
    __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 175; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_empty); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 175; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_target_n_frames); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 175; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 175; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_3);
    __pyx_t_3 = 0;
    __pyx_t_3 = PyDict_New(); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 175; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 175; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_float32); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 175; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (PyDict_SetItem(__pyx_t_3, __pyx_n_s_dtype, __pyx_t_7) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 175; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_4, __pyx_t_5, __pyx_t_3); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 175; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_14 = __Pyx_PyObject_to_MemoryviewSlice_ds_float(__pyx_t_7);
    if (unlikely(!__pyx_t_14.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 175; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_v_target_g = __pyx_t_14;
    __pyx_t_14.memview = NULL;
    __pyx_t_14.data = NULL;

    /* "_rmsd.pyx":176
 *     else:
 *         target_g = np.empty(target_n_frames, dtype=np.float32)
 *         inplace_center_and_trace_atom_major(&target_xyz[0,0,0], &target_g[0], target_n_frames, n_atoms)             # <<<<<<<<<<<<<<
 *         inplace_center_and_trace_atom_major(&ref_xyz_frame[0, 0], &ref_g, 1, n_atoms)
 * 
 */
    __pyx_t_16 = 0;
    __pyx_t_17 = 0;
    __pyx_t_18 = 0;
    if (__pyx_t_16 < 0) __pyx_t_16 += __pyx_v_target_xyz.shape[0];
    if (__pyx_t_17 < 0) __pyx_t_17 += __pyx_v_target_xyz.shape[1];
    if (__pyx_t_18 < 0) __pyx_t_18 += __pyx_v_target_xyz.shape[2];
    __pyx_t_19 = 0;
    if (__pyx_t_19 < 0) __pyx_t_19 += __pyx_v_target_g.shape[0];
    inplace_center_and_trace_atom_major((&(*((float *) ( /* dim=2 */ (( /* dim=1 */ (( /* dim=0 */ (__pyx_v_target_xyz.data + __pyx_t_16 * __pyx_v_target_xyz.strides[0]) ) + __pyx_t_17 * __pyx_v_target_xyz.strides[1]) ) + __pyx_t_18 * __pyx_v_target_xyz.strides[2]) )))), (&(*((float *) ( /* dim=0 */ (__pyx_v_target_g.data + __pyx_t_19 * __pyx_v_target_g.strides[0]) )))), __pyx_v_target_n_frames, __pyx_v_n_atoms);

    /* "_rmsd.pyx":177
 *         target_g = np.empty(target_n_frames, dtype=np.float32)
 *         inplace_center_and_trace_atom_major(&target_xyz[0,0,0], &target_g[0], target_n_frames, n_atoms)
 *         inplace_center_and_trace_atom_major(&ref_xyz_frame[0, 0], &ref_g, 1, n_atoms)             # <<<<<<<<<<<<<<
 * 
 *     # t1 = time.time()
 */
    __pyx_t_20 = 0;
    __pyx_t_21 = 0;
    if (__pyx_t_20 < 0) __pyx_t_20 += __pyx_v_ref_xyz_frame.shape[0];
    if (__pyx_t_21 < 0) __pyx_t_21 += __pyx_v_ref_xyz_frame.shape[1];
    inplace_center_and_trace_atom_major((&(*((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_ref_xyz_frame.data + __pyx_t_20 * __pyx_v_ref_xyz_frame.strides[0]) ) + __pyx_t_21 * __pyx_v_ref_xyz_frame.strides[1]) )))), (&__pyx_v_ref_g), 1, __pyx_v_n_atoms);
  }
  __pyx_L14:;

  /* "_rmsd.pyx":181
 *     # t1 = time.time()
 * 
 *     cdef float[:] distances = np.zeros(target_n_frames, dtype=np.float32)             # <<<<<<<<<<<<<<
 *     if parallel:
 *         for i in prange(target_n_frames, nogil=True):
 */
  __pyx_t_7 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_zeros); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_target_n_frames); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_GIVEREF(__pyx_t_7);
  PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_7);
  __pyx_t_7 = 0;
  __pyx_t_7 = PyDict_New(); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_4 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_float32); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  if (PyDict_SetItem(__pyx_t_7, __pyx_n_s_dtype, __pyx_t_6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_3, __pyx_t_5, __pyx_t_7); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_14 = __Pyx_PyObject_to_MemoryviewSlice_ds_float(__pyx_t_6);
  if (unlikely(!__pyx_t_14.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_v_distances = __pyx_t_14;
  __pyx_t_14.memview = NULL;
  __pyx_t_14.data = NULL;

  /* "_rmsd.pyx":182
 * 
 *     cdef float[:] distances = np.zeros(target_n_frames, dtype=np.float32)
 *     if parallel:             # <<<<<<<<<<<<<<
 *         for i in prange(target_n_frames, nogil=True):
 *             msd = msd_atom_major(n_atoms, n_atoms, &target_xyz[i, 0, 0], &ref_xyz_frame[0, 0], target_g[i], ref_g, 0, NULL)
 */
  __pyx_t_1 = __Pyx_PyObject_IsTrue(((PyObject *)__pyx_v_parallel)); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 182; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  if (__pyx_t_1) {

    /* "_rmsd.pyx":183
 *     cdef float[:] distances = np.zeros(target_n_frames, dtype=np.float32)
 *     if parallel:
 *         for i in prange(target_n_frames, nogil=True):             # <<<<<<<<<<<<<<
 *             msd = msd_atom_major(n_atoms, n_atoms, &target_xyz[i, 0, 0], &ref_xyz_frame[0, 0], target_g[i], ref_g, 0, NULL)
 *             distances[i] = sqrtf(msd)
 */
    {
        #ifdef WITH_THREAD
        PyThreadState *_save;
        Py_UNBLOCK_THREADS
        #endif
        /*try:*/ {
          __pyx_t_8 = __pyx_v_target_n_frames;
          if (1 == 0) abort();
          {
              #if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
                  #undef likely
                  #undef unlikely
                  #define likely(x)   (x)
                  #define unlikely(x) (x)
              #endif
              __pyx_t_22 = (__pyx_t_8 - 0) / 1;
              if (__pyx_t_22 > 0)
              {
                  #ifdef _OPENMP
                  #pragma omp parallel private(__pyx_t_28, __pyx_t_24, __pyx_t_23, __pyx_t_29, __pyx_t_26, __pyx_t_27, __pyx_t_25)
                  #endif /* _OPENMP */
                  {
                      #ifdef _OPENMP
                      #pragma omp for firstprivate(__pyx_v_i) lastprivate(__pyx_v_i) lastprivate(__pyx_v_msd)
                      #endif /* _OPENMP */
                      for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_22; __pyx_t_9++){
                          {
                              __pyx_v_i = 0 + 1 * __pyx_t_9;
                              /* Initialize private variables to invalid values */
                              __pyx_v_msd = ((float)__PYX_NAN());

                              /* "_rmsd.pyx":184
 *     if parallel:
 *         for i in prange(target_n_frames, nogil=True):
 *             msd = msd_atom_major(n_atoms, n_atoms, &target_xyz[i, 0, 0], &ref_xyz_frame[0, 0], target_g[i], ref_g, 0, NULL)             # <<<<<<<<<<<<<<
 *             distances[i] = sqrtf(msd)
 *     else:
 */
                              __pyx_t_23 = __pyx_v_i;
                              __pyx_t_24 = 0;
                              __pyx_t_25 = 0;
                              if (__pyx_t_23 < 0) __pyx_t_23 += __pyx_v_target_xyz.shape[0];
                              if (__pyx_t_24 < 0) __pyx_t_24 += __pyx_v_target_xyz.shape[1];
                              if (__pyx_t_25 < 0) __pyx_t_25 += __pyx_v_target_xyz.shape[2];
                              __pyx_t_26 = 0;
                              __pyx_t_27 = 0;
                              if (__pyx_t_26 < 0) __pyx_t_26 += __pyx_v_ref_xyz_frame.shape[0];
                              if (__pyx_t_27 < 0) __pyx_t_27 += __pyx_v_ref_xyz_frame.shape[1];
                              __pyx_t_28 = __pyx_v_i;
                              if (__pyx_t_28 < 0) __pyx_t_28 += __pyx_v_target_g.shape[0];
                              __pyx_v_msd = msd_atom_major(__pyx_v_n_atoms, __pyx_v_n_atoms, (&(*((float *) ( /* dim=2 */ (( /* dim=1 */ (( /* dim=0 */ (__pyx_v_target_xyz.data + __pyx_t_23 * __pyx_v_target_xyz.strides[0]) ) + __pyx_t_24 * __pyx_v_target_xyz.strides[1]) ) + __pyx_t_25 * __pyx_v_target_xyz.strides[2]) )))), (&(*((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_ref_xyz_frame.data + __pyx_t_26 * __pyx_v_ref_xyz_frame.strides[0]) ) + __pyx_t_27 * __pyx_v_ref_xyz_frame.strides[1]) )))), (*((float *) ( /* dim=0 */ (__pyx_v_target_g.data + __pyx_t_28 * __pyx_v_target_g.strides[0]) ))), __pyx_v_ref_g, 0, NULL);

                              /* "_rmsd.pyx":185
 *         for i in prange(target_n_frames, nogil=True):
 *             msd = msd_atom_major(n_atoms, n_atoms, &target_xyz[i, 0, 0], &ref_xyz_frame[0, 0], target_g[i], ref_g, 0, NULL)
 *             distances[i] = sqrtf(msd)             # <<<<<<<<<<<<<<
 *     else:
 *         for i in range(target_n_frames):
 */
                              __pyx_t_29 = __pyx_v_i;
                              if (__pyx_t_29 < 0) __pyx_t_29 += __pyx_v_distances.shape[0];
                              *((float *) ( /* dim=0 */ (__pyx_v_distances.data + __pyx_t_29 * __pyx_v_distances.strides[0]) )) = sqrtf(__pyx_v_msd);
                          }
                      }
                  }
              }
          }
          #if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
              #undef likely
              #undef unlikely
              #define likely(x)   __builtin_expect(!!(x), 1)
              #define unlikely(x) __builtin_expect(!!(x), 0)
          #endif
        }

        /* "_rmsd.pyx":183
 *     cdef float[:] distances = np.zeros(target_n_frames, dtype=np.float32)
 *     if parallel:
 *         for i in prange(target_n_frames, nogil=True):             # <<<<<<<<<<<<<<
 *             msd = msd_atom_major(n_atoms, n_atoms, &target_xyz[i, 0, 0], &ref_xyz_frame[0, 0], target_g[i], ref_g, 0, NULL)
 *             distances[i] = sqrtf(msd)
 */
        /*finally:*/ {
          /*normal exit:*/{
            #ifdef WITH_THREAD
            Py_BLOCK_THREADS
            #endif
            goto __pyx_L22;
          }
          __pyx_L22:;
        }
    }

    /* "_rmsd.pyx":182
 * 
 *     cdef float[:] distances = np.zeros(target_n_frames, dtype=np.float32)
 *     if parallel:             # <<<<<<<<<<<<<<
 *         for i in prange(target_n_frames, nogil=True):
 *             msd = msd_atom_major(n_atoms, n_atoms, &target_xyz[i, 0, 0], &ref_xyz_frame[0, 0], target_g[i], ref_g, 0, NULL)
 */
    goto __pyx_L19;
  }

  /* "_rmsd.pyx":187
 *             distances[i] = sqrtf(msd)
 *     else:
 *         for i in range(target_n_frames):             # <<<<<<<<<<<<<<
 *             msd = msd_atom_major(n_atoms, n_atoms, &target_xyz[i, 0, 0], &ref_xyz_frame[0, 0], target_g[i], ref_g, 0, NULL)
 *             distances[i] = sqrtf(msd)
 */
  /*else*/ {
    __pyx_t_22 = __pyx_v_target_n_frames;
    for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_22; __pyx_t_9+=1) {
      __pyx_v_i = __pyx_t_9;

      /* "_rmsd.pyx":188
 *     else:
 *         for i in range(target_n_frames):
 *             msd = msd_atom_major(n_atoms, n_atoms, &target_xyz[i, 0, 0], &ref_xyz_frame[0, 0], target_g[i], ref_g, 0, NULL)             # <<<<<<<<<<<<<<
 *             distances[i] = sqrtf(msd)
 * 
 */
      __pyx_t_30 = __pyx_v_i;
      __pyx_t_31 = 0;
      __pyx_t_32 = 0;
      if (__pyx_t_30 < 0) __pyx_t_30 += __pyx_v_target_xyz.shape[0];
      if (__pyx_t_31 < 0) __pyx_t_31 += __pyx_v_target_xyz.shape[1];
      if (__pyx_t_32 < 0) __pyx_t_32 += __pyx_v_target_xyz.shape[2];
      __pyx_t_33 = 0;
      __pyx_t_34 = 0;
      if (__pyx_t_33 < 0) __pyx_t_33 += __pyx_v_ref_xyz_frame.shape[0];
      if (__pyx_t_34 < 0) __pyx_t_34 += __pyx_v_ref_xyz_frame.shape[1];
      __pyx_t_35 = __pyx_v_i;
      if (__pyx_t_35 < 0) __pyx_t_35 += __pyx_v_target_g.shape[0];
      __pyx_v_msd = msd_atom_major(__pyx_v_n_atoms, __pyx_v_n_atoms, (&(*((float *) ( /* dim=2 */ (( /* dim=1 */ (( /* dim=0 */ (__pyx_v_target_xyz.data + __pyx_t_30 * __pyx_v_target_xyz.strides[0]) ) + __pyx_t_31 * __pyx_v_target_xyz.strides[1]) ) + __pyx_t_32 * __pyx_v_target_xyz.strides[2]) )))), (&(*((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_ref_xyz_frame.data + __pyx_t_33 * __pyx_v_ref_xyz_frame.strides[0]) ) + __pyx_t_34 * __pyx_v_ref_xyz_frame.strides[1]) )))), (*((float *) ( /* dim=0 */ (__pyx_v_target_g.data + __pyx_t_35 * __pyx_v_target_g.strides[0]) ))), __pyx_v_ref_g, 0, NULL);

      /* "_rmsd.pyx":189
 *         for i in range(target_n_frames):
 *             msd = msd_atom_major(n_atoms, n_atoms, &target_xyz[i, 0, 0], &ref_xyz_frame[0, 0], target_g[i], ref_g, 0, NULL)
 *             distances[i] = sqrtf(msd)             # <<<<<<<<<<<<<<
 * 
 *     # t2 = time.time()
 */
      __pyx_t_36 = __pyx_v_i;
      if (__pyx_t_36 < 0) __pyx_t_36 += __pyx_v_distances.shape[0];
      *((float *) ( /* dim=0 */ (__pyx_v_distances.data + __pyx_t_36 * __pyx_v_distances.strides[0]) )) = sqrtf(__pyx_v_msd);
    }
  }
  __pyx_L19:;

  /* "_rmsd.pyx":193
 *     # t2 = time.time()
 *     # print 'rmsd: %s, centering: %s' % (t2-t1, t1-t0)
 *     return np.array(distances, copy=False)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 193; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_array); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 193; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_6 = __pyx_memoryview_fromslice(__pyx_v_distances, 1, (PyObject *(*)(char *)) __pyx_memview_get_float, (int (*)(char *, PyObject *)) __pyx_memview_set_float, 0);; if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 193; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 193; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_GIVEREF(__pyx_t_6);
  PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_6);
  __pyx_t_6 = 0;
  __pyx_t_6 = PyDict_New(); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 193; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_copy, Py_False) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 193; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_3 = __Pyx_PyObject_Call(__pyx_t_7, __pyx_t_5, __pyx_t_6); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 193; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_r = __pyx_t_3;
  __pyx_t_3 = 0;
  goto __pyx_L0;

  /* "_rmsd.pyx":59
 * 
 * @cython.boundscheck(False)
 * def rmsd(target, reference, int frame=0, atom_indices=None,             # <<<<<<<<<<<<<<
 *          ref_atom_indices=None, bool parallel=True, bool precentered=False):
 *     """rmsd(target, reference, frame=0, atom_indices=None, parallel=True, precentered=False)
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __PYX_XDEC_MEMVIEW(&__pyx_t_11, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_t_12, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_t_14, 1);
  __Pyx_AddTraceback("_rmsd.rmsd", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __PYX_XDEC_MEMVIEW(&__pyx_v_target_xyz, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_ref_xyz_frame, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_target_g, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_distances, 1);
  __Pyx_XDECREF(__pyx_v_atom_indices);
  __Pyx_XDECREF(__pyx_v_ref_atom_indices);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "_rmsd.pyx":196
 * 
 * 
 * def _center_inplace_atom_major(float[:, :, ::1] xyz not None):             # <<<<<<<<<<<<<<
 *     assert xyz.shape[2] == 3
 *     cdef float[:] traces = np.empty(xyz.shape[0], dtype=np.float32)
 */

/* Python wrapper */
static PyObject *__pyx_pw_5_rmsd_3_center_inplace_atom_major(PyObject *__pyx_self, PyObject *__pyx_arg_xyz); /*proto*/
static PyMethodDef __pyx_mdef_5_rmsd_3_center_inplace_atom_major = {"_center_inplace_atom_major", (PyCFunction)__pyx_pw_5_rmsd_3_center_inplace_atom_major, METH_O, 0};
static PyObject *__pyx_pw_5_rmsd_3_center_inplace_atom_major(PyObject *__pyx_self, PyObject *__pyx_arg_xyz) {
  __Pyx_memviewslice __pyx_v_xyz = { 0, 0, { 0 }, { 0 }, { 0 } };
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("_center_inplace_atom_major (wrapper)", 0);
  assert(__pyx_arg_xyz); {
    __pyx_v_xyz = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(__pyx_arg_xyz); if (unlikely(!__pyx_v_xyz.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 196; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L3_error:;
  __Pyx_AddTraceback("_rmsd._center_inplace_atom_major", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  if (unlikely(((PyObject *)__pyx_v_xyz.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "xyz"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 196; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  __pyx_r = __pyx_pf_5_rmsd_2_center_inplace_atom_major(__pyx_self, __pyx_v_xyz);

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5_rmsd_2_center_inplace_atom_major(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_xyz) {
  __Pyx_memviewslice __pyx_v_traces = { 0, 0, { 0 }, { 0 }, { 0 } };
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  __Pyx_memviewslice __pyx_t_6 = { 0, 0, { 0 }, { 0 }, { 0 } };
  Py_ssize_t __pyx_t_7;
  Py_ssize_t __pyx_t_8;
  Py_ssize_t __pyx_t_9;
  int __pyx_t_10;
  Py_ssize_t __pyx_t_11;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("_center_inplace_atom_major", 0);

  /* "_rmsd.pyx":197
 * 
 * def _center_inplace_atom_major(float[:, :, ::1] xyz not None):
 *     assert xyz.shape[2] == 3             # <<<<<<<<<<<<<<
 *     cdef float[:] traces = np.empty(xyz.shape[0], dtype=np.float32)
 *     inplace_center_and_trace_atom_major(&xyz[0,0,0], &traces[0], xyz.shape[0], xyz.shape[1])
 */
  #ifndef CYTHON_WITHOUT_ASSERTIONS
  if (unlikely(!Py_OptimizeFlag)) {
    if (unlikely(!(((__pyx_v_xyz.shape[2]) == 3) != 0))) {
      PyErr_SetNone(PyExc_AssertionError);
      {__pyx_filename = __pyx_f[0]; __pyx_lineno = 197; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
  }
  #endif

  /* "_rmsd.pyx":198
 * def _center_inplace_atom_major(float[:, :, ::1] xyz not None):
 *     assert xyz.shape[2] == 3
 *     cdef float[:] traces = np.empty(xyz.shape[0], dtype=np.float32)             # <<<<<<<<<<<<<<
 *     inplace_center_and_trace_atom_major(&xyz[0,0,0], &traces[0], xyz.shape[0], xyz.shape[1])
 *     return np.array(traces, copy=False)
 */
  __pyx_t_1 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 198; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_empty); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 198; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = PyInt_FromSsize_t((__pyx_v_xyz.shape[0])); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 198; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 198; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_1);
  __pyx_t_1 = 0;
  __pyx_t_1 = PyDict_New(); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 198; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_4 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 198; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_float32); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 198; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  if (PyDict_SetItem(__pyx_t_1, __pyx_n_s_dtype, __pyx_t_5) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 198; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_5 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_3, __pyx_t_1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 198; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_6 = __Pyx_PyObject_to_MemoryviewSlice_ds_float(__pyx_t_5);
  if (unlikely(!__pyx_t_6.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 198; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_v_traces = __pyx_t_6;
  __pyx_t_6.memview = NULL;
  __pyx_t_6.data = NULL;

  /* "_rmsd.pyx":199
 *     assert xyz.shape[2] == 3
 *     cdef float[:] traces = np.empty(xyz.shape[0], dtype=np.float32)
 *     inplace_center_and_trace_atom_major(&xyz[0,0,0], &traces[0], xyz.shape[0], xyz.shape[1])             # <<<<<<<<<<<<<<
 *     return np.array(traces, copy=False)
 * 
 */
  __pyx_t_7 = 0;
  __pyx_t_8 = 0;
  __pyx_t_9 = 0;
  __pyx_t_10 = -1;
  if (__pyx_t_7 < 0) {
    __pyx_t_7 += __pyx_v_xyz.shape[0];
    if (unlikely(__pyx_t_7 < 0)) __pyx_t_10 = 0;
  } else if (unlikely(__pyx_t_7 >= __pyx_v_xyz.shape[0])) __pyx_t_10 = 0;
  if (__pyx_t_8 < 0) {
    __pyx_t_8 += __pyx_v_xyz.shape[1];
    if (unlikely(__pyx_t_8 < 0)) __pyx_t_10 = 1;
  } else if (unlikely(__pyx_t_8 >= __pyx_v_xyz.shape[1])) __pyx_t_10 = 1;
  if (__pyx_t_9 < 0) {
    __pyx_t_9 += __pyx_v_xyz.shape[2];
    if (unlikely(__pyx_t_9 < 0)) __pyx_t_10 = 2;
  } else if (unlikely(__pyx_t_9 >= __pyx_v_xyz.shape[2])) __pyx_t_10 = 2;
  if (unlikely(__pyx_t_10 != -1)) {
    __Pyx_RaiseBufferIndexError(__pyx_t_10);
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 199; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  __pyx_t_11 = 0;
  __pyx_t_10 = -1;
  if (__pyx_t_11 < 0) {
    __pyx_t_11 += __pyx_v_traces.shape[0];
    if (unlikely(__pyx_t_11 < 0)) __pyx_t_10 = 0;
  } else if (unlikely(__pyx_t_11 >= __pyx_v_traces.shape[0])) __pyx_t_10 = 0;
  if (unlikely(__pyx_t_10 != -1)) {
    __Pyx_RaiseBufferIndexError(__pyx_t_10);
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 199; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  inplace_center_and_trace_atom_major((&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz.data + __pyx_t_7 * __pyx_v_xyz.strides[0]) ) + __pyx_t_8 * __pyx_v_xyz.strides[1]) )) + __pyx_t_9)) )))), (&(*((float *) ( /* dim=0 */ (__pyx_v_traces.data + __pyx_t_11 * __pyx_v_traces.strides[0]) )))), (__pyx_v_xyz.shape[0]), (__pyx_v_xyz.shape[1]));

  /* "_rmsd.pyx":200
 *     cdef float[:] traces = np.empty(xyz.shape[0], dtype=np.float32)
 *     inplace_center_and_trace_atom_major(&xyz[0,0,0], &traces[0], xyz.shape[0], xyz.shape[1])
 *     return np.array(traces, copy=False)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_5 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 200; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_array); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 200; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_5 = __pyx_memoryview_fromslice(__pyx_v_traces, 1, (PyObject *(*)(char *)) __pyx_memview_get_float, (int (*)(char *, PyObject *)) __pyx_memview_set_float, 0);; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 200; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 200; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_5);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_5);
  __pyx_t_5 = 0;
  __pyx_t_5 = PyDict_New(); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 200; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  if (PyDict_SetItem(__pyx_t_5, __pyx_n_s_copy, Py_False) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 200; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_1, __pyx_t_3, __pyx_t_5); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 200; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "_rmsd.pyx":196
 * 
 * 
 * def _center_inplace_atom_major(float[:, :, ::1] xyz not None):             # <<<<<<<<<<<<<<
 *     assert xyz.shape[2] == 3
 *     cdef float[:] traces = np.empty(xyz.shape[0], dtype=np.float32)
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __PYX_XDEC_MEMVIEW(&__pyx_t_6, 1);
  __Pyx_AddTraceback("_rmsd._center_inplace_atom_major", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __PYX_XDEC_MEMVIEW(&__pyx_v_xyz, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_traces, 1);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "_rmsd.pyx":211
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleRMSDs_axis_major(float[:, :, ::1] xyz1 not None,             # <<<<<<<<<<<<<<
 *                                 float[:, :, ::1] xyz2 not None, float[::1] g1,
 *                                 float[::1] g2, int frame, bool parallel=True):
 */

/* Python wrapper */
static PyObject *__pyx_pw_5_rmsd_5getMultipleRMSDs_axis_major(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static char __pyx_doc_5_rmsd_4getMultipleRMSDs_axis_major[] = "getMultipleRMSDs_axis_major(xyz1, xyz2, g1, g, frame, parallel=True)\n\n    Calculate the RMSD of several frames to a single frame, with the\n    coordinates laid out in axis-major orders\n\n    Parameters\n    ----------\n    xyz1 : np.ndarray, shape=(n_frames, 3, n_atoms), dtype=float32\n        Coordinates of reference frame.\n    xyz2 : np.ndarray, shape=(n_frames, 3, n_atoms), dtype=float32\n        Coordinates of frames to iterate over\n    g1 : np.ndarray, shape = (n_frames), dtype=float32\n        Pre-calculated G factors (traces) for each frame in xyz1\n    g2 : np.ndarray, shape = (n_frames), dtype=float32\n        Pre-calculated G factors (traces) for each frame in xyz2\n    frame : int\n        Index of the desired reference frame in xyz1.\n    parallel : bool, default True\n        If True, use OpenMP parallelization.\n\n    Returns\n    -------\n    rmsds: np.ndarray, shape=(len(xyz2),)\n        RMSDS between xyz1[frame] and all of xyz2\n    ";
static PyMethodDef __pyx_mdef_5_rmsd_5getMultipleRMSDs_axis_major = {"getMultipleRMSDs_axis_major", (PyCFunction)__pyx_pw_5_rmsd_5getMultipleRMSDs_axis_major, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5_rmsd_4getMultipleRMSDs_axis_major};
static PyObject *__pyx_pw_5_rmsd_5getMultipleRMSDs_axis_major(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  __Pyx_memviewslice __pyx_v_xyz1 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_xyz2 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_g1 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_g2 = { 0, 0, { 0 }, { 0 }, { 0 } };
  int __pyx_v_frame;
  PyBoolObject *__pyx_v_parallel = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("getMultipleRMSDs_axis_major (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_xyz1,&__pyx_n_s_xyz2,&__pyx_n_s_g1,&__pyx_n_s_g2,&__pyx_n_s_frame,&__pyx_n_s_parallel,0};
    PyObject* values[6] = {0,0,0,0,0,0};

    /* "_rmsd.pyx":213
 * def getMultipleRMSDs_axis_major(float[:, :, ::1] xyz1 not None,
 *                                 float[:, :, ::1] xyz2 not None, float[::1] g1,
 *                                 float[::1] g2, int frame, bool parallel=True):             # <<<<<<<<<<<<<<
 *     """getMultipleRMSDs_axis_major(xyz1, xyz2, g1, g, frame, parallel=True)
 * 
 */
    values[5] = (PyObject *)((PyBoolObject *)Py_True);
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_xyz1)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        case  1:
        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_xyz2)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleRMSDs_axis_major", 0, 5, 6, 1); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 211; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  2:
        if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_g1)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleRMSDs_axis_major", 0, 5, 6, 2); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 211; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  3:
        if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_g2)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleRMSDs_axis_major", 0, 5, 6, 3); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 211; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  4:
        if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_frame)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleRMSDs_axis_major", 0, 5, 6, 4); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 211; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  5:
        if (kw_args > 0) {
          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_parallel);
          if (value) { values[5] = value; kw_args--; }
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "getMultipleRMSDs_axis_major") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 211; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
      }
    } else {
      switch (PyTuple_GET_SIZE(__pyx_args)) {
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        break;
        default: goto __pyx_L5_argtuple_error;
      }
    }
    __pyx_v_xyz1 = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(values[0]); if (unlikely(!__pyx_v_xyz1.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 211; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_xyz2 = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(values[1]); if (unlikely(!__pyx_v_xyz2.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 212; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_g1 = __Pyx_PyObject_to_MemoryviewSlice_dc_float(values[2]); if (unlikely(!__pyx_v_g1.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 212; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_g2 = __Pyx_PyObject_to_MemoryviewSlice_dc_float(values[3]); if (unlikely(!__pyx_v_g2.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 213; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_frame = __Pyx_PyInt_As_int(values[4]); if (unlikely((__pyx_v_frame == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 213; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_parallel = ((PyBoolObject *)values[5]);
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("getMultipleRMSDs_axis_major", 0, 5, 6, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 211; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
  __pyx_L3_error:;
  __Pyx_AddTraceback("_rmsd.getMultipleRMSDs_axis_major", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  if (unlikely(((PyObject *)__pyx_v_xyz1.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "xyz1"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 211; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_xyz2.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "xyz2"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 212; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_parallel), __pyx_ptype_7cpython_4bool_bool, 1, "parallel", 0))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 213; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_r = __pyx_pf_5_rmsd_4getMultipleRMSDs_axis_major(__pyx_self, __pyx_v_xyz1, __pyx_v_xyz2, __pyx_v_g1, __pyx_v_g2, __pyx_v_frame, __pyx_v_parallel);

  /* "_rmsd.pyx":211
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleRMSDs_axis_major(float[:, :, ::1] xyz1 not None,             # <<<<<<<<<<<<<<
 *                                 float[:, :, ::1] xyz2 not None, float[::1] g1,
 *                                 float[::1] g2, int frame, bool parallel=True):
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5_rmsd_4getMultipleRMSDs_axis_major(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_xyz1, __Pyx_memviewslice __pyx_v_xyz2, __Pyx_memviewslice __pyx_v_g1, __Pyx_memviewslice __pyx_v_g2, int __pyx_v_frame, PyBoolObject *__pyx_v_parallel) {
  Py_ssize_t __pyx_v_i;
  int __pyx_v_n_frames;
  int __pyx_v_n_atoms;
  float __pyx_v_msd;
  __Pyx_memviewslice __pyx_v_distances = { 0, 0, { 0 }, { 0 }, { 0 } };
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  __Pyx_memviewslice __pyx_t_8 = { 0, 0, { 0 }, { 0 }, { 0 } };
  int __pyx_t_9;
  Py_ssize_t __pyx_t_10;
  Py_ssize_t __pyx_t_11;
  Py_ssize_t __pyx_t_12;
  Py_ssize_t __pyx_t_13;
  Py_ssize_t __pyx_t_14;
  Py_ssize_t __pyx_t_15;
  Py_ssize_t __pyx_t_16;
  Py_ssize_t __pyx_t_17;
  Py_ssize_t __pyx_t_18;
  Py_ssize_t __pyx_t_19;
  Py_ssize_t __pyx_t_20;
  Py_ssize_t __pyx_t_21;
  Py_ssize_t __pyx_t_22;
  Py_ssize_t __pyx_t_23;
  Py_ssize_t __pyx_t_24;
  Py_ssize_t __pyx_t_25;
  Py_ssize_t __pyx_t_26;
  Py_ssize_t __pyx_t_27;
  Py_ssize_t __pyx_t_28;
  Py_ssize_t __pyx_t_29;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("getMultipleRMSDs_axis_major", 0);

  /* "_rmsd.pyx":241
 * 
 *     cdef Py_ssize_t i
 *     cdef int n_frames = xyz2.shape[0]             # <<<<<<<<<<<<<<
 *     cdef int n_atoms = xyz1.shape[2]
 *     cdef float msd
 */
  __pyx_v_n_frames = (__pyx_v_xyz2.shape[0]);

  /* "_rmsd.pyx":242
 *     cdef Py_ssize_t i
 *     cdef int n_frames = xyz2.shape[0]
 *     cdef int n_atoms = xyz1.shape[2]             # <<<<<<<<<<<<<<
 *     cdef float msd
 * 
 */
  __pyx_v_n_atoms = (__pyx_v_xyz1.shape[2]);

  /* "_rmsd.pyx":245
 *     cdef float msd
 * 
 *     assert xyz1.ndim == 3 and xyz2.ndim == 3 and xyz1.shape[1] == 3 and xyz2.shape[1] == 3             # <<<<<<<<<<<<<<
 *     if not (xyz1.shape[2]  == xyz2.shape[2]):
 *         raise ValueError("Input arrays must have same number of atoms. "
 */
  #ifndef CYTHON_WITHOUT_ASSERTIONS
  if (unlikely(!Py_OptimizeFlag)) {
    __pyx_t_2 = __pyx_memoryview_fromslice(__pyx_v_xyz1, 3, (PyObject *(*)(char *)) __pyx_memview_get_float, (int (*)(char *, PyObject *)) __pyx_memview_set_float, 0);; if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 245; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_ndim); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 245; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_2 = __Pyx_PyInt_EqObjC(__pyx_t_3, __pyx_int_3, 3, 0); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 245; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 245; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    if (__pyx_t_4) {
    } else {
      __pyx_t_1 = __pyx_t_4;
      goto __pyx_L3_bool_binop_done;
    }
    __pyx_t_2 = __pyx_memoryview_fromslice(__pyx_v_xyz2, 3, (PyObject *(*)(char *)) __pyx_memview_get_float, (int (*)(char *, PyObject *)) __pyx_memview_set_float, 0);; if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 245; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_ndim); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 245; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_2 = __Pyx_PyInt_EqObjC(__pyx_t_3, __pyx_int_3, 3, 0); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 245; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 245; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    if (__pyx_t_4) {
    } else {
      __pyx_t_1 = __pyx_t_4;
      goto __pyx_L3_bool_binop_done;
    }
    __pyx_t_4 = (((__pyx_v_xyz1.shape[1]) == 3) != 0);
    if (__pyx_t_4) {
    } else {
      __pyx_t_1 = __pyx_t_4;
      goto __pyx_L3_bool_binop_done;
    }
    __pyx_t_4 = (((__pyx_v_xyz2.shape[1]) == 3) != 0);
    __pyx_t_1 = __pyx_t_4;
    __pyx_L3_bool_binop_done:;
    if (unlikely(!__pyx_t_1)) {
      PyErr_SetNone(PyExc_AssertionError);
      {__pyx_filename = __pyx_f[0]; __pyx_lineno = 245; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
  }
  #endif

  /* "_rmsd.pyx":246
 * 
 *     assert xyz1.ndim == 3 and xyz2.ndim == 3 and xyz1.shape[1] == 3 and xyz2.shape[1] == 3
 *     if not (xyz1.shape[2]  == xyz2.shape[2]):             # <<<<<<<<<<<<<<
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (xyz1.shape[2], xyz2.shape[2]))
 */
  __pyx_t_1 = ((!(((__pyx_v_xyz1.shape[2]) == (__pyx_v_xyz2.shape[2])) != 0)) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":248
 *     if not (xyz1.shape[2]  == xyz2.shape[2]):
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (xyz1.shape[2], xyz2.shape[2]))             # <<<<<<<<<<<<<<
 *     if frame >= xyz1.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 */
    __pyx_t_2 = PyInt_FromSsize_t((__pyx_v_xyz1.shape[2])); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 248; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = PyInt_FromSsize_t((__pyx_v_xyz2.shape[2])); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 248; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_5 = PyTuple_New(2); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 248; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_2);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_2);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_3);
    __pyx_t_2 = 0;
    __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyString_Format(__pyx_kp_s_Input_arrays_must_have_same_numb, __pyx_t_5); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 248; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;

    /* "_rmsd.pyx":247
 *     assert xyz1.ndim == 3 and xyz2.ndim == 3 and xyz1.shape[1] == 3 and xyz2.shape[1] == 3
 *     if not (xyz1.shape[2]  == xyz2.shape[2]):
 *         raise ValueError("Input arrays must have same number of atoms. "             # <<<<<<<<<<<<<<
 *                          "found %d and %d." % (xyz1.shape[2], xyz2.shape[2]))
 *     if frame >= xyz1.shape[0]:
 */
    __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 247; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_3);
    __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_5, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 247; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 247; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":246
 * 
 *     assert xyz1.ndim == 3 and xyz2.ndim == 3 and xyz1.shape[1] == 3 and xyz2.shape[1] == 3
 *     if not (xyz1.shape[2]  == xyz2.shape[2]):             # <<<<<<<<<<<<<<
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (xyz1.shape[2], xyz2.shape[2]))
 */
  }

  /* "_rmsd.pyx":249
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (xyz1.shape[2], xyz2.shape[2]))
 *     if frame >= xyz1.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 *                          "only %d frames." % (frame, xyz1.shape[0]))
 */
  __pyx_t_1 = ((__pyx_v_frame >= (__pyx_v_xyz1.shape[0])) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":251
 *     if frame >= xyz1.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 *                          "only %d frames." % (frame, xyz1.shape[0]))             # <<<<<<<<<<<<<<
 * 
 *     cdef float[:] distances = np.zeros(n_frames, dtype=np.float32)
 */
    __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_frame); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 251; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_5 = PyInt_FromSsize_t((__pyx_v_xyz1.shape[0])); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 251; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_2 = PyTuple_New(2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 251; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_3);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_5);
    __pyx_t_3 = 0;
    __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_PyString_Format(__pyx_kp_s_Cannot_calculate_RMSD_of_frame_d_2, __pyx_t_2); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 251; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

    /* "_rmsd.pyx":250
 *                          "found %d and %d." % (xyz1.shape[2], xyz2.shape[2]))
 *     if frame >= xyz1.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "             # <<<<<<<<<<<<<<
 *                          "only %d frames." % (frame, xyz1.shape[0]))
 * 
 */
    __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 250; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_5);
    __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_2, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 250; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_Raise(__pyx_t_5, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 250; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":249
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (xyz1.shape[2], xyz2.shape[2]))
 *     if frame >= xyz1.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 *                          "only %d frames." % (frame, xyz1.shape[0]))
 */
  }

  /* "_rmsd.pyx":253
 *                          "only %d frames." % (frame, xyz1.shape[0]))
 * 
 *     cdef float[:] distances = np.zeros(n_frames, dtype=np.float32)             # <<<<<<<<<<<<<<
 * 
 *     if parallel == True:
 */
  __pyx_t_5 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 253; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_zeros); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 253; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_n_frames); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 253; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 253; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_5);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_5);
  __pyx_t_5 = 0;
  __pyx_t_5 = PyDict_New(); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 253; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 253; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_float32); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 253; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  if (PyDict_SetItem(__pyx_t_5, __pyx_n_s_dtype, __pyx_t_7) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 253; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_3, __pyx_t_5); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 253; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_8 = __Pyx_PyObject_to_MemoryviewSlice_ds_float(__pyx_t_7);
  if (unlikely(!__pyx_t_8.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 253; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_v_distances = __pyx_t_8;
  __pyx_t_8.memview = NULL;
  __pyx_t_8.data = NULL;

  /* "_rmsd.pyx":255
 *     cdef float[:] distances = np.zeros(n_frames, dtype=np.float32)
 * 
 *     if parallel == True:             # <<<<<<<<<<<<<<
 *         for i in prange(n_frames, nogil=True):
 *             msd = msd_axis_major(n_atoms, n_atoms, n_atoms,
 */
  __pyx_t_7 = PyObject_RichCompare(((PyObject *)__pyx_v_parallel), Py_True, Py_EQ); __Pyx_XGOTREF(__pyx_t_7); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 255; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 255; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  if (__pyx_t_1) {

    /* "_rmsd.pyx":256
 * 
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):             # <<<<<<<<<<<<<<
 *             msd = msd_axis_major(n_atoms, n_atoms, n_atoms,
 *                                    &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i])
 */
    {
        #ifdef WITH_THREAD
        PyThreadState *_save;
        Py_UNBLOCK_THREADS
        #endif
        /*try:*/ {
          __pyx_t_9 = __pyx_v_n_frames;
          if (1 == 0) abort();
          {
              #if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
                  #undef likely
                  #undef unlikely
                  #define likely(x)   (x)
                  #define unlikely(x) (x)
              #endif
              __pyx_t_11 = (__pyx_t_9 - 0) / 1;
              if (__pyx_t_11 > 0)
              {
                  #ifdef _OPENMP
                  #pragma omp parallel private(__pyx_t_17, __pyx_t_16, __pyx_t_13, __pyx_t_20, __pyx_t_15, __pyx_t_12, __pyx_t_18, __pyx_t_19, __pyx_t_14)
                  #endif /* _OPENMP */
                  {
                      #ifdef _OPENMP
                      #pragma omp for firstprivate(__pyx_v_i) lastprivate(__pyx_v_i) lastprivate(__pyx_v_msd)
                      #endif /* _OPENMP */
                      for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_11; __pyx_t_10++){
                          {
                              __pyx_v_i = 0 + 1 * __pyx_t_10;
                              /* Initialize private variables to invalid values */
                              __pyx_v_msd = ((float)__PYX_NAN());

                              /* "_rmsd.pyx":258
 *         for i in prange(n_frames, nogil=True):
 *             msd = msd_axis_major(n_atoms, n_atoms, n_atoms,
 *                                    &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i])             # <<<<<<<<<<<<<<
 *             distances[i] = sqrtf(msd)
 *     else:
 */
                              __pyx_t_12 = __pyx_v_frame;
                              __pyx_t_13 = 0;
                              __pyx_t_14 = 0;
                              __pyx_t_15 = __pyx_v_i;
                              __pyx_t_16 = 0;
                              __pyx_t_17 = 0;
                              __pyx_t_18 = __pyx_v_frame;
                              __pyx_t_19 = __pyx_v_i;

                              /* "_rmsd.pyx":257
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):
 *             msd = msd_axis_major(n_atoms, n_atoms, n_atoms,             # <<<<<<<<<<<<<<
 *                                    &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i])
 *             distances[i] = sqrtf(msd)
 */
                              __pyx_v_msd = msd_axis_major(__pyx_v_n_atoms, __pyx_v_n_atoms, __pyx_v_n_atoms, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz1.data + __pyx_t_12 * __pyx_v_xyz1.strides[0]) ) + __pyx_t_13 * __pyx_v_xyz1.strides[1]) )) + __pyx_t_14)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz2.data + __pyx_t_15 * __pyx_v_xyz2.strides[0]) ) + __pyx_t_16 * __pyx_v_xyz2.strides[1]) )) + __pyx_t_17)) )))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g1.data) + __pyx_t_18)) ))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g2.data) + __pyx_t_19)) ))));

                              /* "_rmsd.pyx":259
 *             msd = msd_axis_major(n_atoms, n_atoms, n_atoms,
 *                                    &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i])
 *             distances[i] = sqrtf(msd)             # <<<<<<<<<<<<<<
 *     else:
 *         for i in range(n_frames):
 */
                              __pyx_t_20 = __pyx_v_i;
                              *((float *) ( /* dim=0 */ (__pyx_v_distances.data + __pyx_t_20 * __pyx_v_distances.strides[0]) )) = sqrtf(__pyx_v_msd);
                          }
                      }
                  }
              }
          }
          #if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
              #undef likely
              #undef unlikely
              #define likely(x)   __builtin_expect(!!(x), 1)
              #define unlikely(x) __builtin_expect(!!(x), 0)
          #endif
        }

        /* "_rmsd.pyx":256
 * 
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):             # <<<<<<<<<<<<<<
 *             msd = msd_axis_major(n_atoms, n_atoms, n_atoms,
 *                                    &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i])
 */
        /*finally:*/ {
          /*normal exit:*/{
            #ifdef WITH_THREAD
            Py_BLOCK_THREADS
            #endif
            goto __pyx_L12;
          }
          __pyx_L12:;
        }
    }

    /* "_rmsd.pyx":255
 *     cdef float[:] distances = np.zeros(n_frames, dtype=np.float32)
 * 
 *     if parallel == True:             # <<<<<<<<<<<<<<
 *         for i in prange(n_frames, nogil=True):
 *             msd = msd_axis_major(n_atoms, n_atoms, n_atoms,
 */
    goto __pyx_L9;
  }

  /* "_rmsd.pyx":261
 *             distances[i] = sqrtf(msd)
 *     else:
 *         for i in range(n_frames):             # <<<<<<<<<<<<<<
 *             msd = msd_axis_major(n_atoms, n_atoms, n_atoms,
 *                                    &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i])
 */
  /*else*/ {
    __pyx_t_9 = __pyx_v_n_frames;
    for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_9; __pyx_t_11+=1) {
      __pyx_v_i = __pyx_t_11;

      /* "_rmsd.pyx":263
 *         for i in range(n_frames):
 *             msd = msd_axis_major(n_atoms, n_atoms, n_atoms,
 *                                    &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i])             # <<<<<<<<<<<<<<
 *             distances[i] = sqrtf(msd)
 * 
 */
      __pyx_t_21 = __pyx_v_frame;
      __pyx_t_22 = 0;
      __pyx_t_23 = 0;
      __pyx_t_24 = __pyx_v_i;
      __pyx_t_25 = 0;
      __pyx_t_26 = 0;
      __pyx_t_27 = __pyx_v_frame;
      __pyx_t_28 = __pyx_v_i;

      /* "_rmsd.pyx":262
 *     else:
 *         for i in range(n_frames):
 *             msd = msd_axis_major(n_atoms, n_atoms, n_atoms,             # <<<<<<<<<<<<<<
 *                                    &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i])
 *             distances[i] = sqrtf(msd)
 */
      __pyx_v_msd = msd_axis_major(__pyx_v_n_atoms, __pyx_v_n_atoms, __pyx_v_n_atoms, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz1.data + __pyx_t_21 * __pyx_v_xyz1.strides[0]) ) + __pyx_t_22 * __pyx_v_xyz1.strides[1]) )) + __pyx_t_23)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz2.data + __pyx_t_24 * __pyx_v_xyz2.strides[0]) ) + __pyx_t_25 * __pyx_v_xyz2.strides[1]) )) + __pyx_t_26)) )))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g1.data) + __pyx_t_27)) ))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g2.data) + __pyx_t_28)) ))));

      /* "_rmsd.pyx":264
 *             msd = msd_axis_major(n_atoms, n_atoms, n_atoms,
 *                                    &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i])
 *             distances[i] = sqrtf(msd)             # <<<<<<<<<<<<<<
 * 
 *     return np.array(distances, copy=False)
 */
      __pyx_t_29 = __pyx_v_i;
      *((float *) ( /* dim=0 */ (__pyx_v_distances.data + __pyx_t_29 * __pyx_v_distances.strides[0]) )) = sqrtf(__pyx_v_msd);
    }
  }
  __pyx_L9:;

  /* "_rmsd.pyx":266
 *             distances[i] = sqrtf(msd)
 * 
 *     return np.array(distances, copy=False)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_7 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 266; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_array); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 266; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_7 = __pyx_memoryview_fromslice(__pyx_v_distances, 1, (PyObject *(*)(char *)) __pyx_memview_get_float, (int (*)(char *, PyObject *)) __pyx_memview_set_float, 0);; if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 266; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 266; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_7);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_7);
  __pyx_t_7 = 0;
  __pyx_t_7 = PyDict_New(); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 266; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  if (PyDict_SetItem(__pyx_t_7, __pyx_n_s_copy, Py_False) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 266; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_3, __pyx_t_7); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 266; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "_rmsd.pyx":211
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleRMSDs_axis_major(float[:, :, ::1] xyz1 not None,             # <<<<<<<<<<<<<<
 *                                 float[:, :, ::1] xyz2 not None, float[::1] g1,
 *                                 float[::1] g2, int frame, bool parallel=True):
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __PYX_XDEC_MEMVIEW(&__pyx_t_8, 1);
  __Pyx_AddTraceback("_rmsd.getMultipleRMSDs_axis_major", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __PYX_XDEC_MEMVIEW(&__pyx_v_distances, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_xyz1, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_xyz2, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_g1, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_g2, 1);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "_rmsd.pyx":271
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleRMSDs_atom_major(float[:, :, ::1] xyz1 not None, float[:, :, ::1] xyz2 not None,             # <<<<<<<<<<<<<<
 *                                 float[::1] g1 not None, float[::1] g2 not None, int frame,
 *                                 bool parallel=True):
 */

/* Python wrapper */
static PyObject *__pyx_pw_5_rmsd_7getMultipleRMSDs_atom_major(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static char __pyx_doc_5_rmsd_6getMultipleRMSDs_atom_major[] = "getMultipleRMSDs_atom_major(xyz1, xyz2, g1, g2, n_atoms, frame, parallel=True)\n\n    Calculate the RMSD of several frames to a single frame, with the\n    coordinates laid out in atom-major orders\n\n    Parameters\n    ----------\n    xyz1 : np.ndarray, shape=(n_frames, n_atoms, 3), dtype=float32\n        Coordinates of reference frame.\n    xyz2 : np.ndarray, shape=(n_frames, n_atoms, 3), dtype=float32\n        Coordinates of frames to iterate over\n    g1 : np.ndarray, shape = (n_frames), dtype=float32\n        Pre-calculated G factors (traces) for each frame in xyz1\n    g2 : np.ndarray, shape = (n_frames), dtype=float32\n        Pre-calculated G factors (traces) for each frame in xyz2\n    frame : int\n        Index of the desired reference frame in xyz1.\n    parallel : bool, default True\n        If True, use OpenMP parallelization.\n\n    Returns\n    -------\n    rmsds: np.ndarray, shape=(len(xyz2),)\n        RMSDS between xyz1[frame] and all of xyz2\n    ";
static PyMethodDef __pyx_mdef_5_rmsd_7getMultipleRMSDs_atom_major = {"getMultipleRMSDs_atom_major", (PyCFunction)__pyx_pw_5_rmsd_7getMultipleRMSDs_atom_major, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5_rmsd_6getMultipleRMSDs_atom_major};
static PyObject *__pyx_pw_5_rmsd_7getMultipleRMSDs_atom_major(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  __Pyx_memviewslice __pyx_v_xyz1 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_xyz2 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_g1 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_g2 = { 0, 0, { 0 }, { 0 }, { 0 } };
  int __pyx_v_frame;
  PyBoolObject *__pyx_v_parallel = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("getMultipleRMSDs_atom_major (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_xyz1,&__pyx_n_s_xyz2,&__pyx_n_s_g1,&__pyx_n_s_g2,&__pyx_n_s_frame,&__pyx_n_s_parallel,0};
    PyObject* values[6] = {0,0,0,0,0,0};

    /* "_rmsd.pyx":273
 * def getMultipleRMSDs_atom_major(float[:, :, ::1] xyz1 not None, float[:, :, ::1] xyz2 not None,
 *                                 float[::1] g1 not None, float[::1] g2 not None, int frame,
 *                                 bool parallel=True):             # <<<<<<<<<<<<<<
 *     """getMultipleRMSDs_atom_major(xyz1, xyz2, g1, g2, n_atoms, frame, parallel=True)
 * 
 */
    values[5] = (PyObject *)((PyBoolObject *)Py_True);
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_xyz1)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        case  1:
        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_xyz2)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleRMSDs_atom_major", 0, 5, 6, 1); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  2:
        if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_g1)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleRMSDs_atom_major", 0, 5, 6, 2); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  3:
        if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_g2)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleRMSDs_atom_major", 0, 5, 6, 3); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  4:
        if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_frame)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleRMSDs_atom_major", 0, 5, 6, 4); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  5:
        if (kw_args > 0) {
          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_parallel);
          if (value) { values[5] = value; kw_args--; }
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "getMultipleRMSDs_atom_major") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
      }
    } else {
      switch (PyTuple_GET_SIZE(__pyx_args)) {
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        break;
        default: goto __pyx_L5_argtuple_error;
      }
    }
    __pyx_v_xyz1 = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(values[0]); if (unlikely(!__pyx_v_xyz1.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_xyz2 = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(values[1]); if (unlikely(!__pyx_v_xyz2.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_g1 = __Pyx_PyObject_to_MemoryviewSlice_dc_float(values[2]); if (unlikely(!__pyx_v_g1.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 272; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_g2 = __Pyx_PyObject_to_MemoryviewSlice_dc_float(values[3]); if (unlikely(!__pyx_v_g2.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 272; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_frame = __Pyx_PyInt_As_int(values[4]); if (unlikely((__pyx_v_frame == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 272; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_parallel = ((PyBoolObject *)values[5]);
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("getMultipleRMSDs_atom_major", 0, 5, 6, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
  __pyx_L3_error:;
  __Pyx_AddTraceback("_rmsd.getMultipleRMSDs_atom_major", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  if (unlikely(((PyObject *)__pyx_v_xyz1.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "xyz1"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_xyz2.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "xyz2"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_g1.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "g1"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 272; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_g2.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "g2"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 272; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_parallel), __pyx_ptype_7cpython_4bool_bool, 1, "parallel", 0))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 273; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_r = __pyx_pf_5_rmsd_6getMultipleRMSDs_atom_major(__pyx_self, __pyx_v_xyz1, __pyx_v_xyz2, __pyx_v_g1, __pyx_v_g2, __pyx_v_frame, __pyx_v_parallel);

  /* "_rmsd.pyx":271
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleRMSDs_atom_major(float[:, :, ::1] xyz1 not None, float[:, :, ::1] xyz2 not None,             # <<<<<<<<<<<<<<
 *                                 float[::1] g1 not None, float[::1] g2 not None, int frame,
 *                                 bool parallel=True):
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5_rmsd_6getMultipleRMSDs_atom_major(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_xyz1, __Pyx_memviewslice __pyx_v_xyz2, __Pyx_memviewslice __pyx_v_g1, __Pyx_memviewslice __pyx_v_g2, int __pyx_v_frame, PyBoolObject *__pyx_v_parallel) {
  Py_ssize_t __pyx_v_i;
  int __pyx_v_n_frames;
  int __pyx_v_n_atoms;
  float __pyx_v_msd;
  __Pyx_memviewslice __pyx_v_distances = { 0, 0, { 0 }, { 0 }, { 0 } };
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  __Pyx_memviewslice __pyx_t_8 = { 0, 0, { 0 }, { 0 }, { 0 } };
  int __pyx_t_9;
  Py_ssize_t __pyx_t_10;
  Py_ssize_t __pyx_t_11;
  Py_ssize_t __pyx_t_12;
  Py_ssize_t __pyx_t_13;
  Py_ssize_t __pyx_t_14;
  Py_ssize_t __pyx_t_15;
  Py_ssize_t __pyx_t_16;
  Py_ssize_t __pyx_t_17;
  Py_ssize_t __pyx_t_18;
  Py_ssize_t __pyx_t_19;
  Py_ssize_t __pyx_t_20;
  Py_ssize_t __pyx_t_21;
  Py_ssize_t __pyx_t_22;
  Py_ssize_t __pyx_t_23;
  Py_ssize_t __pyx_t_24;
  Py_ssize_t __pyx_t_25;
  Py_ssize_t __pyx_t_26;
  Py_ssize_t __pyx_t_27;
  Py_ssize_t __pyx_t_28;
  Py_ssize_t __pyx_t_29;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("getMultipleRMSDs_atom_major", 0);

  /* "_rmsd.pyx":301
 * 
 *     cdef Py_ssize_t i
 *     cdef int n_frames = xyz2.shape[0]             # <<<<<<<<<<<<<<
 *     cdef int n_atoms = xyz1.shape[1]
 *     cdef float msd
 */
  __pyx_v_n_frames = (__pyx_v_xyz2.shape[0]);

  /* "_rmsd.pyx":302
 *     cdef Py_ssize_t i
 *     cdef int n_frames = xyz2.shape[0]
 *     cdef int n_atoms = xyz1.shape[1]             # <<<<<<<<<<<<<<
 *     cdef float msd
 * 
 */
  __pyx_v_n_atoms = (__pyx_v_xyz1.shape[1]);

  /* "_rmsd.pyx":305
 *     cdef float msd
 * 
 *     assert xyz1.ndim == 3 and xyz2.ndim == 3 and xyz1.shape[2] == 3 and xyz2.shape[2] == 3             # <<<<<<<<<<<<<<
 *     if not (xyz1.shape[1]  == xyz2.shape[1]):
 *         raise ValueError("Input arrays must have same number of atoms. "
 */
  #ifndef CYTHON_WITHOUT_ASSERTIONS
  if (unlikely(!Py_OptimizeFlag)) {
    __pyx_t_2 = __pyx_memoryview_fromslice(__pyx_v_xyz1, 3, (PyObject *(*)(char *)) __pyx_memview_get_float, (int (*)(char *, PyObject *)) __pyx_memview_set_float, 0);; if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 305; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_ndim); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 305; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_2 = __Pyx_PyInt_EqObjC(__pyx_t_3, __pyx_int_3, 3, 0); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 305; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 305; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    if (__pyx_t_4) {
    } else {
      __pyx_t_1 = __pyx_t_4;
      goto __pyx_L3_bool_binop_done;
    }
    __pyx_t_2 = __pyx_memoryview_fromslice(__pyx_v_xyz2, 3, (PyObject *(*)(char *)) __pyx_memview_get_float, (int (*)(char *, PyObject *)) __pyx_memview_set_float, 0);; if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 305; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_ndim); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 305; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_2 = __Pyx_PyInt_EqObjC(__pyx_t_3, __pyx_int_3, 3, 0); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 305; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 305; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    if (__pyx_t_4) {
    } else {
      __pyx_t_1 = __pyx_t_4;
      goto __pyx_L3_bool_binop_done;
    }
    __pyx_t_4 = (((__pyx_v_xyz1.shape[2]) == 3) != 0);
    if (__pyx_t_4) {
    } else {
      __pyx_t_1 = __pyx_t_4;
      goto __pyx_L3_bool_binop_done;
    }
    __pyx_t_4 = (((__pyx_v_xyz2.shape[2]) == 3) != 0);
    __pyx_t_1 = __pyx_t_4;
    __pyx_L3_bool_binop_done:;
    if (unlikely(!__pyx_t_1)) {
      PyErr_SetNone(PyExc_AssertionError);
      {__pyx_filename = __pyx_f[0]; __pyx_lineno = 305; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
  }
  #endif

  /* "_rmsd.pyx":306
 * 
 *     assert xyz1.ndim == 3 and xyz2.ndim == 3 and xyz1.shape[2] == 3 and xyz2.shape[2] == 3
 *     if not (xyz1.shape[1]  == xyz2.shape[1]):             # <<<<<<<<<<<<<<
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (xyz1.shape[1], xyz2.shape[1]))
 */
  __pyx_t_1 = ((!(((__pyx_v_xyz1.shape[1]) == (__pyx_v_xyz2.shape[1])) != 0)) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":308
 *     if not (xyz1.shape[1]  == xyz2.shape[1]):
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (xyz1.shape[1], xyz2.shape[1]))             # <<<<<<<<<<<<<<
 *     if frame >= xyz1.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 */
    __pyx_t_2 = PyInt_FromSsize_t((__pyx_v_xyz1.shape[1])); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 308; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = PyInt_FromSsize_t((__pyx_v_xyz2.shape[1])); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 308; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_5 = PyTuple_New(2); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 308; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_2);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_2);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_3);
    __pyx_t_2 = 0;
    __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyString_Format(__pyx_kp_s_Input_arrays_must_have_same_numb, __pyx_t_5); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 308; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;

    /* "_rmsd.pyx":307
 *     assert xyz1.ndim == 3 and xyz2.ndim == 3 and xyz1.shape[2] == 3 and xyz2.shape[2] == 3
 *     if not (xyz1.shape[1]  == xyz2.shape[1]):
 *         raise ValueError("Input arrays must have same number of atoms. "             # <<<<<<<<<<<<<<
 *                          "found %d and %d." % (xyz1.shape[1], xyz2.shape[1]))
 *     if frame >= xyz1.shape[0]:
 */
    __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 307; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_3);
    __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_5, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 307; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 307; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":306
 * 
 *     assert xyz1.ndim == 3 and xyz2.ndim == 3 and xyz1.shape[2] == 3 and xyz2.shape[2] == 3
 *     if not (xyz1.shape[1]  == xyz2.shape[1]):             # <<<<<<<<<<<<<<
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (xyz1.shape[1], xyz2.shape[1]))
 */
  }

  /* "_rmsd.pyx":309
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (xyz1.shape[1], xyz2.shape[1]))
 *     if frame >= xyz1.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 *                          "only %d frames." % (frame, xyz1.shape[0]))
 */
  __pyx_t_1 = ((__pyx_v_frame >= (__pyx_v_xyz1.shape[0])) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":311
 *     if frame >= xyz1.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 *                          "only %d frames." % (frame, xyz1.shape[0]))             # <<<<<<<<<<<<<<
 * 
 *     cdef float[:] distances = np.zeros(n_frames, dtype=np.float32)
 */
    __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_frame); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 311; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_5 = PyInt_FromSsize_t((__pyx_v_xyz1.shape[0])); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 311; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_2 = PyTuple_New(2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 311; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_3);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_5);
    __pyx_t_3 = 0;
    __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_PyString_Format(__pyx_kp_s_Cannot_calculate_RMSD_of_frame_d_2, __pyx_t_2); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 311; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

    /* "_rmsd.pyx":310
 *                          "found %d and %d." % (xyz1.shape[1], xyz2.shape[1]))
 *     if frame >= xyz1.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "             # <<<<<<<<<<<<<<
 *                          "only %d frames." % (frame, xyz1.shape[0]))
 * 
 */
    __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 310; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_5);
    __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_2, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 310; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_Raise(__pyx_t_5, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 310; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":309
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (xyz1.shape[1], xyz2.shape[1]))
 *     if frame >= xyz1.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 *                          "only %d frames." % (frame, xyz1.shape[0]))
 */
  }

  /* "_rmsd.pyx":313
 *                          "only %d frames." % (frame, xyz1.shape[0]))
 * 
 *     cdef float[:] distances = np.zeros(n_frames, dtype=np.float32)             # <<<<<<<<<<<<<<
 * 
 *     if parallel == True:
 */
  __pyx_t_5 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 313; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_zeros); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 313; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_n_frames); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 313; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 313; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_5);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_5);
  __pyx_t_5 = 0;
  __pyx_t_5 = PyDict_New(); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 313; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 313; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_float32); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 313; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  if (PyDict_SetItem(__pyx_t_5, __pyx_n_s_dtype, __pyx_t_7) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 313; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_3, __pyx_t_5); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 313; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_8 = __Pyx_PyObject_to_MemoryviewSlice_ds_float(__pyx_t_7);
  if (unlikely(!__pyx_t_8.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 313; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_v_distances = __pyx_t_8;
  __pyx_t_8.memview = NULL;
  __pyx_t_8.data = NULL;

  /* "_rmsd.pyx":315
 *     cdef float[:] distances = np.zeros(n_frames, dtype=np.float32)
 * 
 *     if parallel == True:             # <<<<<<<<<<<<<<
 *         for i in prange(n_frames, nogil=True):
 *             msd = msd_atom_major(n_atoms, n_atoms,  &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i], 0, NULL)
 */
  __pyx_t_7 = PyObject_RichCompare(((PyObject *)__pyx_v_parallel), Py_True, Py_EQ); __Pyx_XGOTREF(__pyx_t_7); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 315; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 315; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  if (__pyx_t_1) {

    /* "_rmsd.pyx":316
 * 
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):             # <<<<<<<<<<<<<<
 *             msd = msd_atom_major(n_atoms, n_atoms,  &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i], 0, NULL)
 *             distances[i] = sqrtf(msd)
 */
    {
        #ifdef WITH_THREAD
        PyThreadState *_save;
        Py_UNBLOCK_THREADS
        #endif
        /*try:*/ {
          __pyx_t_9 = __pyx_v_n_frames;
          if (1 == 0) abort();
          {
              #if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
                  #undef likely
                  #undef unlikely
                  #define likely(x)   (x)
                  #define unlikely(x) (x)
              #endif
              __pyx_t_11 = (__pyx_t_9 - 0) / 1;
              if (__pyx_t_11 > 0)
              {
                  #ifdef _OPENMP
                  #pragma omp parallel private(__pyx_t_17, __pyx_t_16, __pyx_t_13, __pyx_t_20, __pyx_t_15, __pyx_t_12, __pyx_t_18, __pyx_t_19, __pyx_t_14)
                  #endif /* _OPENMP */
                  {
                      #ifdef _OPENMP
                      #pragma omp for lastprivate(__pyx_v_msd) firstprivate(__pyx_v_i) lastprivate(__pyx_v_i)
                      #endif /* _OPENMP */
                      for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_11; __pyx_t_10++){
                          {
                              __pyx_v_i = 0 + 1 * __pyx_t_10;
                              /* Initialize private variables to invalid values */
                              __pyx_v_msd = ((float)__PYX_NAN());

                              /* "_rmsd.pyx":317
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):
 *             msd = msd_atom_major(n_atoms, n_atoms,  &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i], 0, NULL)             # <<<<<<<<<<<<<<
 *             distances[i] = sqrtf(msd)
 *     else:
 */
                              __pyx_t_12 = __pyx_v_frame;
                              __pyx_t_13 = 0;
                              __pyx_t_14 = 0;
                              __pyx_t_15 = __pyx_v_i;
                              __pyx_t_16 = 0;
                              __pyx_t_17 = 0;
                              __pyx_t_18 = __pyx_v_frame;
                              __pyx_t_19 = __pyx_v_i;
                              __pyx_v_msd = msd_atom_major(__pyx_v_n_atoms, __pyx_v_n_atoms, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz1.data + __pyx_t_12 * __pyx_v_xyz1.strides[0]) ) + __pyx_t_13 * __pyx_v_xyz1.strides[1]) )) + __pyx_t_14)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz2.data + __pyx_t_15 * __pyx_v_xyz2.strides[0]) ) + __pyx_t_16 * __pyx_v_xyz2.strides[1]) )) + __pyx_t_17)) )))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g1.data) + __pyx_t_18)) ))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g2.data) + __pyx_t_19)) ))), 0, NULL);

                              /* "_rmsd.pyx":318
 *         for i in prange(n_frames, nogil=True):
 *             msd = msd_atom_major(n_atoms, n_atoms,  &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i], 0, NULL)
 *             distances[i] = sqrtf(msd)             # <<<<<<<<<<<<<<
 *     else:
 *         for i in range(n_frames):
 */
                              __pyx_t_20 = __pyx_v_i;
                              *((float *) ( /* dim=0 */ (__pyx_v_distances.data + __pyx_t_20 * __pyx_v_distances.strides[0]) )) = sqrtf(__pyx_v_msd);
                          }
                      }
                  }
              }
          }
          #if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
              #undef likely
              #undef unlikely
              #define likely(x)   __builtin_expect(!!(x), 1)
              #define unlikely(x) __builtin_expect(!!(x), 0)
          #endif
        }

        /* "_rmsd.pyx":316
 * 
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):             # <<<<<<<<<<<<<<
 *             msd = msd_atom_major(n_atoms, n_atoms,  &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i], 0, NULL)
 *             distances[i] = sqrtf(msd)
 */
        /*finally:*/ {
          /*normal exit:*/{
            #ifdef WITH_THREAD
            Py_BLOCK_THREADS
            #endif
            goto __pyx_L12;
          }
          __pyx_L12:;
        }
    }

    /* "_rmsd.pyx":315
 *     cdef float[:] distances = np.zeros(n_frames, dtype=np.float32)
 * 
 *     if parallel == True:             # <<<<<<<<<<<<<<
 *         for i in prange(n_frames, nogil=True):
 *             msd = msd_atom_major(n_atoms, n_atoms,  &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i], 0, NULL)
 */
    goto __pyx_L9;
  }

  /* "_rmsd.pyx":320
 *             distances[i] = sqrtf(msd)
 *     else:
 *         for i in range(n_frames):             # <<<<<<<<<<<<<<
 *             msd = msd_atom_major(n_atoms, n_atoms, &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i], 0, NULL)
 *             distances[i] = sqrtf(msd)
 */
  /*else*/ {
    __pyx_t_9 = __pyx_v_n_frames;
    for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_9; __pyx_t_11+=1) {
      __pyx_v_i = __pyx_t_11;

      /* "_rmsd.pyx":321
 *     else:
 *         for i in range(n_frames):
 *             msd = msd_atom_major(n_atoms, n_atoms, &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i], 0, NULL)             # <<<<<<<<<<<<<<
 *             distances[i] = sqrtf(msd)
 * 
 */
      __pyx_t_21 = __pyx_v_frame;
      __pyx_t_22 = 0;
      __pyx_t_23 = 0;
      __pyx_t_24 = __pyx_v_i;
      __pyx_t_25 = 0;
      __pyx_t_26 = 0;
      __pyx_t_27 = __pyx_v_frame;
      __pyx_t_28 = __pyx_v_i;
      __pyx_v_msd = msd_atom_major(__pyx_v_n_atoms, __pyx_v_n_atoms, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz1.data + __pyx_t_21 * __pyx_v_xyz1.strides[0]) ) + __pyx_t_22 * __pyx_v_xyz1.strides[1]) )) + __pyx_t_23)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz2.data + __pyx_t_24 * __pyx_v_xyz2.strides[0]) ) + __pyx_t_25 * __pyx_v_xyz2.strides[1]) )) + __pyx_t_26)) )))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g1.data) + __pyx_t_27)) ))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g2.data) + __pyx_t_28)) ))), 0, NULL);

      /* "_rmsd.pyx":322
 *         for i in range(n_frames):
 *             msd = msd_atom_major(n_atoms, n_atoms, &xyz1[frame, 0, 0], &xyz2[i, 0, 0], g1[frame], g2[i], 0, NULL)
 *             distances[i] = sqrtf(msd)             # <<<<<<<<<<<<<<
 * 
 *     return np.array(distances, copy=False)
 */
      __pyx_t_29 = __pyx_v_i;
      *((float *) ( /* dim=0 */ (__pyx_v_distances.data + __pyx_t_29 * __pyx_v_distances.strides[0]) )) = sqrtf(__pyx_v_msd);
    }
  }
  __pyx_L9:;

  /* "_rmsd.pyx":324
 *             distances[i] = sqrtf(msd)
 * 
 *     return np.array(distances, copy=False)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_7 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 324; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_array); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 324; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_7 = __pyx_memoryview_fromslice(__pyx_v_distances, 1, (PyObject *(*)(char *)) __pyx_memview_get_float, (int (*)(char *, PyObject *)) __pyx_memview_set_float, 0);; if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 324; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 324; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_7);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_7);
  __pyx_t_7 = 0;
  __pyx_t_7 = PyDict_New(); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 324; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  if (PyDict_SetItem(__pyx_t_7, __pyx_n_s_copy, Py_False) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 324; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_3, __pyx_t_7); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 324; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "_rmsd.pyx":271
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleRMSDs_atom_major(float[:, :, ::1] xyz1 not None, float[:, :, ::1] xyz2 not None,             # <<<<<<<<<<<<<<
 *                                 float[::1] g1 not None, float[::1] g2 not None, int frame,
 *                                 bool parallel=True):
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __PYX_XDEC_MEMVIEW(&__pyx_t_8, 1);
  __Pyx_AddTraceback("_rmsd.getMultipleRMSDs_atom_major", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __PYX_XDEC_MEMVIEW(&__pyx_v_distances, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_xyz1, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_xyz2, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_g1, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_g2, 1);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "_rmsd.pyx":329
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def superpose_atom_major(float[:, :, ::1] xyz_align_target not None,             # <<<<<<<<<<<<<<
 *                          float[:, :, ::1] xyz_align_mobile not None,
 *                          float[::1] g_target not None, float[::1] g_mobile not None,
 */

/* Python wrapper */
static PyObject *__pyx_pw_5_rmsd_9superpose_atom_major(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static char __pyx_doc_5_rmsd_8superpose_atom_major[] = "superpose_atom_major(xyz_target, xyz_mobile, g_target, g_mobile, xyz_mobile_displace)\n\n    Superpose each frame in xyz2 upon a frame in xyz1\n\n    Parameters\n    ----------\n    xyz_align_target : np.ndarray, shape=(n_frames, n_atoms, 3), dtype=float32\n        Coordinates of reference frame to align to.\n    xyz_align_mobile: np.ndarray, shape=(n_frames, n_atoms, 3), dtype=float32\n        Coordinates of the mobile trajectory to align to target the target.\n    g_target : np.ndarray, shape = (n_frames), dtype=float32\n        Pre-calculated G factors (traces) for each frame in xyz_target\n    g_mobile : np.ndarray, shape = (n_frames), dtype=float32\n        Pre-calculated G factors (traces) for each frame in xyz_mobile\n    xyz_displace_mobile : np.ndarray, shape=(n_frames, n_atoms, 3), dtype=float32\n        The coordinates of the mobile trajectory to displace\n    target_frame : int\n        The particular frame in xyz_align_target / g_target to align the mobile\n        trajectory  to.\n    parallel : bool, default=True\n        Run the calculation using multiple cores simultaneously.\n    ";
static PyMethodDef __pyx_mdef_5_rmsd_9superpose_atom_major = {"superpose_atom_major", (PyCFunction)__pyx_pw_5_rmsd_9superpose_atom_major, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5_rmsd_8superpose_atom_major};
static PyObject *__pyx_pw_5_rmsd_9superpose_atom_major(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  __Pyx_memviewslice __pyx_v_xyz_align_target = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_xyz_align_mobile = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_g_target = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_g_mobile = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_xyz_displace_mobile = { 0, 0, { 0 }, { 0 }, { 0 } };
  int __pyx_v_target_frame;
  PyBoolObject *__pyx_v_parallel = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("superpose_atom_major (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_xyz_align_target,&__pyx_n_s_xyz_align_mobile,&__pyx_n_s_g_target,&__pyx_n_s_g_mobile,&__pyx_n_s_xyz_displace_mobile,&__pyx_n_s_target_frame,&__pyx_n_s_parallel,0};
    PyObject* values[7] = {0,0,0,0,0,0,0};

    /* "_rmsd.pyx":333
 *                          float[::1] g_target not None, float[::1] g_mobile not None,
 *                          float[:, :, ::1] xyz_displace_mobile not None, int target_frame,
 *                          bool parallel=True):             # <<<<<<<<<<<<<<
 *     """superpose_atom_major(xyz_target, xyz_mobile, g_target, g_mobile, xyz_mobile_displace)
 * 
 */
    values[6] = (PyObject *)((PyBoolObject *)Py_True);
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_xyz_align_target)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        case  1:
        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_xyz_align_mobile)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("superpose_atom_major", 0, 6, 7, 1); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  2:
        if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_g_target)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("superpose_atom_major", 0, 6, 7, 2); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  3:
        if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_g_mobile)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("superpose_atom_major", 0, 6, 7, 3); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  4:
        if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_xyz_displace_mobile)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("superpose_atom_major", 0, 6, 7, 4); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  5:
        if (likely((values[5] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_target_frame)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("superpose_atom_major", 0, 6, 7, 5); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  6:
        if (kw_args > 0) {
          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_parallel);
          if (value) { values[6] = value; kw_args--; }
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "superpose_atom_major") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
      }
    } else {
      switch (PyTuple_GET_SIZE(__pyx_args)) {
        case  7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        break;
        default: goto __pyx_L5_argtuple_error;
      }
    }
    __pyx_v_xyz_align_target = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(values[0]); if (unlikely(!__pyx_v_xyz_align_target.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_xyz_align_mobile = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(values[1]); if (unlikely(!__pyx_v_xyz_align_mobile.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 330; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_g_target = __Pyx_PyObject_to_MemoryviewSlice_dc_float(values[2]); if (unlikely(!__pyx_v_g_target.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 331; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_g_mobile = __Pyx_PyObject_to_MemoryviewSlice_dc_float(values[3]); if (unlikely(!__pyx_v_g_mobile.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 331; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_xyz_displace_mobile = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(values[4]); if (unlikely(!__pyx_v_xyz_displace_mobile.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 332; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_target_frame = __Pyx_PyInt_As_int(values[5]); if (unlikely((__pyx_v_target_frame == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 332; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_parallel = ((PyBoolObject *)values[6]);
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("superpose_atom_major", 0, 6, 7, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
  __pyx_L3_error:;
  __Pyx_AddTraceback("_rmsd.superpose_atom_major", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  if (unlikely(((PyObject *)__pyx_v_xyz_align_target.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "xyz_align_target"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_xyz_align_mobile.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "xyz_align_mobile"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 330; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_g_target.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "g_target"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 331; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_g_mobile.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "g_mobile"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 331; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_xyz_displace_mobile.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "xyz_displace_mobile"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 332; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_parallel), __pyx_ptype_7cpython_4bool_bool, 1, "parallel", 0))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 333; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_r = __pyx_pf_5_rmsd_8superpose_atom_major(__pyx_self, __pyx_v_xyz_align_target, __pyx_v_xyz_align_mobile, __pyx_v_g_target, __pyx_v_g_mobile, __pyx_v_xyz_displace_mobile, __pyx_v_target_frame, __pyx_v_parallel);

  /* "_rmsd.pyx":329
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def superpose_atom_major(float[:, :, ::1] xyz_align_target not None,             # <<<<<<<<<<<<<<
 *                          float[:, :, ::1] xyz_align_mobile not None,
 *                          float[::1] g_target not None, float[::1] g_mobile not None,
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5_rmsd_8superpose_atom_major(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_xyz_align_target, __Pyx_memviewslice __pyx_v_xyz_align_mobile, __Pyx_memviewslice __pyx_v_g_target, __Pyx_memviewslice __pyx_v_g_mobile, __Pyx_memviewslice __pyx_v_xyz_displace_mobile, int __pyx_v_target_frame, PyBoolObject *__pyx_v_parallel) {
  int __pyx_v_i;
  int __pyx_v_n_frames;
  int __pyx_v_n_atoms_align;
  int __pyx_v_n_atoms_displace;
  __Pyx_memviewslice __pyx_v_rot = { 0, 0, { 0 }, { 0 }, { 0 } };
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  __Pyx_memviewslice __pyx_t_7 = { 0, 0, { 0 }, { 0 }, { 0 } };
  int __pyx_t_8;
  int __pyx_t_9;
  int __pyx_t_10;
  Py_ssize_t __pyx_t_11;
  Py_ssize_t __pyx_t_12;
  Py_ssize_t __pyx_t_13;
  Py_ssize_t __pyx_t_14;
  Py_ssize_t __pyx_t_15;
  Py_ssize_t __pyx_t_16;
  Py_ssize_t __pyx_t_17;
  Py_ssize_t __pyx_t_18;
  Py_ssize_t __pyx_t_19;
  Py_ssize_t __pyx_t_20;
  Py_ssize_t __pyx_t_21;
  Py_ssize_t __pyx_t_22;
  Py_ssize_t __pyx_t_23;
  Py_ssize_t __pyx_t_24;
  Py_ssize_t __pyx_t_25;
  Py_ssize_t __pyx_t_26;
  Py_ssize_t __pyx_t_27;
  Py_ssize_t __pyx_t_28;
  Py_ssize_t __pyx_t_29;
  Py_ssize_t __pyx_t_30;
  Py_ssize_t __pyx_t_31;
  Py_ssize_t __pyx_t_32;
  Py_ssize_t __pyx_t_33;
  Py_ssize_t __pyx_t_34;
  Py_ssize_t __pyx_t_35;
  Py_ssize_t __pyx_t_36;
  Py_ssize_t __pyx_t_37;
  Py_ssize_t __pyx_t_38;
  Py_ssize_t __pyx_t_39;
  Py_ssize_t __pyx_t_40;
  Py_ssize_t __pyx_t_41;
  Py_ssize_t __pyx_t_42;
  Py_ssize_t __pyx_t_43;
  Py_ssize_t __pyx_t_44;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("superpose_atom_major", 0);

  /* "_rmsd.pyx":357
 *     """
 *     cdef int i
 *     cdef int n_frames = xyz_align_mobile.shape[0]             # <<<<<<<<<<<<<<
 *     cdef int n_atoms_align = xyz_align_target.shape[1]
 *     cdef int n_atoms_displace = xyz_displace_mobile.shape[1]
 */
  __pyx_v_n_frames = (__pyx_v_xyz_align_mobile.shape[0]);

  /* "_rmsd.pyx":358
 *     cdef int i
 *     cdef int n_frames = xyz_align_mobile.shape[0]
 *     cdef int n_atoms_align = xyz_align_target.shape[1]             # <<<<<<<<<<<<<<
 *     cdef int n_atoms_displace = xyz_displace_mobile.shape[1]
 *     if not (xyz_align_target.shape[1]  == xyz_align_mobile.shape[1]):
 */
  __pyx_v_n_atoms_align = (__pyx_v_xyz_align_target.shape[1]);

  /* "_rmsd.pyx":359
 *     cdef int n_frames = xyz_align_mobile.shape[0]
 *     cdef int n_atoms_align = xyz_align_target.shape[1]
 *     cdef int n_atoms_displace = xyz_displace_mobile.shape[1]             # <<<<<<<<<<<<<<
 *     if not (xyz_align_target.shape[1]  == xyz_align_mobile.shape[1]):
 *         raise ValueError("Input arrays must have same number of atoms. "
 */
  __pyx_v_n_atoms_displace = (__pyx_v_xyz_displace_mobile.shape[1]);

  /* "_rmsd.pyx":360
 *     cdef int n_atoms_align = xyz_align_target.shape[1]
 *     cdef int n_atoms_displace = xyz_displace_mobile.shape[1]
 *     if not (xyz_align_target.shape[1]  == xyz_align_mobile.shape[1]):             # <<<<<<<<<<<<<<
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (
 */
  __pyx_t_1 = ((!(((__pyx_v_xyz_align_target.shape[1]) == (__pyx_v_xyz_align_mobile.shape[1])) != 0)) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":363
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (
 *                          xyz_align_target.shape[1],             # <<<<<<<<<<<<<<
 *                          xyz_align_mobile.shape[1]))
 *     if not xyz_align_mobile.shape[0] == xyz_displace_mobile.shape[0]:
 */
    __pyx_t_2 = PyInt_FromSsize_t((__pyx_v_xyz_align_target.shape[1])); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);

    /* "_rmsd.pyx":364
 *                          "found %d and %d." % (
 *                          xyz_align_target.shape[1],
 *                          xyz_align_mobile.shape[1]))             # <<<<<<<<<<<<<<
 *     if not xyz_align_mobile.shape[0] == xyz_displace_mobile.shape[0]:
 *         raise ValueError("xyz_align_mobile and xyz_displace_mobile must contain the same number of frames")
 */
    __pyx_t_3 = PyInt_FromSsize_t((__pyx_v_xyz_align_mobile.shape[1])); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 364; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);

    /* "_rmsd.pyx":363
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (
 *                          xyz_align_target.shape[1],             # <<<<<<<<<<<<<<
 *                          xyz_align_mobile.shape[1]))
 *     if not xyz_align_mobile.shape[0] == xyz_displace_mobile.shape[0]:
 */
    __pyx_t_4 = PyTuple_New(2); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_GIVEREF(__pyx_t_2);
    PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_2);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_3);
    __pyx_t_2 = 0;
    __pyx_t_3 = 0;

    /* "_rmsd.pyx":362
 *     if not (xyz_align_target.shape[1]  == xyz_align_mobile.shape[1]):
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (             # <<<<<<<<<<<<<<
 *                          xyz_align_target.shape[1],
 *                          xyz_align_mobile.shape[1]))
 */
    __pyx_t_3 = __Pyx_PyString_Format(__pyx_kp_s_Input_arrays_must_have_same_numb, __pyx_t_4); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 362; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "_rmsd.pyx":361
 *     cdef int n_atoms_displace = xyz_displace_mobile.shape[1]
 *     if not (xyz_align_target.shape[1]  == xyz_align_mobile.shape[1]):
 *         raise ValueError("Input arrays must have same number of atoms. "             # <<<<<<<<<<<<<<
 *                          "found %d and %d." % (
 *                          xyz_align_target.shape[1],
 */
    __pyx_t_4 = PyTuple_New(1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 361; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_3);
    __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_4, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 361; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 361; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":360
 *     cdef int n_atoms_align = xyz_align_target.shape[1]
 *     cdef int n_atoms_displace = xyz_displace_mobile.shape[1]
 *     if not (xyz_align_target.shape[1]  == xyz_align_mobile.shape[1]):             # <<<<<<<<<<<<<<
 *         raise ValueError("Input arrays must have same number of atoms. "
 *                          "found %d and %d." % (
 */
  }

  /* "_rmsd.pyx":365
 *                          xyz_align_target.shape[1],
 *                          xyz_align_mobile.shape[1]))
 *     if not xyz_align_mobile.shape[0] == xyz_displace_mobile.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("xyz_align_mobile and xyz_displace_mobile must contain the same number of frames")
 * 
 */
  __pyx_t_1 = ((!(((__pyx_v_xyz_align_mobile.shape[0]) == (__pyx_v_xyz_displace_mobile.shape[0])) != 0)) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":366
 *                          xyz_align_mobile.shape[1]))
 *     if not xyz_align_mobile.shape[0] == xyz_displace_mobile.shape[0]:
 *         raise ValueError("xyz_align_mobile and xyz_displace_mobile must contain the same number of frames")             # <<<<<<<<<<<<<<
 * 
 *     # we could get away with using less memory here: we only need 1 rotation
 */
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__9, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 366; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 366; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":365
 *                          xyz_align_target.shape[1],
 *                          xyz_align_mobile.shape[1]))
 *     if not xyz_align_mobile.shape[0] == xyz_displace_mobile.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("xyz_align_mobile and xyz_displace_mobile must contain the same number of frames")
 * 
 */
  }

  /* "_rmsd.pyx":370
 *     # we could get away with using less memory here: we only need 1 rotation
 *     # matrix in serial mode and 1 rotation matrix per thread in parallel mode.
 *     cdef float[:, :, ::1] rot = np.zeros((n_frames, 3, 3), dtype=np.float32)             # <<<<<<<<<<<<<<
 * 
 *     if parallel == True:
 */
  __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 370; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_zeros); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 370; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_n_frames); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 370; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_2 = PyTuple_New(3); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 370; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_3);
  PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_3);
  __Pyx_INCREF(__pyx_int_3);
  __Pyx_GIVEREF(__pyx_int_3);
  PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_int_3);
  __Pyx_INCREF(__pyx_int_3);
  __Pyx_GIVEREF(__pyx_int_3);
  PyTuple_SET_ITEM(__pyx_t_2, 2, __pyx_int_3);
  __pyx_t_3 = 0;
  __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 370; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_2);
  __pyx_t_2 = 0;
  __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 370; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_5 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 370; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_float32); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 370; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (PyDict_SetItem(__pyx_t_2, __pyx_n_s_dtype, __pyx_t_6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 370; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_4, __pyx_t_3, __pyx_t_2); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 370; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_7 = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(__pyx_t_6);
  if (unlikely(!__pyx_t_7.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 370; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_v_rot = __pyx_t_7;
  __pyx_t_7.memview = NULL;
  __pyx_t_7.data = NULL;

  /* "_rmsd.pyx":372
 *     cdef float[:, :, ::1] rot = np.zeros((n_frames, 3, 3), dtype=np.float32)
 * 
 *     if parallel == True:             # <<<<<<<<<<<<<<
 *         for i in prange(n_frames, nogil=True):
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],
 */
  __pyx_t_6 = PyObject_RichCompare(((PyObject *)__pyx_v_parallel), Py_True, Py_EQ); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 372; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 372; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  if (__pyx_t_1) {

    /* "_rmsd.pyx":373
 * 
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):             # <<<<<<<<<<<<<<
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],
 *                            &xyz_align_target[target_frame, 0, 0],
 */
    {
        #ifdef WITH_THREAD
        PyThreadState *_save;
        Py_UNBLOCK_THREADS
        #endif
        /*try:*/ {
          __pyx_t_8 = __pyx_v_n_frames;
          if (1 == 0) abort();
          {
              #if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
                  #undef likely
                  #undef unlikely
                  #define likely(x)   (x)
                  #define unlikely(x) (x)
              #endif
              __pyx_t_10 = (__pyx_t_8 - 0) / 1;
              if (__pyx_t_10 > 0)
              {
                  #ifdef _OPENMP
                  #pragma omp parallel private(__pyx_t_11, __pyx_t_17, __pyx_t_24, __pyx_t_22, __pyx_t_23, __pyx_t_21, __pyx_t_16, __pyx_t_13, __pyx_t_20, __pyx_t_26, __pyx_t_15, __pyx_t_12, __pyx_t_18, __pyx_t_19, __pyx_t_14, __pyx_t_27, __pyx_t_25)
                  #endif /* _OPENMP */
                  {
                      #ifdef _OPENMP
                      #pragma omp for firstprivate(__pyx_v_i) lastprivate(__pyx_v_i)
                      #endif /* _OPENMP */
                      for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_10; __pyx_t_9++){
                          {
                              __pyx_v_i = 0 + 1 * __pyx_t_9;

                              /* "_rmsd.pyx":374
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],             # <<<<<<<<<<<<<<
 *                            &xyz_align_target[target_frame, 0, 0],
 *                            g_target[target_frame], g_mobile[i], 1, &rot[i, 0, 0])
 */
                              __pyx_t_11 = __pyx_v_i;
                              __pyx_t_12 = 0;
                              __pyx_t_13 = 0;

                              /* "_rmsd.pyx":375
 *         for i in prange(n_frames, nogil=True):
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],
 *                            &xyz_align_target[target_frame, 0, 0],             # <<<<<<<<<<<<<<
 *                            g_target[target_frame], g_mobile[i], 1, &rot[i, 0, 0])
 *             rot_atom_major(n_atoms_displace, &xyz_displace_mobile[i, 0, 0], &rot[i, 0, 0])
 */
                              __pyx_t_14 = __pyx_v_target_frame;
                              __pyx_t_15 = 0;
                              __pyx_t_16 = 0;

                              /* "_rmsd.pyx":376
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],
 *                            &xyz_align_target[target_frame, 0, 0],
 *                            g_target[target_frame], g_mobile[i], 1, &rot[i, 0, 0])             # <<<<<<<<<<<<<<
 *             rot_atom_major(n_atoms_displace, &xyz_displace_mobile[i, 0, 0], &rot[i, 0, 0])
 *     else:
 */
                              __pyx_t_17 = __pyx_v_target_frame;
                              __pyx_t_18 = __pyx_v_i;
                              __pyx_t_19 = __pyx_v_i;
                              __pyx_t_20 = 0;
                              __pyx_t_21 = 0;

                              /* "_rmsd.pyx":374
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],             # <<<<<<<<<<<<<<
 *                            &xyz_align_target[target_frame, 0, 0],
 *                            g_target[target_frame], g_mobile[i], 1, &rot[i, 0, 0])
 */
                              msd_atom_major(__pyx_v_n_atoms_align, __pyx_v_n_atoms_align, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_align_mobile.data + __pyx_t_11 * __pyx_v_xyz_align_mobile.strides[0]) ) + __pyx_t_12 * __pyx_v_xyz_align_mobile.strides[1]) )) + __pyx_t_13)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_align_target.data + __pyx_t_14 * __pyx_v_xyz_align_target.strides[0]) ) + __pyx_t_15 * __pyx_v_xyz_align_target.strides[1]) )) + __pyx_t_16)) )))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g_target.data) + __pyx_t_17)) ))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g_mobile.data) + __pyx_t_18)) ))), 1, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_rot.data + __pyx_t_19 * __pyx_v_rot.strides[0]) ) + __pyx_t_20 * __pyx_v_rot.strides[1]) )) + __pyx_t_21)) )))));

                              /* "_rmsd.pyx":377
 *                            &xyz_align_target[target_frame, 0, 0],
 *                            g_target[target_frame], g_mobile[i], 1, &rot[i, 0, 0])
 *             rot_atom_major(n_atoms_displace, &xyz_displace_mobile[i, 0, 0], &rot[i, 0, 0])             # <<<<<<<<<<<<<<
 *     else:
 *         for i in range(n_frames):
 */
                              __pyx_t_22 = __pyx_v_i;
                              __pyx_t_23 = 0;
                              __pyx_t_24 = 0;
                              __pyx_t_25 = __pyx_v_i;
                              __pyx_t_26 = 0;
                              __pyx_t_27 = 0;
                              rot_atom_major(__pyx_v_n_atoms_displace, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_displace_mobile.data + __pyx_t_22 * __pyx_v_xyz_displace_mobile.strides[0]) ) + __pyx_t_23 * __pyx_v_xyz_displace_mobile.strides[1]) )) + __pyx_t_24)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_rot.data + __pyx_t_25 * __pyx_v_rot.strides[0]) ) + __pyx_t_26 * __pyx_v_rot.strides[1]) )) + __pyx_t_27)) )))));
                          }
                      }
                  }
              }
          }
          #if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
              #undef likely
              #undef unlikely
              #define likely(x)   __builtin_expect(!!(x), 1)
              #define unlikely(x) __builtin_expect(!!(x), 0)
          #endif
        }

        /* "_rmsd.pyx":373
 * 
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):             # <<<<<<<<<<<<<<
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],
 *                            &xyz_align_target[target_frame, 0, 0],
 */
        /*finally:*/ {
          /*normal exit:*/{
            #ifdef WITH_THREAD
            Py_BLOCK_THREADS
            #endif
            goto __pyx_L8;
          }
          __pyx_L8:;
        }
    }

    /* "_rmsd.pyx":372
 *     cdef float[:, :, ::1] rot = np.zeros((n_frames, 3, 3), dtype=np.float32)
 * 
 *     if parallel == True:             # <<<<<<<<<<<<<<
 *         for i in prange(n_frames, nogil=True):
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],
 */
    goto __pyx_L5;
  }

  /* "_rmsd.pyx":379
 *             rot_atom_major(n_atoms_displace, &xyz_displace_mobile[i, 0, 0], &rot[i, 0, 0])
 *     else:
 *         for i in range(n_frames):             # <<<<<<<<<<<<<<
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],
 *                            &xyz_align_target[target_frame, 0, 0],
 */
  /*else*/ {
    __pyx_t_10 = __pyx_v_n_frames;
    for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_10; __pyx_t_9+=1) {
      __pyx_v_i = __pyx_t_9;

      /* "_rmsd.pyx":380
 *     else:
 *         for i in range(n_frames):
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],             # <<<<<<<<<<<<<<
 *                            &xyz_align_target[target_frame, 0, 0],
 *                            g_target[target_frame], g_mobile[i], 1, &rot[i, 0, 0])
 */
      __pyx_t_28 = __pyx_v_i;
      __pyx_t_29 = 0;
      __pyx_t_30 = 0;

      /* "_rmsd.pyx":381
 *         for i in range(n_frames):
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],
 *                            &xyz_align_target[target_frame, 0, 0],             # <<<<<<<<<<<<<<
 *                            g_target[target_frame], g_mobile[i], 1, &rot[i, 0, 0])
 *             rot_atom_major(n_atoms_displace, &xyz_displace_mobile[i, 0, 0], &rot[i, 0, 0])
 */
      __pyx_t_31 = __pyx_v_target_frame;
      __pyx_t_32 = 0;
      __pyx_t_33 = 0;

      /* "_rmsd.pyx":382
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],
 *                            &xyz_align_target[target_frame, 0, 0],
 *                            g_target[target_frame], g_mobile[i], 1, &rot[i, 0, 0])             # <<<<<<<<<<<<<<
 *             rot_atom_major(n_atoms_displace, &xyz_displace_mobile[i, 0, 0], &rot[i, 0, 0])
 * 
 */
      __pyx_t_34 = __pyx_v_target_frame;
      __pyx_t_35 = __pyx_v_i;
      __pyx_t_36 = __pyx_v_i;
      __pyx_t_37 = 0;
      __pyx_t_38 = 0;

      /* "_rmsd.pyx":380
 *     else:
 *         for i in range(n_frames):
 *             msd_atom_major(n_atoms_align, n_atoms_align, &xyz_align_mobile[i, 0, 0],             # <<<<<<<<<<<<<<
 *                            &xyz_align_target[target_frame, 0, 0],
 *                            g_target[target_frame], g_mobile[i], 1, &rot[i, 0, 0])
 */
      msd_atom_major(__pyx_v_n_atoms_align, __pyx_v_n_atoms_align, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_align_mobile.data + __pyx_t_28 * __pyx_v_xyz_align_mobile.strides[0]) ) + __pyx_t_29 * __pyx_v_xyz_align_mobile.strides[1]) )) + __pyx_t_30)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_align_target.data + __pyx_t_31 * __pyx_v_xyz_align_target.strides[0]) ) + __pyx_t_32 * __pyx_v_xyz_align_target.strides[1]) )) + __pyx_t_33)) )))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g_target.data) + __pyx_t_34)) ))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g_mobile.data) + __pyx_t_35)) ))), 1, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_rot.data + __pyx_t_36 * __pyx_v_rot.strides[0]) ) + __pyx_t_37 * __pyx_v_rot.strides[1]) )) + __pyx_t_38)) )))));

      /* "_rmsd.pyx":383
 *                            &xyz_align_target[target_frame, 0, 0],
 *                            g_target[target_frame], g_mobile[i], 1, &rot[i, 0, 0])
 *             rot_atom_major(n_atoms_displace, &xyz_displace_mobile[i, 0, 0], &rot[i, 0, 0])             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_t_39 = __pyx_v_i;
      __pyx_t_40 = 0;
      __pyx_t_41 = 0;
      __pyx_t_42 = __pyx_v_i;
      __pyx_t_43 = 0;
      __pyx_t_44 = 0;
      rot_atom_major(__pyx_v_n_atoms_displace, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_displace_mobile.data + __pyx_t_39 * __pyx_v_xyz_displace_mobile.strides[0]) ) + __pyx_t_40 * __pyx_v_xyz_displace_mobile.strides[1]) )) + __pyx_t_41)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_rot.data + __pyx_t_42 * __pyx_v_rot.strides[0]) ) + __pyx_t_43 * __pyx_v_rot.strides[1]) )) + __pyx_t_44)) )))));
    }
  }
  __pyx_L5:;

  /* "_rmsd.pyx":329
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def superpose_atom_major(float[:, :, ::1] xyz_align_target not None,             # <<<<<<<<<<<<<<
 *                          float[:, :, ::1] xyz_align_mobile not None,
 *                          float[::1] g_target not None, float[::1] g_mobile not None,
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __PYX_XDEC_MEMVIEW(&__pyx_t_7, 1);
  __Pyx_AddTraceback("_rmsd.superpose_atom_major", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __PYX_XDEC_MEMVIEW(&__pyx_v_rot, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_xyz_align_target, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_xyz_align_mobile, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_g_target, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_g_mobile, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_xyz_displace_mobile, 1);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "_rmsd.pyx":388
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleAlignDisplaceRMSDs_atom_major(float[:, :, ::1] xyz_align1 not None,             # <<<<<<<<<<<<<<
 *     float[:, :, ::1] xyz_align2 not None, float[::1] g_align1 not None,
 *     float[::1] g_align2 not None, float[:, :, ::1] xyz_displ1 not None,
 */

/* Python wrapper */
static PyObject *__pyx_pw_5_rmsd_11getMultipleAlignDisplaceRMSDs_atom_major(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static char __pyx_doc_5_rmsd_10getMultipleAlignDisplaceRMSDs_atom_major[] = "getMultipleAlignDisplaceRMSDs_atom_major(xyz_align1, xyz_align2, g_align1, g_align2, xyz_displ1, xyz_displ2, n_atoms_align, n_atoms_displ, frame, parallel=True)\n\n    Calculate the RMSD of several frames to a single frame, with the\n    coordinates laid out in atom-major orders, where alignments are computed\n    by determining the optimal rotation matrix to align `xyz_align1` against\n    `xyz_align2`, and then using this rotation matrix displace `xyz_displ1`,\n    and computing its mean-squared-displacement with respect to `xyz_displ2`.\n\n    Parameters\n    ----------\n    xyz_align1 : np.ndarray, shape=(n_frames, n_atoms_align_padded, 3), dtype=float32\n        Alignment coordinates of reference frame.\n    xyz_align2 : np.ndarray, shape=(n_frames, n_atoms_align_padded, 3), dtype=float32\n        Alignment coordinates of frames to iterate over.\n    g_align1 : np.ndarray, shape = (n_frames), dtype=float32\n        Pre-calculated G factors (traces) for each frame in xyz1\n    g_align2 : np.ndarray, shape = (n_frames), dtype=float32\n        Pre-calculated G factors (traces) for each frame in xyz2\n    xyz_displ1 : np.ndarray, shape=(n_frames, n_atoms_displ_padded, 3), dtype=float32\n        Displacement coordinates of reference frame.\n    xyz_displ2 : np.ndarray, shape=(n_frames, n_atoms_displ_padded, 3), dtype=float32\n        Displacement coordinates of frames to iterate over.\n    n_atoms_align : int\n        The number of true atoms in the alignment coordinates\n    n_atoms_displ : int\n        The number of true atoms in the displacement coordinates\n    frame : int\n        Index of the desired reference frame in xyz_align1 / xyz_displ1.\n    parallel : bool, default True\n        If True, use OpenMP parallelization.\n\n    Returns\n    -------\n    rmsds: np.ndarray, shape=(len(xyz2),)\n        RMSDs between xyz_displ1[frame] and all of xyz_displ2, after the alignment that maximizes\n        the overlap between xyz_align1[frame] and all of xyz_align2""\n    rotations: np.ndarray, shape=(len(xyz2), 3, 3)\n        The rotation matrix for each of the alignments\n    ";
static PyMethodDef __pyx_mdef_5_rmsd_11getMultipleAlignDisplaceRMSDs_atom_major = {"getMultipleAlignDisplaceRMSDs_atom_major", (PyCFunction)__pyx_pw_5_rmsd_11getMultipleAlignDisplaceRMSDs_atom_major, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5_rmsd_10getMultipleAlignDisplaceRMSDs_atom_major};
static PyObject *__pyx_pw_5_rmsd_11getMultipleAlignDisplaceRMSDs_atom_major(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  __Pyx_memviewslice __pyx_v_xyz_align1 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_xyz_align2 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_g_align1 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_g_align2 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_xyz_displ1 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_xyz_displ2 = { 0, 0, { 0 }, { 0 }, { 0 } };
  int __pyx_v_n_atoms_align;
  int __pyx_v_n_atoms_displ;
  int __pyx_v_frame;
  PyBoolObject *__pyx_v_parallel = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("getMultipleAlignDisplaceRMSDs_atom_major (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_xyz_align1,&__pyx_n_s_xyz_align2,&__pyx_n_s_g_align1,&__pyx_n_s_g_align2,&__pyx_n_s_xyz_displ1,&__pyx_n_s_xyz_displ2,&__pyx_n_s_n_atoms_align,&__pyx_n_s_n_atoms_displ,&__pyx_n_s_frame,&__pyx_n_s_parallel,0};
    PyObject* values[10] = {0,0,0,0,0,0,0,0,0,0};

    /* "_rmsd.pyx":392
 *     float[::1] g_align2 not None, float[:, :, ::1] xyz_displ1 not None,
 *     float[:, :, ::1] xyz_displ2 not None, int n_atoms_align,
 *     int n_atoms_displ, int frame, bool parallel=True):             # <<<<<<<<<<<<<<
 *     """getMultipleAlignDisplaceRMSDs_atom_major(xyz_align1, xyz_align2, g_align1, g_align2, xyz_displ1, xyz_displ2, n_atoms_align, n_atoms_displ, frame, parallel=True)
 * 
 */
    values[9] = (PyObject *)((PyBoolObject *)Py_True);
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
        case  9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
        case  8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
        case  7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_xyz_align1)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        case  1:
        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_xyz_align2)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleAlignDisplaceRMSDs_atom_major", 0, 9, 10, 1); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  2:
        if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_g_align1)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleAlignDisplaceRMSDs_atom_major", 0, 9, 10, 2); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  3:
        if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_g_align2)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleAlignDisplaceRMSDs_atom_major", 0, 9, 10, 3); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  4:
        if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_xyz_displ1)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleAlignDisplaceRMSDs_atom_major", 0, 9, 10, 4); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  5:
        if (likely((values[5] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_xyz_displ2)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleAlignDisplaceRMSDs_atom_major", 0, 9, 10, 5); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  6:
        if (likely((values[6] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_n_atoms_align)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleAlignDisplaceRMSDs_atom_major", 0, 9, 10, 6); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  7:
        if (likely((values[7] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_n_atoms_displ)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleAlignDisplaceRMSDs_atom_major", 0, 9, 10, 7); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  8:
        if (likely((values[8] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_frame)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("getMultipleAlignDisplaceRMSDs_atom_major", 0, 9, 10, 8); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  9:
        if (kw_args > 0) {
          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_parallel);
          if (value) { values[9] = value; kw_args--; }
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "getMultipleAlignDisplaceRMSDs_atom_major") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
      }
    } else {
      switch (PyTuple_GET_SIZE(__pyx_args)) {
        case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
        case  9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
        values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
        values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        break;
        default: goto __pyx_L5_argtuple_error;
      }
    }
    __pyx_v_xyz_align1 = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(values[0]); if (unlikely(!__pyx_v_xyz_align1.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_xyz_align2 = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(values[1]); if (unlikely(!__pyx_v_xyz_align2.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 389; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_g_align1 = __Pyx_PyObject_to_MemoryviewSlice_dc_float(values[2]); if (unlikely(!__pyx_v_g_align1.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 389; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_g_align2 = __Pyx_PyObject_to_MemoryviewSlice_dc_float(values[3]); if (unlikely(!__pyx_v_g_align2.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 390; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_xyz_displ1 = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(values[4]); if (unlikely(!__pyx_v_xyz_displ1.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 390; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_xyz_displ2 = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(values[5]); if (unlikely(!__pyx_v_xyz_displ2.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 391; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_n_atoms_align = __Pyx_PyInt_As_int(values[6]); if (unlikely((__pyx_v_n_atoms_align == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 391; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_n_atoms_displ = __Pyx_PyInt_As_int(values[7]); if (unlikely((__pyx_v_n_atoms_displ == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 392; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_frame = __Pyx_PyInt_As_int(values[8]); if (unlikely((__pyx_v_frame == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 392; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_parallel = ((PyBoolObject *)values[9]);
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("getMultipleAlignDisplaceRMSDs_atom_major", 0, 9, 10, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
  __pyx_L3_error:;
  __Pyx_AddTraceback("_rmsd.getMultipleAlignDisplaceRMSDs_atom_major", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  if (unlikely(((PyObject *)__pyx_v_xyz_align1.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "xyz_align1"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_xyz_align2.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "xyz_align2"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 389; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_g_align1.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "g_align1"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 389; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_g_align2.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "g_align2"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 390; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_xyz_displ1.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "xyz_displ1"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 390; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(((PyObject *)__pyx_v_xyz_displ2.memview) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "xyz_displ2"); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 391; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_parallel), __pyx_ptype_7cpython_4bool_bool, 1, "parallel", 0))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 392; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_r = __pyx_pf_5_rmsd_10getMultipleAlignDisplaceRMSDs_atom_major(__pyx_self, __pyx_v_xyz_align1, __pyx_v_xyz_align2, __pyx_v_g_align1, __pyx_v_g_align2, __pyx_v_xyz_displ1, __pyx_v_xyz_displ2, __pyx_v_n_atoms_align, __pyx_v_n_atoms_displ, __pyx_v_frame, __pyx_v_parallel);

  /* "_rmsd.pyx":388
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleAlignDisplaceRMSDs_atom_major(float[:, :, ::1] xyz_align1 not None,             # <<<<<<<<<<<<<<
 *     float[:, :, ::1] xyz_align2 not None, float[::1] g_align1 not None,
 *     float[::1] g_align2 not None, float[:, :, ::1] xyz_displ1 not None,
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5_rmsd_10getMultipleAlignDisplaceRMSDs_atom_major(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_xyz_align1, __Pyx_memviewslice __pyx_v_xyz_align2, __Pyx_memviewslice __pyx_v_g_align1, __Pyx_memviewslice __pyx_v_g_align2, __Pyx_memviewslice __pyx_v_xyz_displ1, __Pyx_memviewslice __pyx_v_xyz_displ2, int __pyx_v_n_atoms_align, int __pyx_v_n_atoms_displ, int __pyx_v_frame, PyBoolObject *__pyx_v_parallel) {
  float __pyx_v_msd;
  Py_ssize_t __pyx_v_i;
  int __pyx_v_n_frames;
  int __pyx_v_n_align_atoms_padded;
  int __pyx_v_n_displ_atoms_padded;
  __Pyx_memviewslice __pyx_v_rot = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_v_distances = { 0, 0, { 0 }, { 0 }, { 0 } };
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  __Pyx_memviewslice __pyx_t_8 = { 0, 0, { 0 }, { 0 }, { 0 } };
  __Pyx_memviewslice __pyx_t_9 = { 0, 0, { 0 }, { 0 }, { 0 } };
  int __pyx_t_10;
  Py_ssize_t __pyx_t_11;
  Py_ssize_t __pyx_t_12;
  Py_ssize_t __pyx_t_13;
  Py_ssize_t __pyx_t_14;
  Py_ssize_t __pyx_t_15;
  Py_ssize_t __pyx_t_16;
  Py_ssize_t __pyx_t_17;
  Py_ssize_t __pyx_t_18;
  Py_ssize_t __pyx_t_19;
  Py_ssize_t __pyx_t_20;
  Py_ssize_t __pyx_t_21;
  Py_ssize_t __pyx_t_22;
  Py_ssize_t __pyx_t_23;
  Py_ssize_t __pyx_t_24;
  Py_ssize_t __pyx_t_25;
  Py_ssize_t __pyx_t_26;
  Py_ssize_t __pyx_t_27;
  Py_ssize_t __pyx_t_28;
  Py_ssize_t __pyx_t_29;
  Py_ssize_t __pyx_t_30;
  Py_ssize_t __pyx_t_31;
  Py_ssize_t __pyx_t_32;
  Py_ssize_t __pyx_t_33;
  Py_ssize_t __pyx_t_34;
  Py_ssize_t __pyx_t_35;
  Py_ssize_t __pyx_t_36;
  Py_ssize_t __pyx_t_37;
  Py_ssize_t __pyx_t_38;
  Py_ssize_t __pyx_t_39;
  Py_ssize_t __pyx_t_40;
  Py_ssize_t __pyx_t_41;
  Py_ssize_t __pyx_t_42;
  Py_ssize_t __pyx_t_43;
  Py_ssize_t __pyx_t_44;
  Py_ssize_t __pyx_t_45;
  Py_ssize_t __pyx_t_46;
  Py_ssize_t __pyx_t_47;
  Py_ssize_t __pyx_t_48;
  Py_ssize_t __pyx_t_49;
  Py_ssize_t __pyx_t_50;
  Py_ssize_t __pyx_t_51;
  Py_ssize_t __pyx_t_52;
  Py_ssize_t __pyx_t_53;
  Py_ssize_t __pyx_t_54;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("getMultipleAlignDisplaceRMSDs_atom_major", 0);

  /* "_rmsd.pyx":432
 *         The rotation matrix for each of the alignments
 *     """
 *     assert (xyz_align1.shape[2] == 3) and (xyz_align2.shape[2] == 3)             # <<<<<<<<<<<<<<
 *     assert (xyz_displ1.shape[2] == 3) and (xyz_displ2.shape[2] == 3)
 *     if not ((xyz_align1.shape[1] % 4 == 0) & (xyz_align2.shape[1] % 4 == 0)):
 */
  #ifndef CYTHON_WITHOUT_ASSERTIONS
  if (unlikely(!Py_OptimizeFlag)) {
    __pyx_t_2 = (((__pyx_v_xyz_align1.shape[2]) == 3) != 0);
    if (__pyx_t_2) {
    } else {
      __pyx_t_1 = __pyx_t_2;
      goto __pyx_L3_bool_binop_done;
    }
    __pyx_t_2 = (((__pyx_v_xyz_align2.shape[2]) == 3) != 0);
    __pyx_t_1 = __pyx_t_2;
    __pyx_L3_bool_binop_done:;
    if (unlikely(!__pyx_t_1)) {
      PyErr_SetNone(PyExc_AssertionError);
      {__pyx_filename = __pyx_f[0]; __pyx_lineno = 432; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
  }
  #endif

  /* "_rmsd.pyx":433
 *     """
 *     assert (xyz_align1.shape[2] == 3) and (xyz_align2.shape[2] == 3)
 *     assert (xyz_displ1.shape[2] == 3) and (xyz_displ2.shape[2] == 3)             # <<<<<<<<<<<<<<
 *     if not ((xyz_align1.shape[1] % 4 == 0) & (xyz_align2.shape[1] % 4 == 0)):
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "
 */
  #ifndef CYTHON_WITHOUT_ASSERTIONS
  if (unlikely(!Py_OptimizeFlag)) {
    __pyx_t_2 = (((__pyx_v_xyz_displ1.shape[2]) == 3) != 0);
    if (__pyx_t_2) {
    } else {
      __pyx_t_1 = __pyx_t_2;
      goto __pyx_L5_bool_binop_done;
    }
    __pyx_t_2 = (((__pyx_v_xyz_displ2.shape[2]) == 3) != 0);
    __pyx_t_1 = __pyx_t_2;
    __pyx_L5_bool_binop_done:;
    if (unlikely(!__pyx_t_1)) {
      PyErr_SetNone(PyExc_AssertionError);
      {__pyx_filename = __pyx_f[0]; __pyx_lineno = 433; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
  }
  #endif

  /* "_rmsd.pyx":434
 *     assert (xyz_align1.shape[2] == 3) and (xyz_align2.shape[2] == 3)
 *     assert (xyz_displ1.shape[2] == 3) and (xyz_displ2.shape[2] == 3)
 *     if not ((xyz_align1.shape[1] % 4 == 0) & (xyz_align2.shape[1] % 4 == 0)):             # <<<<<<<<<<<<<<
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "
 *                          "found %d and %d." % (xyz_align1.shape[1], xyz_align2.shape[1]))
 */
  __pyx_t_1 = ((!(((__Pyx_mod_Py_ssize_t((__pyx_v_xyz_align1.shape[1]), 4) == 0) & (__Pyx_mod_Py_ssize_t((__pyx_v_xyz_align2.shape[1]), 4) == 0)) != 0)) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":436
 *     if not ((xyz_align1.shape[1] % 4 == 0) & (xyz_align2.shape[1] % 4 == 0)):
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "
 *                          "found %d and %d." % (xyz_align1.shape[1], xyz_align2.shape[1]))             # <<<<<<<<<<<<<<
 *     if not ((xyz_displ1.shape[1] % 4 == 0) & (xyz_displ2.shape[1] % 4 == 0)):
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "
 */
    __pyx_t_3 = PyInt_FromSsize_t((__pyx_v_xyz_align1.shape[1])); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 436; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_4 = PyInt_FromSsize_t((__pyx_v_xyz_align2.shape[1])); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 436; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = PyTuple_New(2); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 436; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_3);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_4);
    __pyx_t_3 = 0;
    __pyx_t_4 = 0;
    __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Input_arrays_must_have_middle_di, __pyx_t_5); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 436; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;

    /* "_rmsd.pyx":435
 *     assert (xyz_displ1.shape[2] == 3) and (xyz_displ2.shape[2] == 3)
 *     if not ((xyz_align1.shape[1] % 4 == 0) & (xyz_align2.shape[1] % 4 == 0)):
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "             # <<<<<<<<<<<<<<
 *                          "found %d and %d." % (xyz_align1.shape[1], xyz_align2.shape[1]))
 *     if not ((xyz_displ1.shape[1] % 4 == 0) & (xyz_displ2.shape[1] % 4 == 0)):
 */
    __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 435; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_4);
    __pyx_t_4 = 0;
    __pyx_t_4 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_5, NULL); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 435; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_Raise(__pyx_t_4, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 435; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":434
 *     assert (xyz_align1.shape[2] == 3) and (xyz_align2.shape[2] == 3)
 *     assert (xyz_displ1.shape[2] == 3) and (xyz_displ2.shape[2] == 3)
 *     if not ((xyz_align1.shape[1] % 4 == 0) & (xyz_align2.shape[1] % 4 == 0)):             # <<<<<<<<<<<<<<
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "
 *                          "found %d and %d." % (xyz_align1.shape[1], xyz_align2.shape[1]))
 */
  }

  /* "_rmsd.pyx":437
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "
 *                          "found %d and %d." % (xyz_align1.shape[1], xyz_align2.shape[1]))
 *     if not ((xyz_displ1.shape[1] % 4 == 0) & (xyz_displ2.shape[1] % 4 == 0)):             # <<<<<<<<<<<<<<
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "
 *                          "found %d and %d." % (xyz_displ1.shape[1], xyz_displ2.shape[1]))
 */
  __pyx_t_1 = ((!(((__Pyx_mod_Py_ssize_t((__pyx_v_xyz_displ1.shape[1]), 4) == 0) & (__Pyx_mod_Py_ssize_t((__pyx_v_xyz_displ2.shape[1]), 4) == 0)) != 0)) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":439
 *     if not ((xyz_displ1.shape[1] % 4 == 0) & (xyz_displ2.shape[1] % 4 == 0)):
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "
 *                          "found %d and %d." % (xyz_displ1.shape[1], xyz_displ2.shape[1]))             # <<<<<<<<<<<<<<
 *     if not xyz_align1.shape[0] == xyz_displ1.shape[0]:
 *         raise ValueError("xyz_align1 and xyz_displ1 must contain the same number of frames")
 */
    __pyx_t_4 = PyInt_FromSsize_t((__pyx_v_xyz_displ1.shape[1])); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 439; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = PyInt_FromSsize_t((__pyx_v_xyz_displ2.shape[1])); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 439; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_3 = PyTuple_New(2); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 439; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_4);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_5);
    __pyx_t_4 = 0;
    __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_PyString_Format(__pyx_kp_s_Input_arrays_must_have_middle_di, __pyx_t_3); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 439; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

    /* "_rmsd.pyx":438
 *                          "found %d and %d." % (xyz_align1.shape[1], xyz_align2.shape[1]))
 *     if not ((xyz_displ1.shape[1] % 4 == 0) & (xyz_displ2.shape[1] % 4 == 0)):
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "             # <<<<<<<<<<<<<<
 *                          "found %d and %d." % (xyz_displ1.shape[1], xyz_displ2.shape[1]))
 *     if not xyz_align1.shape[0] == xyz_displ1.shape[0]:
 */
    __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 438; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_5);
    __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_3, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 438; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __Pyx_Raise(__pyx_t_5, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 438; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":437
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "
 *                          "found %d and %d." % (xyz_align1.shape[1], xyz_align2.shape[1]))
 *     if not ((xyz_displ1.shape[1] % 4 == 0) & (xyz_displ2.shape[1] % 4 == 0)):             # <<<<<<<<<<<<<<
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "
 *                          "found %d and %d." % (xyz_displ1.shape[1], xyz_displ2.shape[1]))
 */
  }

  /* "_rmsd.pyx":440
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "
 *                          "found %d and %d." % (xyz_displ1.shape[1], xyz_displ2.shape[1]))
 *     if not xyz_align1.shape[0] == xyz_displ1.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("xyz_align1 and xyz_displ1 must contain the same number of frames")
 *     if not xyz_align2.shape[0] == xyz_displ2.shape[0]:
 */
  __pyx_t_1 = ((!(((__pyx_v_xyz_align1.shape[0]) == (__pyx_v_xyz_displ1.shape[0])) != 0)) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":441
 *                          "found %d and %d." % (xyz_displ1.shape[1], xyz_displ2.shape[1]))
 *     if not xyz_align1.shape[0] == xyz_displ1.shape[0]:
 *         raise ValueError("xyz_align1 and xyz_displ1 must contain the same number of frames")             # <<<<<<<<<<<<<<
 *     if not xyz_align2.shape[0] == xyz_displ2.shape[0]:
 *         raise ValueError("xyz_align2 and xyz_displ2 must contain the same number of frames")
 */
    __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__10, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 441; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_Raise(__pyx_t_5, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 441; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":440
 *         raise ValueError("Input arrays must have middle dimension of 4*n, "
 *                          "found %d and %d." % (xyz_displ1.shape[1], xyz_displ2.shape[1]))
 *     if not xyz_align1.shape[0] == xyz_displ1.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("xyz_align1 and xyz_displ1 must contain the same number of frames")
 *     if not xyz_align2.shape[0] == xyz_displ2.shape[0]:
 */
  }

  /* "_rmsd.pyx":442
 *     if not xyz_align1.shape[0] == xyz_displ1.shape[0]:
 *         raise ValueError("xyz_align1 and xyz_displ1 must contain the same number of frames")
 *     if not xyz_align2.shape[0] == xyz_displ2.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("xyz_align2 and xyz_displ2 must contain the same number of frames")
 *     if frame >= xyz_align1.shape[0]:
 */
  __pyx_t_1 = ((!(((__pyx_v_xyz_align2.shape[0]) == (__pyx_v_xyz_displ2.shape[0])) != 0)) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":443
 *         raise ValueError("xyz_align1 and xyz_displ1 must contain the same number of frames")
 *     if not xyz_align2.shape[0] == xyz_displ2.shape[0]:
 *         raise ValueError("xyz_align2 and xyz_displ2 must contain the same number of frames")             # <<<<<<<<<<<<<<
 *     if frame >= xyz_align1.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 */
    __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__11, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 443; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_Raise(__pyx_t_5, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 443; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":442
 *     if not xyz_align1.shape[0] == xyz_displ1.shape[0]:
 *         raise ValueError("xyz_align1 and xyz_displ1 must contain the same number of frames")
 *     if not xyz_align2.shape[0] == xyz_displ2.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("xyz_align2 and xyz_displ2 must contain the same number of frames")
 *     if frame >= xyz_align1.shape[0]:
 */
  }

  /* "_rmsd.pyx":444
 *     if not xyz_align2.shape[0] == xyz_displ2.shape[0]:
 *         raise ValueError("xyz_align2 and xyz_displ2 must contain the same number of frames")
 *     if frame >= xyz_align1.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 *                          "only %d frames." % (frame, xyz_align1.shape[0]))
 */
  __pyx_t_1 = ((__pyx_v_frame >= (__pyx_v_xyz_align1.shape[0])) != 0);
  if (__pyx_t_1) {

    /* "_rmsd.pyx":446
 *     if frame >= xyz_align1.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 *                          "only %d frames." % (frame, xyz_align1.shape[0]))             # <<<<<<<<<<<<<<
 * 
 *     cdef float msd
 */
    __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_frame); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 446; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_3 = PyInt_FromSsize_t((__pyx_v_xyz_align1.shape[0])); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 446; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_4 = PyTuple_New(2); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 446; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_3);
    __pyx_t_5 = 0;
    __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyString_Format(__pyx_kp_s_Cannot_calculate_RMSD_of_frame_d_2, __pyx_t_4); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 446; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "_rmsd.pyx":445
 *         raise ValueError("xyz_align2 and xyz_displ2 must contain the same number of frames")
 *     if frame >= xyz_align1.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "             # <<<<<<<<<<<<<<
 *                          "only %d frames." % (frame, xyz_align1.shape[0]))
 * 
 */
    __pyx_t_4 = PyTuple_New(1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 445; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_3);
    __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_4, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 445; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    {__pyx_filename = __pyx_f[0]; __pyx_lineno = 445; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "_rmsd.pyx":444
 *     if not xyz_align2.shape[0] == xyz_displ2.shape[0]:
 *         raise ValueError("xyz_align2 and xyz_displ2 must contain the same number of frames")
 *     if frame >= xyz_align1.shape[0]:             # <<<<<<<<<<<<<<
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 *                          "only %d frames." % (frame, xyz_align1.shape[0]))
 */
  }

  /* "_rmsd.pyx":450
 *     cdef float msd
 *     cdef Py_ssize_t i
 *     cdef int n_frames = xyz_align2.shape[0]             # <<<<<<<<<<<<<<
 *     cdef int n_align_atoms_padded = xyz_align1.shape[1]
 *     cdef int n_displ_atoms_padded = xyz_displ1.shape[1]
 */
  __pyx_v_n_frames = (__pyx_v_xyz_align2.shape[0]);

  /* "_rmsd.pyx":451
 *     cdef Py_ssize_t i
 *     cdef int n_frames = xyz_align2.shape[0]
 *     cdef int n_align_atoms_padded = xyz_align1.shape[1]             # <<<<<<<<<<<<<<
 *     cdef int n_displ_atoms_padded = xyz_displ1.shape[1]
 * 
 */
  __pyx_v_n_align_atoms_padded = (__pyx_v_xyz_align1.shape[1]);

  /* "_rmsd.pyx":452
 *     cdef int n_frames = xyz_align2.shape[0]
 *     cdef int n_align_atoms_padded = xyz_align1.shape[1]
 *     cdef int n_displ_atoms_padded = xyz_displ1.shape[1]             # <<<<<<<<<<<<<<
 * 
 *     cdef float[:, :, ::1] rot = np.zeros((n_frames, 3, 3), dtype=np.float32)
 */
  __pyx_v_n_displ_atoms_padded = (__pyx_v_xyz_displ1.shape[1]);

  /* "_rmsd.pyx":454
 *     cdef int n_displ_atoms_padded = xyz_displ1.shape[1]
 * 
 *     cdef float[:, :, ::1] rot = np.zeros((n_frames, 3, 3), dtype=np.float32)             # <<<<<<<<<<<<<<
 *     cdef float[:] distances = np.zeros(n_frames, dtype=np.float32)
 * 
 */
  __pyx_t_3 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 454; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_zeros); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 454; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_n_frames); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 454; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_5 = PyTuple_New(3); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 454; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_GIVEREF(__pyx_t_3);
  PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_3);
  __Pyx_INCREF(__pyx_int_3);
  __Pyx_GIVEREF(__pyx_int_3);
  PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_int_3);
  __Pyx_INCREF(__pyx_int_3);
  __Pyx_GIVEREF(__pyx_int_3);
  PyTuple_SET_ITEM(__pyx_t_5, 2, __pyx_int_3);
  __pyx_t_3 = 0;
  __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 454; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_5);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_5);
  __pyx_t_5 = 0;
  __pyx_t_5 = PyDict_New(); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 454; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 454; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_float32); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 454; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  if (PyDict_SetItem(__pyx_t_5, __pyx_n_s_dtype, __pyx_t_7) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 454; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_4, __pyx_t_3, __pyx_t_5); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 454; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_8 = __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(__pyx_t_7);
  if (unlikely(!__pyx_t_8.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 454; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_v_rot = __pyx_t_8;
  __pyx_t_8.memview = NULL;
  __pyx_t_8.data = NULL;

  /* "_rmsd.pyx":455
 * 
 *     cdef float[:, :, ::1] rot = np.zeros((n_frames, 3, 3), dtype=np.float32)
 *     cdef float[:] distances = np.zeros(n_frames, dtype=np.float32)             # <<<<<<<<<<<<<<
 * 
 *     if parallel == True:
 */
  __pyx_t_7 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 455; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_zeros); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 455; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_n_frames); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 455; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 455; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_7);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_7);
  __pyx_t_7 = 0;
  __pyx_t_7 = PyDict_New(); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 455; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_4 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 455; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_float32); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 455; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  if (PyDict_SetItem(__pyx_t_7, __pyx_n_s_dtype, __pyx_t_6) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 455; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_3, __pyx_t_7); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 455; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_9 = __Pyx_PyObject_to_MemoryviewSlice_ds_float(__pyx_t_6);
  if (unlikely(!__pyx_t_9.memview)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 455; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_v_distances = __pyx_t_9;
  __pyx_t_9.memview = NULL;
  __pyx_t_9.data = NULL;

  /* "_rmsd.pyx":457
 *     cdef float[:] distances = np.zeros(n_frames, dtype=np.float32)
 * 
 *     if parallel == True:             # <<<<<<<<<<<<<<
 *         for i in prange(n_frames, nogil=True):
 *             msd_atom_major(n_atoms_align, n_align_atoms_padded, &xyz_align1[frame, 0, 0], &xyz_align2[i, 0, 0], g_align1[frame], g_align2[i], 1, &rot[i, 0, 0])
 */
  __pyx_t_6 = PyObject_RichCompare(((PyObject *)__pyx_v_parallel), Py_True, Py_EQ); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 457; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 457; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  if (__pyx_t_1) {

    /* "_rmsd.pyx":458
 * 
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):             # <<<<<<<<<<<<<<
 *             msd_atom_major(n_atoms_align, n_align_atoms_padded, &xyz_align1[frame, 0, 0], &xyz_align2[i, 0, 0], g_align1[frame], g_align2[i], 1, &rot[i, 0, 0])
 *             msd = rot_msd_atom_major(n_atoms_displ, n_displ_atoms_padded, &xyz_displ1[frame, 0, 0], &xyz_displ2[i, 0, 0], &rot[i, 0, 0])
 */
    {
        #ifdef WITH_THREAD
        PyThreadState *_save;
        Py_UNBLOCK_THREADS
        #endif
        /*try:*/ {
          __pyx_t_10 = __pyx_v_n_frames;
          if (1 == 0) abort();
          {
              #if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
                  #undef likely
                  #undef unlikely
                  #define likely(x)   (x)
                  #define unlikely(x) (x)
              #endif
              __pyx_t_12 = (__pyx_t_10 - 0) / 1;
              if (__pyx_t_12 > 0)
              {
                  #ifdef _OPENMP
                  #pragma omp parallel private(__pyx_t_30, __pyx_t_17, __pyx_t_28, __pyx_t_32, __pyx_t_24, __pyx_t_22, __pyx_t_23, __pyx_t_21, __pyx_t_31, __pyx_t_29, __pyx_t_16, __pyx_t_13, __pyx_t_20, __pyx_t_26, __pyx_t_15, __pyx_t_33, __pyx_t_18, __pyx_t_19, __pyx_t_14, __pyx_t_27, __pyx_t_25)
                  #endif /* _OPENMP */
                  {
                      #ifdef _OPENMP
                      #pragma omp for firstprivate(__pyx_v_i) lastprivate(__pyx_v_i) lastprivate(__pyx_v_msd)
                      #endif /* _OPENMP */
                      for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_12; __pyx_t_11++){
                          {
                              __pyx_v_i = 0 + 1 * __pyx_t_11;
                              /* Initialize private variables to invalid values */
                              __pyx_v_msd = ((float)__PYX_NAN());

                              /* "_rmsd.pyx":459
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):
 *             msd_atom_major(n_atoms_align, n_align_atoms_padded, &xyz_align1[frame, 0, 0], &xyz_align2[i, 0, 0], g_align1[frame], g_align2[i], 1, &rot[i, 0, 0])             # <<<<<<<<<<<<<<
 *             msd = rot_msd_atom_major(n_atoms_displ, n_displ_atoms_padded, &xyz_displ1[frame, 0, 0], &xyz_displ2[i, 0, 0], &rot[i, 0, 0])
 *             distances[i] = sqrtf(msd)
 */
                              __pyx_t_13 = __pyx_v_frame;
                              __pyx_t_14 = 0;
                              __pyx_t_15 = 0;
                              __pyx_t_16 = __pyx_v_i;
                              __pyx_t_17 = 0;
                              __pyx_t_18 = 0;
                              __pyx_t_19 = __pyx_v_frame;
                              __pyx_t_20 = __pyx_v_i;
                              __pyx_t_21 = __pyx_v_i;
                              __pyx_t_22 = 0;
                              __pyx_t_23 = 0;
                              msd_atom_major(__pyx_v_n_atoms_align, __pyx_v_n_align_atoms_padded, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_align1.data + __pyx_t_13 * __pyx_v_xyz_align1.strides[0]) ) + __pyx_t_14 * __pyx_v_xyz_align1.strides[1]) )) + __pyx_t_15)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_align2.data + __pyx_t_16 * __pyx_v_xyz_align2.strides[0]) ) + __pyx_t_17 * __pyx_v_xyz_align2.strides[1]) )) + __pyx_t_18)) )))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g_align1.data) + __pyx_t_19)) ))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g_align2.data) + __pyx_t_20)) ))), 1, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_rot.data + __pyx_t_21 * __pyx_v_rot.strides[0]) ) + __pyx_t_22 * __pyx_v_rot.strides[1]) )) + __pyx_t_23)) )))));

                              /* "_rmsd.pyx":460
 *         for i in prange(n_frames, nogil=True):
 *             msd_atom_major(n_atoms_align, n_align_atoms_padded, &xyz_align1[frame, 0, 0], &xyz_align2[i, 0, 0], g_align1[frame], g_align2[i], 1, &rot[i, 0, 0])
 *             msd = rot_msd_atom_major(n_atoms_displ, n_displ_atoms_padded, &xyz_displ1[frame, 0, 0], &xyz_displ2[i, 0, 0], &rot[i, 0, 0])             # <<<<<<<<<<<<<<
 *             distances[i] = sqrtf(msd)
 *     else:
 */
                              __pyx_t_24 = __pyx_v_frame;
                              __pyx_t_25 = 0;
                              __pyx_t_26 = 0;
                              __pyx_t_27 = __pyx_v_i;
                              __pyx_t_28 = 0;
                              __pyx_t_29 = 0;
                              __pyx_t_30 = __pyx_v_i;
                              __pyx_t_31 = 0;
                              __pyx_t_32 = 0;
                              __pyx_v_msd = rot_msd_atom_major(__pyx_v_n_atoms_displ, __pyx_v_n_displ_atoms_padded, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_displ1.data + __pyx_t_24 * __pyx_v_xyz_displ1.strides[0]) ) + __pyx_t_25 * __pyx_v_xyz_displ1.strides[1]) )) + __pyx_t_26)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_displ2.data + __pyx_t_27 * __pyx_v_xyz_displ2.strides[0]) ) + __pyx_t_28 * __pyx_v_xyz_displ2.strides[1]) )) + __pyx_t_29)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_rot.data + __pyx_t_30 * __pyx_v_rot.strides[0]) ) + __pyx_t_31 * __pyx_v_rot.strides[1]) )) + __pyx_t_32)) )))));

                              /* "_rmsd.pyx":461
 *             msd_atom_major(n_atoms_align, n_align_atoms_padded, &xyz_align1[frame, 0, 0], &xyz_align2[i, 0, 0], g_align1[frame], g_align2[i], 1, &rot[i, 0, 0])
 *             msd = rot_msd_atom_major(n_atoms_displ, n_displ_atoms_padded, &xyz_displ1[frame, 0, 0], &xyz_displ2[i, 0, 0], &rot[i, 0, 0])
 *             distances[i] = sqrtf(msd)             # <<<<<<<<<<<<<<
 *     else:
 *         for i in range(n_frames):
 */
                              __pyx_t_33 = __pyx_v_i;
                              *((float *) ( /* dim=0 */ (__pyx_v_distances.data + __pyx_t_33 * __pyx_v_distances.strides[0]) )) = sqrtf(__pyx_v_msd);
                          }
                      }
                  }
              }
          }
          #if ((defined(__APPLE__) || defined(__OSX__)) && (defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))))
              #undef likely
              #undef unlikely
              #define likely(x)   __builtin_expect(!!(x), 1)
              #define unlikely(x) __builtin_expect(!!(x), 0)
          #endif
        }

        /* "_rmsd.pyx":458
 * 
 *     if parallel == True:
 *         for i in prange(n_frames, nogil=True):             # <<<<<<<<<<<<<<
 *             msd_atom_major(n_atoms_align, n_align_atoms_padded, &xyz_align1[frame, 0, 0], &xyz_align2[i, 0, 0], g_align1[frame], g_align2[i], 1, &rot[i, 0, 0])
 *             msd = rot_msd_atom_major(n_atoms_displ, n_displ_atoms_padded, &xyz_displ1[frame, 0, 0], &xyz_displ2[i, 0, 0], &rot[i, 0, 0])
 */
        /*finally:*/ {
          /*normal exit:*/{
            #ifdef WITH_THREAD
            Py_BLOCK_THREADS
            #endif
            goto __pyx_L15;
          }
          __pyx_L15:;
        }
    }

    /* "_rmsd.pyx":457
 *     cdef float[:] distances = np.zeros(n_frames, dtype=np.float32)
 * 
 *     if parallel == True:             # <<<<<<<<<<<<<<
 *         for i in prange(n_frames, nogil=True):
 *             msd_atom_major(n_atoms_align, n_align_atoms_padded, &xyz_align1[frame, 0, 0], &xyz_align2[i, 0, 0], g_align1[frame], g_align2[i], 1, &rot[i, 0, 0])
 */
    goto __pyx_L12;
  }

  /* "_rmsd.pyx":463
 *             distances[i] = sqrtf(msd)
 *     else:
 *         for i in range(n_frames):             # <<<<<<<<<<<<<<
 *             msd_atom_major(n_atoms_align, n_align_atoms_padded, &xyz_align1[frame, 0, 0], &xyz_align2[i, 0, 0], g_align1[frame], g_align2[i], 1, &rot[i, 0, 0])
 *             msd = rot_msd_atom_major(n_atoms_displ, n_displ_atoms_padded, &xyz_displ1[frame, 0, 0], &xyz_displ2[i, 0, 0], &rot[i, 0, 0])
 */
  /*else*/ {
    __pyx_t_10 = __pyx_v_n_frames;
    for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_10; __pyx_t_12+=1) {
      __pyx_v_i = __pyx_t_12;

      /* "_rmsd.pyx":464
 *     else:
 *         for i in range(n_frames):
 *             msd_atom_major(n_atoms_align, n_align_atoms_padded, &xyz_align1[frame, 0, 0], &xyz_align2[i, 0, 0], g_align1[frame], g_align2[i], 1, &rot[i, 0, 0])             # <<<<<<<<<<<<<<
 *             msd = rot_msd_atom_major(n_atoms_displ, n_displ_atoms_padded, &xyz_displ1[frame, 0, 0], &xyz_displ2[i, 0, 0], &rot[i, 0, 0])
 *             distances[i] = sqrtf(msd)
 */
      __pyx_t_34 = __pyx_v_frame;
      __pyx_t_35 = 0;
      __pyx_t_36 = 0;
      __pyx_t_37 = __pyx_v_i;
      __pyx_t_38 = 0;
      __pyx_t_39 = 0;
      __pyx_t_40 = __pyx_v_frame;
      __pyx_t_41 = __pyx_v_i;
      __pyx_t_42 = __pyx_v_i;
      __pyx_t_43 = 0;
      __pyx_t_44 = 0;
      msd_atom_major(__pyx_v_n_atoms_align, __pyx_v_n_align_atoms_padded, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_align1.data + __pyx_t_34 * __pyx_v_xyz_align1.strides[0]) ) + __pyx_t_35 * __pyx_v_xyz_align1.strides[1]) )) + __pyx_t_36)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_align2.data + __pyx_t_37 * __pyx_v_xyz_align2.strides[0]) ) + __pyx_t_38 * __pyx_v_xyz_align2.strides[1]) )) + __pyx_t_39)) )))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g_align1.data) + __pyx_t_40)) ))), (*((float *) ( /* dim=0 */ ((char *) (((float *) __pyx_v_g_align2.data) + __pyx_t_41)) ))), 1, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_rot.data + __pyx_t_42 * __pyx_v_rot.strides[0]) ) + __pyx_t_43 * __pyx_v_rot.strides[1]) )) + __pyx_t_44)) )))));

      /* "_rmsd.pyx":465
 *         for i in range(n_frames):
 *             msd_atom_major(n_atoms_align, n_align_atoms_padded, &xyz_align1[frame, 0, 0], &xyz_align2[i, 0, 0], g_align1[frame], g_align2[i], 1, &rot[i, 0, 0])
 *             msd = rot_msd_atom_major(n_atoms_displ, n_displ_atoms_padded, &xyz_displ1[frame, 0, 0], &xyz_displ2[i, 0, 0], &rot[i, 0, 0])             # <<<<<<<<<<<<<<
 *             distances[i] = sqrtf(msd)
 * 
 */
      __pyx_t_45 = __pyx_v_frame;
      __pyx_t_46 = 0;
      __pyx_t_47 = 0;
      __pyx_t_48 = __pyx_v_i;
      __pyx_t_49 = 0;
      __pyx_t_50 = 0;
      __pyx_t_51 = __pyx_v_i;
      __pyx_t_52 = 0;
      __pyx_t_53 = 0;
      __pyx_v_msd = rot_msd_atom_major(__pyx_v_n_atoms_displ, __pyx_v_n_displ_atoms_padded, (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_displ1.data + __pyx_t_45 * __pyx_v_xyz_displ1.strides[0]) ) + __pyx_t_46 * __pyx_v_xyz_displ1.strides[1]) )) + __pyx_t_47)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_xyz_displ2.data + __pyx_t_48 * __pyx_v_xyz_displ2.strides[0]) ) + __pyx_t_49 * __pyx_v_xyz_displ2.strides[1]) )) + __pyx_t_50)) )))), (&(*((float *) ( /* dim=2 */ ((char *) (((float *) ( /* dim=1 */ (( /* dim=0 */ (__pyx_v_rot.data + __pyx_t_51 * __pyx_v_rot.strides[0]) ) + __pyx_t_52 * __pyx_v_rot.strides[1]) )) + __pyx_t_53)) )))));

      /* "_rmsd.pyx":466
 *             msd_atom_major(n_atoms_align, n_align_atoms_padded, &xyz_align1[frame, 0, 0], &xyz_align2[i, 0, 0], g_align1[frame], g_align2[i], 1, &rot[i, 0, 0])
 *             msd = rot_msd_atom_major(n_atoms_displ, n_displ_atoms_padded, &xyz_displ1[frame, 0, 0], &xyz_displ2[i, 0, 0], &rot[i, 0, 0])
 *             distances[i] = sqrtf(msd)             # <<<<<<<<<<<<<<
 * 
 *     return np.array(distances, copy=False), np.array(rot, copy=False)
 */
      __pyx_t_54 = __pyx_v_i;
      *((float *) ( /* dim=0 */ (__pyx_v_distances.data + __pyx_t_54 * __pyx_v_distances.strides[0]) )) = sqrtf(__pyx_v_msd);
    }
  }
  __pyx_L12:;

  /* "_rmsd.pyx":468
 *             distances[i] = sqrtf(msd)
 * 
 *     return np.array(distances, copy=False), np.array(rot, copy=False)             # <<<<<<<<<<<<<<
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_array); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_6 = __pyx_memoryview_fromslice(__pyx_v_distances, 1, (PyObject *(*)(char *)) __pyx_memview_get_float, (int (*)(char *, PyObject *)) __pyx_memview_set_float, 0);; if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_6);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_6);
  __pyx_t_6 = 0;
  __pyx_t_6 = PyDict_New(); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_copy, Py_False) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_5 = __Pyx_PyObject_Call(__pyx_t_7, __pyx_t_3, __pyx_t_6); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_6 = __Pyx_GetModuleGlobalName(__pyx_n_s_np); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_array); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_6 = __pyx_memoryview_fromslice(__pyx_v_rot, 3, (PyObject *(*)(char *)) __pyx_memview_get_float, (int (*)(char *, PyObject *)) __pyx_memview_set_float, 0);; if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_7 = PyTuple_New(1); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_GIVEREF(__pyx_t_6);
  PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_t_6);
  __pyx_t_6 = 0;
  __pyx_t_6 = PyDict_New(); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  if (PyDict_SetItem(__pyx_t_6, __pyx_n_s_copy, Py_False) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_3, __pyx_t_7, __pyx_t_6); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_6 = PyTuple_New(2); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_GIVEREF(__pyx_t_5);
  PyTuple_SET_ITEM(__pyx_t_6, 0, __pyx_t_5);
  __Pyx_GIVEREF(__pyx_t_4);
  PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_t_4);
  __pyx_t_5 = 0;
  __pyx_t_4 = 0;
  __pyx_r = __pyx_t_6;
  __pyx_t_6 = 0;
  goto __pyx_L0;

  /* "_rmsd.pyx":388
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleAlignDisplaceRMSDs_atom_major(float[:, :, ::1] xyz_align1 not None,             # <<<<<<<<<<<<<<
 *     float[:, :, ::1] xyz_align2 not None, float[::1] g_align1 not None,
 *     float[::1] g_align2 not None, float[:, :, ::1] xyz_displ1 not None,
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __PYX_XDEC_MEMVIEW(&__pyx_t_8, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_t_9, 1);
  __Pyx_AddTraceback("_rmsd.getMultipleAlignDisplaceRMSDs_atom_major", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __PYX_XDEC_MEMVIEW(&__pyx_v_rot, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_distances, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_xyz_align1, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_xyz_align2, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_g_align1, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_g_align2, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_xyz_displ1, 1);
  __PYX_XDEC_MEMVIEW(&__pyx_v_xyz_displ2, 1);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":118
 *         cdef bint dtype_is_object
 * 
 *     def __cinit__(array self, tuple shape, Py_ssize_t itemsize, format not None,             # <<<<<<<<<<<<<<
 *                   mode="c", bint allocate_buffer=True):
 * 
 */

/* Python wrapper */
static int __pyx_array___cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static int __pyx_array___cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_shape = 0;
  Py_ssize_t __pyx_v_itemsize;
  PyObject *__pyx_v_format = 0;
  PyObject *__pyx_v_mode = 0;
  int __pyx_v_allocate_buffer;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_shape,&__pyx_n_s_itemsize,&__pyx_n_s_format,&__pyx_n_s_mode,&__pyx_n_s_allocate_buffer,0};
    PyObject* values[5] = {0,0,0,0,0};
    values[3] = ((PyObject *)__pyx_n_s_c);
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_shape)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        case  1:
        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_itemsize)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 3, 5, 1); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 118; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  2:
        if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_format)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 3, 5, 2); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 118; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  3:
        if (kw_args > 0) {
          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mode);
          if (value) { values[3] = value; kw_args--; }
        }
        case  4:
        if (kw_args > 0) {
          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_allocate_buffer);
          if (value) { values[4] = value; kw_args--; }
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__cinit__") < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 118; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
      }
    } else {
      switch (PyTuple_GET_SIZE(__pyx_args)) {
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        break;
        default: goto __pyx_L5_argtuple_error;
      }
    }
    __pyx_v_shape = ((PyObject*)values[0]);
    __pyx_v_itemsize = __Pyx_PyIndex_AsSsize_t(values[1]); if (unlikely((__pyx_v_itemsize == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 118; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    __pyx_v_format = values[2];
    __pyx_v_mode = values[3];
    if (values[4]) {
      __pyx_v_allocate_buffer = __Pyx_PyObject_IsTrue(values[4]); if (unlikely((__pyx_v_allocate_buffer == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 119; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    } else {

      /* "View.MemoryView":119
 * 
 *     def __cinit__(array self, tuple shape, Py_ssize_t itemsize, format not None,
 *                   mode="c", bint allocate_buffer=True):             # <<<<<<<<<<<<<<
 * 
 *         cdef int idx
 */
      __pyx_v_allocate_buffer = ((int)1);
    }
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 3, 5, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 118; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
  __pyx_L3_error:;
  __Pyx_AddTraceback("View.MemoryView.array.__cinit__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return -1;
  __pyx_L4_argument_unpacking_done:;
  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_shape), (&PyTuple_Type), 1, "shape", 1))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 118; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  if (unlikely(((PyObject *)__pyx_v_format) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "format"); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 118; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  __pyx_r = __pyx_array___pyx_pf_15View_dot_MemoryView_5array___cinit__(((struct __pyx_array_obj *)__pyx_v_self), __pyx_v_shape, __pyx_v_itemsize, __pyx_v_format, __pyx_v_mode, __pyx_v_allocate_buffer);

  /* "View.MemoryView":118
 *         cdef bint dtype_is_object
 * 
 *     def __cinit__(array self, tuple shape, Py_ssize_t itemsize, format not None,             # <<<<<<<<<<<<<<
 *                   mode="c", bint allocate_buffer=True):
 * 
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array___cinit__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_shape, Py_ssize_t __pyx_v_itemsize, PyObject *__pyx_v_format, PyObject *__pyx_v_mode, int __pyx_v_allocate_buffer) {
  int __pyx_v_idx;
  Py_ssize_t __pyx_v_i;
  Py_ssize_t __pyx_v_dim;
  PyObject **__pyx_v_p;
  char __pyx_v_order;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  Py_ssize_t __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  char *__pyx_t_6;
  int __pyx_t_7;
  Py_ssize_t __pyx_t_8;
  PyObject *__pyx_t_9 = NULL;
  PyObject *__pyx_t_10 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__cinit__", 0);
  __Pyx_INCREF(__pyx_v_format);

  /* "View.MemoryView":125
 *         cdef PyObject **p
 * 
 *         self.ndim = <int> len(shape)             # <<<<<<<<<<<<<<
 *         self.itemsize = itemsize
 * 
 */
  if (unlikely(__pyx_v_shape == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
    {__pyx_filename = __pyx_f[1]; __pyx_lineno = 125; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  __pyx_t_1 = PyTuple_GET_SIZE(__pyx_v_shape); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 125; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_v_self->ndim = ((int)__pyx_t_1);

  /* "View.MemoryView":126
 * 
 *         self.ndim = <int> len(shape)
 *         self.itemsize = itemsize             # <<<<<<<<<<<<<<
 * 
 *         if not self.ndim:
 */
  __pyx_v_self->itemsize = __pyx_v_itemsize;

  /* "View.MemoryView":128
 *         self.itemsize = itemsize
 * 
 *         if not self.ndim:             # <<<<<<<<<<<<<<
 *             raise ValueError("Empty shape tuple for cython.array")
 * 
 */
  __pyx_t_2 = ((!(__pyx_v_self->ndim != 0)) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":129
 * 
 *         if not self.ndim:
 *             raise ValueError("Empty shape tuple for cython.array")             # <<<<<<<<<<<<<<
 * 
 *         if itemsize <= 0:
 */
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__12, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 129; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    {__pyx_filename = __pyx_f[1]; __pyx_lineno = 129; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":128
 *         self.itemsize = itemsize
 * 
 *         if not self.ndim:             # <<<<<<<<<<<<<<
 *             raise ValueError("Empty shape tuple for cython.array")
 * 
 */
  }

  /* "View.MemoryView":131
 *             raise ValueError("Empty shape tuple for cython.array")
 * 
 *         if itemsize <= 0:             # <<<<<<<<<<<<<<
 *             raise ValueError("itemsize <= 0 for cython.array")
 * 
 */
  __pyx_t_2 = ((__pyx_v_itemsize <= 0) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":132
 * 
 *         if itemsize <= 0:
 *             raise ValueError("itemsize <= 0 for cython.array")             # <<<<<<<<<<<<<<
 * 
 *         if not isinstance(format, bytes):
 */
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__13, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    {__pyx_filename = __pyx_f[1]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":131
 *             raise ValueError("Empty shape tuple for cython.array")
 * 
 *         if itemsize <= 0:             # <<<<<<<<<<<<<<
 *             raise ValueError("itemsize <= 0 for cython.array")
 * 
 */
  }

  /* "View.MemoryView":134
 *             raise ValueError("itemsize <= 0 for cython.array")
 * 
 *         if not isinstance(format, bytes):             # <<<<<<<<<<<<<<
 *             format = format.encode('ASCII')
 *         self._format = format  # keep a reference to the byte string
 */
  __pyx_t_2 = PyBytes_Check(__pyx_v_format); 
  __pyx_t_4 = ((!(__pyx_t_2 != 0)) != 0);
  if (__pyx_t_4) {

    /* "View.MemoryView":135
 * 
 *         if not isinstance(format, bytes):
 *             format = format.encode('ASCII')             # <<<<<<<<<<<<<<
 *         self._format = format  # keep a reference to the byte string
 *         self.format = self._format
 */
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_format, __pyx_n_s_encode); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 135; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_5 = __Pyx_PyObject_Call(__pyx_t_3, __pyx_tuple__14, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 135; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __Pyx_DECREF_SET(__pyx_v_format, __pyx_t_5);
    __pyx_t_5 = 0;

    /* "View.MemoryView":134
 *             raise ValueError("itemsize <= 0 for cython.array")
 * 
 *         if not isinstance(format, bytes):             # <<<<<<<<<<<<<<
 *             format = format.encode('ASCII')
 *         self._format = format  # keep a reference to the byte string
 */
  }

  /* "View.MemoryView":136
 *         if not isinstance(format, bytes):
 *             format = format.encode('ASCII')
 *         self._format = format  # keep a reference to the byte string             # <<<<<<<<<<<<<<
 *         self.format = self._format
 * 
 */
  if (!(likely(PyBytes_CheckExact(__pyx_v_format))||((__pyx_v_format) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "bytes", Py_TYPE(__pyx_v_format)->tp_name), 0))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 136; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_5 = __pyx_v_format;
  __Pyx_INCREF(__pyx_t_5);
  __Pyx_GIVEREF(__pyx_t_5);
  __Pyx_GOTREF(__pyx_v_self->_format);
  __Pyx_DECREF(__pyx_v_self->_format);
  __pyx_v_self->_format = ((PyObject*)__pyx_t_5);
  __pyx_t_5 = 0;

  /* "View.MemoryView":137
 *             format = format.encode('ASCII')
 *         self._format = format  # keep a reference to the byte string
 *         self.format = self._format             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_6 = __Pyx_PyObject_AsString(__pyx_v_self->_format); if (unlikely((!__pyx_t_6) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 137; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_v_self->format = __pyx_t_6;

  /* "View.MemoryView":140
 * 
 * 
 *         self._shape = <Py_ssize_t *> PyMem_Malloc(sizeof(Py_ssize_t)*self.ndim*2)             # <<<<<<<<<<<<<<
 *         self._strides = self._shape + self.ndim
 * 
 */
  __pyx_v_self->_shape = ((Py_ssize_t *)PyMem_Malloc((((sizeof(Py_ssize_t)) * __pyx_v_self->ndim) * 2)));

  /* "View.MemoryView":141
 * 
 *         self._shape = <Py_ssize_t *> PyMem_Malloc(sizeof(Py_ssize_t)*self.ndim*2)
 *         self._strides = self._shape + self.ndim             # <<<<<<<<<<<<<<
 * 
 *         if not self._shape:
 */
  __pyx_v_self->_strides = (__pyx_v_self->_shape + __pyx_v_self->ndim);

  /* "View.MemoryView":143
 *         self._strides = self._shape + self.ndim
 * 
 *         if not self._shape:             # <<<<<<<<<<<<<<
 *             raise MemoryError("unable to allocate shape and strides.")
 * 
 */
  __pyx_t_4 = ((!(__pyx_v_self->_shape != 0)) != 0);
  if (__pyx_t_4) {

    /* "View.MemoryView":144
 * 
 *         if not self._shape:
 *             raise MemoryError("unable to allocate shape and strides.")             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_MemoryError, __pyx_tuple__15, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 144; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_Raise(__pyx_t_5, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    {__pyx_filename = __pyx_f[1]; __pyx_lineno = 144; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":143
 *         self._strides = self._shape + self.ndim
 * 
 *         if not self._shape:             # <<<<<<<<<<<<<<
 *             raise MemoryError("unable to allocate shape and strides.")
 * 
 */
  }

  /* "View.MemoryView":147
 * 
 * 
 *         for idx, dim in enumerate(shape):             # <<<<<<<<<<<<<<
 *             if dim <= 0:
 *                 raise ValueError("Invalid shape in axis %d: %d." % (idx, dim))
 */
  __pyx_t_7 = 0;
  __pyx_t_5 = __pyx_v_shape; __Pyx_INCREF(__pyx_t_5); __pyx_t_1 = 0;
  for (;;) {
    if (__pyx_t_1 >= PyTuple_GET_SIZE(__pyx_t_5)) break;
    #if CYTHON_COMPILING_IN_CPYTHON
    __pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_5, __pyx_t_1); __Pyx_INCREF(__pyx_t_3); __pyx_t_1++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 147; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    #else
    __pyx_t_3 = PySequence_ITEM(__pyx_t_5, __pyx_t_1); __pyx_t_1++; if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 147; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    #endif
    __pyx_t_8 = __Pyx_PyIndex_AsSsize_t(__pyx_t_3); if (unlikely((__pyx_t_8 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 147; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_v_dim = __pyx_t_8;
    __pyx_v_idx = __pyx_t_7;
    __pyx_t_7 = (__pyx_t_7 + 1);

    /* "View.MemoryView":148
 * 
 *         for idx, dim in enumerate(shape):
 *             if dim <= 0:             # <<<<<<<<<<<<<<
 *                 raise ValueError("Invalid shape in axis %d: %d." % (idx, dim))
 *             self._shape[idx] = dim
 */
    __pyx_t_4 = ((__pyx_v_dim <= 0) != 0);
    if (__pyx_t_4) {

      /* "View.MemoryView":149
 *         for idx, dim in enumerate(shape):
 *             if dim <= 0:
 *                 raise ValueError("Invalid shape in axis %d: %d." % (idx, dim))             # <<<<<<<<<<<<<<
 *             self._shape[idx] = dim
 * 
 */
      __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_idx); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_3);
      __pyx_t_9 = PyInt_FromSsize_t(__pyx_v_dim); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_10 = PyTuple_New(2); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_10);
      __Pyx_GIVEREF(__pyx_t_3);
      PyTuple_SET_ITEM(__pyx_t_10, 0, __pyx_t_3);
      __Pyx_GIVEREF(__pyx_t_9);
      PyTuple_SET_ITEM(__pyx_t_10, 1, __pyx_t_9);
      __pyx_t_3 = 0;
      __pyx_t_9 = 0;
      __pyx_t_9 = __Pyx_PyString_Format(__pyx_kp_s_Invalid_shape_in_axis_d_d, __pyx_t_10); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_9);
      __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
      __pyx_t_10 = PyTuple_New(1); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_10);
      __Pyx_GIVEREF(__pyx_t_9);
      PyTuple_SET_ITEM(__pyx_t_10, 0, __pyx_t_9);
      __pyx_t_9 = 0;
      __pyx_t_9 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_10, NULL); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_9);
      __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
      __Pyx_Raise(__pyx_t_9, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      {__pyx_filename = __pyx_f[1]; __pyx_lineno = 149; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "View.MemoryView":148
 * 
 *         for idx, dim in enumerate(shape):
 *             if dim <= 0:             # <<<<<<<<<<<<<<
 *                 raise ValueError("Invalid shape in axis %d: %d." % (idx, dim))
 *             self._shape[idx] = dim
 */
    }

    /* "View.MemoryView":150
 *             if dim <= 0:
 *                 raise ValueError("Invalid shape in axis %d: %d." % (idx, dim))
 *             self._shape[idx] = dim             # <<<<<<<<<<<<<<
 * 
 *         cdef char order
 */
    (__pyx_v_self->_shape[__pyx_v_idx]) = __pyx_v_dim;

    /* "View.MemoryView":147
 * 
 * 
 *         for idx, dim in enumerate(shape):             # <<<<<<<<<<<<<<
 *             if dim <= 0:
 *                 raise ValueError("Invalid shape in axis %d: %d." % (idx, dim))
 */
  }
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;

  /* "View.MemoryView":153
 * 
 *         cdef char order
 *         if mode == 'fortran':             # <<<<<<<<<<<<<<
 *             order = b'F'
 *             self.mode = u'fortran'
 */
  __pyx_t_4 = (__Pyx_PyString_Equals(__pyx_v_mode, __pyx_n_s_fortran, Py_EQ)); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 153; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  if (__pyx_t_4) {

    /* "View.MemoryView":154
 *         cdef char order
 *         if mode == 'fortran':
 *             order = b'F'             # <<<<<<<<<<<<<<
 *             self.mode = u'fortran'
 *         elif mode == 'c':
 */
    __pyx_v_order = 'F';

    /* "View.MemoryView":155
 *         if mode == 'fortran':
 *             order = b'F'
 *             self.mode = u'fortran'             # <<<<<<<<<<<<<<
 *         elif mode == 'c':
 *             order = b'C'
 */
    __Pyx_INCREF(__pyx_n_u_fortran);
    __Pyx_GIVEREF(__pyx_n_u_fortran);
    __Pyx_GOTREF(__pyx_v_self->mode);
    __Pyx_DECREF(__pyx_v_self->mode);
    __pyx_v_self->mode = __pyx_n_u_fortran;

    /* "View.MemoryView":153
 * 
 *         cdef char order
 *         if mode == 'fortran':             # <<<<<<<<<<<<<<
 *             order = b'F'
 *             self.mode = u'fortran'
 */
    goto __pyx_L10;
  }

  /* "View.MemoryView":156
 *             order = b'F'
 *             self.mode = u'fortran'
 *         elif mode == 'c':             # <<<<<<<<<<<<<<
 *             order = b'C'
 *             self.mode = u'c'
 */
  __pyx_t_4 = (__Pyx_PyString_Equals(__pyx_v_mode, __pyx_n_s_c, Py_EQ)); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 156; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  if (__pyx_t_4) {

    /* "View.MemoryView":157
 *             self.mode = u'fortran'
 *         elif mode == 'c':
 *             order = b'C'             # <<<<<<<<<<<<<<
 *             self.mode = u'c'
 *         else:
 */
    __pyx_v_order = 'C';

    /* "View.MemoryView":158
 *         elif mode == 'c':
 *             order = b'C'
 *             self.mode = u'c'             # <<<<<<<<<<<<<<
 *         else:
 *             raise ValueError("Invalid mode, expected 'c' or 'fortran', got %s" % mode)
 */
    __Pyx_INCREF(__pyx_n_u_c);
    __Pyx_GIVEREF(__pyx_n_u_c);
    __Pyx_GOTREF(__pyx_v_self->mode);
    __Pyx_DECREF(__pyx_v_self->mode);
    __pyx_v_self->mode = __pyx_n_u_c;

    /* "View.MemoryView":156
 *             order = b'F'
 *             self.mode = u'fortran'
 *         elif mode == 'c':             # <<<<<<<<<<<<<<
 *             order = b'C'
 *             self.mode = u'c'
 */
    goto __pyx_L10;
  }

  /* "View.MemoryView":160
 *             self.mode = u'c'
 *         else:
 *             raise ValueError("Invalid mode, expected 'c' or 'fortran', got %s" % mode)             # <<<<<<<<<<<<<<
 * 
 *         self.len = fill_contig_strides_array(self._shape, self._strides,
 */
  /*else*/ {
    __pyx_t_5 = __Pyx_PyString_Format(__pyx_kp_s_Invalid_mode_expected_c_or_fortr, __pyx_v_mode); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 160; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_9 = PyTuple_New(1); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 160; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_9);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_9, 0, __pyx_t_5);
    __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_9, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 160; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
    __Pyx_Raise(__pyx_t_5, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    {__pyx_filename = __pyx_f[1]; __pyx_lineno = 160; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  __pyx_L10:;

  /* "View.MemoryView":162
 *             raise ValueError("Invalid mode, expected 'c' or 'fortran', got %s" % mode)
 * 
 *         self.len = fill_contig_strides_array(self._shape, self._strides,             # <<<<<<<<<<<<<<
 *                                              itemsize, self.ndim, order)
 * 
 */
  __pyx_v_self->len = __pyx_fill_contig_strides_array(__pyx_v_self->_shape, __pyx_v_self->_strides, __pyx_v_itemsize, __pyx_v_self->ndim, __pyx_v_order);

  /* "View.MemoryView":165
 *                                              itemsize, self.ndim, order)
 * 
 *         self.free_data = allocate_buffer             # <<<<<<<<<<<<<<
 *         self.dtype_is_object = format == b'O'
 *         if allocate_buffer:
 */
  __pyx_v_self->free_data = __pyx_v_allocate_buffer;

  /* "View.MemoryView":166
 * 
 *         self.free_data = allocate_buffer
 *         self.dtype_is_object = format == b'O'             # <<<<<<<<<<<<<<
 *         if allocate_buffer:
 * 
 */
  __pyx_t_5 = PyObject_RichCompare(__pyx_v_format, __pyx_n_b_O, Py_EQ); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_v_self->dtype_is_object = __pyx_t_4;

  /* "View.MemoryView":167
 *         self.free_data = allocate_buffer
 *         self.dtype_is_object = format == b'O'
 *         if allocate_buffer:             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_4 = (__pyx_v_allocate_buffer != 0);
  if (__pyx_t_4) {

    /* "View.MemoryView":170
 * 
 * 
 *             self.data = <char *>malloc(self.len)             # <<<<<<<<<<<<<<
 *             if not self.data:
 *                 raise MemoryError("unable to allocate array data.")
 */
    __pyx_v_self->data = ((char *)malloc(__pyx_v_self->len));

    /* "View.MemoryView":171
 * 
 *             self.data = <char *>malloc(self.len)
 *             if not self.data:             # <<<<<<<<<<<<<<
 *                 raise MemoryError("unable to allocate array data.")
 * 
 */
    __pyx_t_4 = ((!(__pyx_v_self->data != 0)) != 0);
    if (__pyx_t_4) {

      /* "View.MemoryView":172
 *             self.data = <char *>malloc(self.len)
 *             if not self.data:
 *                 raise MemoryError("unable to allocate array data.")             # <<<<<<<<<<<<<<
 * 
 *             if self.dtype_is_object:
 */
      __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_MemoryError, __pyx_tuple__16, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_Raise(__pyx_t_5, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      {__pyx_filename = __pyx_f[1]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "View.MemoryView":171
 * 
 *             self.data = <char *>malloc(self.len)
 *             if not self.data:             # <<<<<<<<<<<<<<
 *                 raise MemoryError("unable to allocate array data.")
 * 
 */
    }

    /* "View.MemoryView":174
 *                 raise MemoryError("unable to allocate array data.")
 * 
 *             if self.dtype_is_object:             # <<<<<<<<<<<<<<
 *                 p = <PyObject **> self.data
 *                 for i in range(self.len / itemsize):
 */
    __pyx_t_4 = (__pyx_v_self->dtype_is_object != 0);
    if (__pyx_t_4) {

      /* "View.MemoryView":175
 * 
 *             if self.dtype_is_object:
 *                 p = <PyObject **> self.data             # <<<<<<<<<<<<<<
 *                 for i in range(self.len / itemsize):
 *                     p[i] = Py_None
 */
      __pyx_v_p = ((PyObject **)__pyx_v_self->data);

      /* "View.MemoryView":176
 *             if self.dtype_is_object:
 *                 p = <PyObject **> self.data
 *                 for i in range(self.len / itemsize):             # <<<<<<<<<<<<<<
 *                     p[i] = Py_None
 *                     Py_INCREF(Py_None)
 */
      if (unlikely(__pyx_v_itemsize == 0)) {
        PyErr_SetString(PyExc_ZeroDivisionError, "integer division or modulo by zero");
        {__pyx_filename = __pyx_f[1]; __pyx_lineno = 176; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      }
      else if (sizeof(Py_ssize_t) == sizeof(long) && (!(((Py_ssize_t)-1) > 0)) && unlikely(__pyx_v_itemsize == (Py_ssize_t)-1)  && unlikely(UNARY_NEG_WOULD_OVERFLOW(__pyx_v_self->len))) {
        PyErr_SetString(PyExc_OverflowError, "value too large to perform division");
        {__pyx_filename = __pyx_f[1]; __pyx_lineno = 176; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      }
      __pyx_t_1 = __Pyx_div_Py_ssize_t(__pyx_v_self->len, __pyx_v_itemsize);
      for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_1; __pyx_t_8+=1) {
        __pyx_v_i = __pyx_t_8;

        /* "View.MemoryView":177
 *                 p = <PyObject **> self.data
 *                 for i in range(self.len / itemsize):
 *                     p[i] = Py_None             # <<<<<<<<<<<<<<
 *                     Py_INCREF(Py_None)
 * 
 */
        (__pyx_v_p[__pyx_v_i]) = Py_None;

        /* "View.MemoryView":178
 *                 for i in range(self.len / itemsize):
 *                     p[i] = Py_None
 *                     Py_INCREF(Py_None)             # <<<<<<<<<<<<<<
 * 
 *     @cname('getbuffer')
 */
        Py_INCREF(Py_None);
      }

      /* "View.MemoryView":174
 *                 raise MemoryError("unable to allocate array data.")
 * 
 *             if self.dtype_is_object:             # <<<<<<<<<<<<<<
 *                 p = <PyObject **> self.data
 *                 for i in range(self.len / itemsize):
 */
    }

    /* "View.MemoryView":167
 *         self.free_data = allocate_buffer
 *         self.dtype_is_object = format == b'O'
 *         if allocate_buffer:             # <<<<<<<<<<<<<<
 * 
 * 
 */
  }

  /* "View.MemoryView":118
 *         cdef bint dtype_is_object
 * 
 *     def __cinit__(array self, tuple shape, Py_ssize_t itemsize, format not None,             # <<<<<<<<<<<<<<
 *                   mode="c", bint allocate_buffer=True):
 * 
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_XDECREF(__pyx_t_10);
  __Pyx_AddTraceback("View.MemoryView.array.__cinit__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_format);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":181
 * 
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):             # <<<<<<<<<<<<<<
 *         cdef int bufmode = -1
 *         if self.mode == u"c":
 */

/* Python wrapper */
static CYTHON_UNUSED int __pyx_array_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
static CYTHON_UNUSED int __pyx_array_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getbuffer__ (wrapper)", 0);
  __pyx_r = __pyx_array___pyx_pf_15View_dot_MemoryView_5array_2__getbuffer__(((struct __pyx_array_obj *)__pyx_v_self), ((Py_buffer *)__pyx_v_info), ((int)__pyx_v_flags));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_2__getbuffer__(struct __pyx_array_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) {
  int __pyx_v_bufmode;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  char *__pyx_t_4;
  Py_ssize_t __pyx_t_5;
  int __pyx_t_6;
  Py_ssize_t *__pyx_t_7;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__getbuffer__", 0);
  if (__pyx_v_info != NULL) {
    __pyx_v_info->obj = Py_None; __Pyx_INCREF(Py_None);
    __Pyx_GIVEREF(__pyx_v_info->obj);
  }

  /* "View.MemoryView":182
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         cdef int bufmode = -1             # <<<<<<<<<<<<<<
 *         if self.mode == u"c":
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 */
  __pyx_v_bufmode = -1;

  /* "View.MemoryView":183
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         cdef int bufmode = -1
 *         if self.mode == u"c":             # <<<<<<<<<<<<<<
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         elif self.mode == u"fortran":
 */
  __pyx_t_1 = (__Pyx_PyUnicode_Equals(__pyx_v_self->mode, __pyx_n_u_c, Py_EQ)); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 183; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":184
 *         cdef int bufmode = -1
 *         if self.mode == u"c":
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS             # <<<<<<<<<<<<<<
 *         elif self.mode == u"fortran":
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 */
    __pyx_v_bufmode = (PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS);

    /* "View.MemoryView":183
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         cdef int bufmode = -1
 *         if self.mode == u"c":             # <<<<<<<<<<<<<<
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         elif self.mode == u"fortran":
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":185
 *         if self.mode == u"c":
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         elif self.mode == u"fortran":             # <<<<<<<<<<<<<<
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         if not (flags & bufmode):
 */
  __pyx_t_2 = (__Pyx_PyUnicode_Equals(__pyx_v_self->mode, __pyx_n_u_fortran, Py_EQ)); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 185; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_t_1 = (__pyx_t_2 != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":186
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         elif self.mode == u"fortran":
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS             # <<<<<<<<<<<<<<
 *         if not (flags & bufmode):
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")
 */
    __pyx_v_bufmode = (PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS);

    /* "View.MemoryView":185
 *         if self.mode == u"c":
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         elif self.mode == u"fortran":             # <<<<<<<<<<<<<<
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         if not (flags & bufmode):
 */
  }
  __pyx_L3:;

  /* "View.MemoryView":187
 *         elif self.mode == u"fortran":
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         if not (flags & bufmode):             # <<<<<<<<<<<<<<
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")
 *         info.buf = self.data
 */
  __pyx_t_1 = ((!((__pyx_v_flags & __pyx_v_bufmode) != 0)) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":188
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         if not (flags & bufmode):
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")             # <<<<<<<<<<<<<<
 *         info.buf = self.data
 *         info.len = self.len
 */
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__17, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 188; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    {__pyx_filename = __pyx_f[1]; __pyx_lineno = 188; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":187
 *         elif self.mode == u"fortran":
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         if not (flags & bufmode):             # <<<<<<<<<<<<<<
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")
 *         info.buf = self.data
 */
  }

  /* "View.MemoryView":189
 *         if not (flags & bufmode):
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")
 *         info.buf = self.data             # <<<<<<<<<<<<<<
 *         info.len = self.len
 *         info.ndim = self.ndim
 */
  __pyx_t_4 = __pyx_v_self->data;
  __pyx_v_info->buf = __pyx_t_4;

  /* "View.MemoryView":190
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")
 *         info.buf = self.data
 *         info.len = self.len             # <<<<<<<<<<<<<<
 *         info.ndim = self.ndim
 *         info.shape = self._shape
 */
  __pyx_t_5 = __pyx_v_self->len;
  __pyx_v_info->len = __pyx_t_5;

  /* "View.MemoryView":191
 *         info.buf = self.data
 *         info.len = self.len
 *         info.ndim = self.ndim             # <<<<<<<<<<<<<<
 *         info.shape = self._shape
 *         info.strides = self._strides
 */
  __pyx_t_6 = __pyx_v_self->ndim;
  __pyx_v_info->ndim = __pyx_t_6;

  /* "View.MemoryView":192
 *         info.len = self.len
 *         info.ndim = self.ndim
 *         info.shape = self._shape             # <<<<<<<<<<<<<<
 *         info.strides = self._strides
 *         info.suboffsets = NULL
 */
  __pyx_t_7 = __pyx_v_self->_shape;
  __pyx_v_info->shape = __pyx_t_7;

  /* "View.MemoryView":193
 *         info.ndim = self.ndim
 *         info.shape = self._shape
 *         info.strides = self._strides             # <<<<<<<<<<<<<<
 *         info.suboffsets = NULL
 *         info.itemsize = self.itemsize
 */
  __pyx_t_7 = __pyx_v_self->_strides;
  __pyx_v_info->strides = __pyx_t_7;

  /* "View.MemoryView":194
 *         info.shape = self._shape
 *         info.strides = self._strides
 *         info.suboffsets = NULL             # <<<<<<<<<<<<<<
 *         info.itemsize = self.itemsize
 *         info.readonly = 0
 */
  __pyx_v_info->suboffsets = NULL;

  /* "View.MemoryView":195
 *         info.strides = self._strides
 *         info.suboffsets = NULL
 *         info.itemsize = self.itemsize             # <<<<<<<<<<<<<<
 *         info.readonly = 0
 * 
 */
  __pyx_t_5 = __pyx_v_self->itemsize;
  __pyx_v_info->itemsize = __pyx_t_5;

  /* "View.MemoryView":196
 *         info.suboffsets = NULL
 *         info.itemsize = self.itemsize
 *         info.readonly = 0             # <<<<<<<<<<<<<<
 * 
 *         if flags & PyBUF_FORMAT:
 */
  __pyx_v_info->readonly = 0;

  /* "View.MemoryView":198
 *         info.readonly = 0
 * 
 *         if flags & PyBUF_FORMAT:             # <<<<<<<<<<<<<<
 *             info.format = self.format
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_flags & PyBUF_FORMAT) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":199
 * 
 *         if flags & PyBUF_FORMAT:
 *             info.format = self.format             # <<<<<<<<<<<<<<
 *         else:
 *             info.format = NULL
 */
    __pyx_t_4 = __pyx_v_self->format;
    __pyx_v_info->format = __pyx_t_4;

    /* "View.MemoryView":198
 *         info.readonly = 0
 * 
 *         if flags & PyBUF_FORMAT:             # <<<<<<<<<<<<<<
 *             info.format = self.format
 *         else:
 */
    goto __pyx_L5;
  }

  /* "View.MemoryView":201
 *             info.format = self.format
 *         else:
 *             info.format = NULL             # <<<<<<<<<<<<<<
 * 
 *         info.obj = self
 */
  /*else*/ {
    __pyx_v_info->format = NULL;
  }
  __pyx_L5:;

  /* "View.MemoryView":203
 *             info.format = NULL
 * 
 *         info.obj = self             # <<<<<<<<<<<<<<
 * 
 *     __pyx_getbuffer = capsule(<void *> &__pyx_array_getbuffer, "getbuffer(obj, view, flags)")
 */
  __Pyx_INCREF(((PyObject *)__pyx_v_self));
  __Pyx_GIVEREF(((PyObject *)__pyx_v_self));
  __Pyx_GOTREF(__pyx_v_info->obj);
  __Pyx_DECREF(__pyx_v_info->obj);
  __pyx_v_info->obj = ((PyObject *)__pyx_v_self);

  /* "View.MemoryView":181
 * 
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):             # <<<<<<<<<<<<<<
 *         cdef int bufmode = -1
 *         if self.mode == u"c":
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.array.__getbuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  if (__pyx_v_info != NULL && __pyx_v_info->obj != NULL) {
    __Pyx_GOTREF(__pyx_v_info->obj);
    __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = NULL;
  }
  goto __pyx_L2;
  __pyx_L0:;
  if (__pyx_v_info != NULL && __pyx_v_info->obj == Py_None) {
    __Pyx_GOTREF(Py_None);
    __Pyx_DECREF(Py_None); __pyx_v_info->obj = NULL;
  }
  __pyx_L2:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":207
 *     __pyx_getbuffer = capsule(<void *> &__pyx_array_getbuffer, "getbuffer(obj, view, flags)")
 * 
 *     def __dealloc__(array self):             # <<<<<<<<<<<<<<
 *         if self.callback_free_data != NULL:
 *             self.callback_free_data(self.data)
 */

/* Python wrapper */
static void __pyx_array___dealloc__(PyObject *__pyx_v_self); /*proto*/
static void __pyx_array___dealloc__(PyObject *__pyx_v_self) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__dealloc__ (wrapper)", 0);
  __pyx_array___pyx_pf_15View_dot_MemoryView_5array_4__dealloc__(((struct __pyx_array_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

static void __pyx_array___pyx_pf_15View_dot_MemoryView_5array_4__dealloc__(struct __pyx_array_obj *__pyx_v_self) {
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  __Pyx_RefNannySetupContext("__dealloc__", 0);

  /* "View.MemoryView":208
 * 
 *     def __dealloc__(array self):
 *         if self.callback_free_data != NULL:             # <<<<<<<<<<<<<<
 *             self.callback_free_data(self.data)
 *         elif self.free_data:
 */
  __pyx_t_1 = ((__pyx_v_self->callback_free_data != NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":209
 *     def __dealloc__(array self):
 *         if self.callback_free_data != NULL:
 *             self.callback_free_data(self.data)             # <<<<<<<<<<<<<<
 *         elif self.free_data:
 *             if self.dtype_is_object:
 */
    __pyx_v_self->callback_free_data(__pyx_v_self->data);

    /* "View.MemoryView":208
 * 
 *     def __dealloc__(array self):
 *         if self.callback_free_data != NULL:             # <<<<<<<<<<<<<<
 *             self.callback_free_data(self.data)
 *         elif self.free_data:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":210
 *         if self.callback_free_data != NULL:
 *             self.callback_free_data(self.data)
 *         elif self.free_data:             # <<<<<<<<<<<<<<
 *             if self.dtype_is_object:
 *                 refcount_objects_in_slice(self.data, self._shape,
 */
  __pyx_t_1 = (__pyx_v_self->free_data != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":211
 *             self.callback_free_data(self.data)
 *         elif self.free_data:
 *             if self.dtype_is_object:             # <<<<<<<<<<<<<<
 *                 refcount_objects_in_slice(self.data, self._shape,
 *                                           self._strides, self.ndim, False)
 */
    __pyx_t_1 = (__pyx_v_self->dtype_is_object != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":212
 *         elif self.free_data:
 *             if self.dtype_is_object:
 *                 refcount_objects_in_slice(self.data, self._shape,             # <<<<<<<<<<<<<<
 *                                           self._strides, self.ndim, False)
 *             free(self.data)
 */
      __pyx_memoryview_refcount_objects_in_slice(__pyx_v_self->data, __pyx_v_self->_shape, __pyx_v_self->_strides, __pyx_v_self->ndim, 0);

      /* "View.MemoryView":211
 *             self.callback_free_data(self.data)
 *         elif self.free_data:
 *             if self.dtype_is_object:             # <<<<<<<<<<<<<<
 *                 refcount_objects_in_slice(self.data, self._shape,
 *                                           self._strides, self.ndim, False)
 */
    }

    /* "View.MemoryView":214
 *                 refcount_objects_in_slice(self.data, self._shape,
 *                                           self._strides, self.ndim, False)
 *             free(self.data)             # <<<<<<<<<<<<<<
 *         PyMem_Free(self._shape)
 * 
 */
    free(__pyx_v_self->data);

    /* "View.MemoryView":210
 *         if self.callback_free_data != NULL:
 *             self.callback_free_data(self.data)
 *         elif self.free_data:             # <<<<<<<<<<<<<<
 *             if self.dtype_is_object:
 *                 refcount_objects_in_slice(self.data, self._shape,
 */
  }
  __pyx_L3:;

  /* "View.MemoryView":215
 *                                           self._strides, self.ndim, False)
 *             free(self.data)
 *         PyMem_Free(self._shape)             # <<<<<<<<<<<<<<
 * 
 *     property memview:
 */
  PyMem_Free(__pyx_v_self->_shape);

  /* "View.MemoryView":207
 *     __pyx_getbuffer = capsule(<void *> &__pyx_array_getbuffer, "getbuffer(obj, view, flags)")
 * 
 *     def __dealloc__(array self):             # <<<<<<<<<<<<<<
 *         if self.callback_free_data != NULL:
 *             self.callback_free_data(self.data)
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "View.MemoryView":219
 *     property memview:
 *         @cname('get_memview')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 * 
 *             flags =  PyBUF_ANY_CONTIGUOUS|PyBUF_FORMAT|PyBUF_WRITABLE
 */

/* Python wrapper */
static PyObject *get_memview(PyObject *__pyx_v_self); /*proto*/
static PyObject *get_memview(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_5array_7memview___get__(((struct __pyx_array_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_5array_7memview___get__(struct __pyx_array_obj *__pyx_v_self) {
  int __pyx_v_flags;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":221
 *         def __get__(self):
 * 
 *             flags =  PyBUF_ANY_CONTIGUOUS|PyBUF_FORMAT|PyBUF_WRITABLE             # <<<<<<<<<<<<<<
 *             return  memoryview(self, flags, self.dtype_is_object)
 * 
 */
  __pyx_v_flags = ((PyBUF_ANY_CONTIGUOUS | PyBUF_FORMAT) | PyBUF_WRITABLE);

  /* "View.MemoryView":222
 * 
 *             flags =  PyBUF_ANY_CONTIGUOUS|PyBUF_FORMAT|PyBUF_WRITABLE
 *             return  memoryview(self, flags, self.dtype_is_object)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_flags); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_self->dtype_is_object); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = PyTuple_New(3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_INCREF(((PyObject *)__pyx_v_self));
  __Pyx_GIVEREF(((PyObject *)__pyx_v_self));
  PyTuple_SET_ITEM(__pyx_t_3, 0, ((PyObject *)__pyx_v_self));
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_t_2);
  __pyx_t_1 = 0;
  __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_memoryview_type), __pyx_t_3, NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":219
 *     property memview:
 *         @cname('get_memview')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 * 
 *             flags =  PyBUF_ANY_CONTIGUOUS|PyBUF_FORMAT|PyBUF_WRITABLE
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.array.memview.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":225
 * 
 * 
 *     def __getattr__(self, attr):             # <<<<<<<<<<<<<<
 *         return getattr(self.memview, attr)
 * 
 */

/* Python wrapper */
static PyObject *__pyx_array___getattr__(PyObject *__pyx_v_self, PyObject *__pyx_v_attr); /*proto*/
static PyObject *__pyx_array___getattr__(PyObject *__pyx_v_self, PyObject *__pyx_v_attr) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getattr__ (wrapper)", 0);
  __pyx_r = __pyx_array___pyx_pf_15View_dot_MemoryView_5array_6__getattr__(((struct __pyx_array_obj *)__pyx_v_self), ((PyObject *)__pyx_v_attr));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_6__getattr__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_attr) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__getattr__", 0);

  /* "View.MemoryView":226
 * 
 *     def __getattr__(self, attr):
 *         return getattr(self.memview, attr)             # <<<<<<<<<<<<<<
 * 
 *     def __getitem__(self, item):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_memview); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 226; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_GetAttr(__pyx_t_1, __pyx_v_attr); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 226; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":225
 * 
 * 
 *     def __getattr__(self, attr):             # <<<<<<<<<<<<<<
 *         return getattr(self.memview, attr)
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.array.__getattr__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":228
 *         return getattr(self.memview, attr)
 * 
 *     def __getitem__(self, item):             # <<<<<<<<<<<<<<
 *         return self.memview[item]
 * 
 */

/* Python wrapper */
static PyObject *__pyx_array___getitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_item); /*proto*/
static PyObject *__pyx_array___getitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_item) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getitem__ (wrapper)", 0);
  __pyx_r = __pyx_array___pyx_pf_15View_dot_MemoryView_5array_8__getitem__(((struct __pyx_array_obj *)__pyx_v_self), ((PyObject *)__pyx_v_item));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_8__getitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__getitem__", 0);

  /* "View.MemoryView":229
 * 
 *     def __getitem__(self, item):
 *         return self.memview[item]             # <<<<<<<<<<<<<<
 * 
 *     def __setitem__(self, item, value):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_memview); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 229; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = PyObject_GetItem(__pyx_t_1, __pyx_v_item); if (unlikely(__pyx_t_2 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 229; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":228
 *         return getattr(self.memview, attr)
 * 
 *     def __getitem__(self, item):             # <<<<<<<<<<<<<<
 *         return self.memview[item]
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.array.__getitem__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":231
 *         return self.memview[item]
 * 
 *     def __setitem__(self, item, value):             # <<<<<<<<<<<<<<
 *         self.memview[item] = value
 * 
 */

/* Python wrapper */
static int __pyx_array___setitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value); /*proto*/
static int __pyx_array___setitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setitem__ (wrapper)", 0);
  __pyx_r = __pyx_array___pyx_pf_15View_dot_MemoryView_5array_10__setitem__(((struct __pyx_array_obj *)__pyx_v_self), ((PyObject *)__pyx_v_item), ((PyObject *)__pyx_v_value));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_10__setitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setitem__", 0);

  /* "View.MemoryView":232
 * 
 *     def __setitem__(self, item, value):
 *         self.memview[item] = value             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_memview); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 232; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  if (unlikely(PyObject_SetItem(__pyx_t_1, __pyx_v_item, __pyx_v_value) < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 232; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "View.MemoryView":231
 *         return self.memview[item]
 * 
 *     def __setitem__(self, item, value):             # <<<<<<<<<<<<<<
 *         self.memview[item] = value
 * 
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.array.__setitem__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":236
 * 
 * @cname("__pyx_array_new")
 * cdef array array_cwrapper(tuple shape, Py_ssize_t itemsize, char *format,             # <<<<<<<<<<<<<<
 *                           char *mode, char *buf):
 *     cdef array result
 */

static struct __pyx_array_obj *__pyx_array_new(PyObject *__pyx_v_shape, Py_ssize_t __pyx_v_itemsize, char *__pyx_v_format, char *__pyx_v_mode, char *__pyx_v_buf) {
  struct __pyx_array_obj *__pyx_v_result = 0;
  struct __pyx_array_obj *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("array_cwrapper", 0);

  /* "View.MemoryView":240
 *     cdef array result
 * 
 *     if buf == NULL:             # <<<<<<<<<<<<<<
 *         result = array(shape, itemsize, format, mode.decode('ASCII'))
 *     else:
 */
  __pyx_t_1 = ((__pyx_v_buf == NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":241
 * 
 *     if buf == NULL:
 *         result = array(shape, itemsize, format, mode.decode('ASCII'))             # <<<<<<<<<<<<<<
 *     else:
 *         result = array(shape, itemsize, format, mode.decode('ASCII'),
 */
    __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_itemsize); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 241; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = __Pyx_PyBytes_FromString(__pyx_v_format); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 241; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_4 = __Pyx_decode_c_string(__pyx_v_mode, 0, strlen(__pyx_v_mode), NULL, NULL, PyUnicode_DecodeASCII); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 241; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = PyTuple_New(4); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 241; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_INCREF(__pyx_v_shape);
    __Pyx_GIVEREF(__pyx_v_shape);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_v_shape);
    __Pyx_GIVEREF(__pyx_t_2);
    PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_2);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_5, 2, __pyx_t_3);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_5, 3, __pyx_t_4);
    __pyx_t_2 = 0;
    __pyx_t_3 = 0;
    __pyx_t_4 = 0;
    __pyx_t_4 = __Pyx_PyObject_Call(((PyObject *)__pyx_array_type), __pyx_t_5, NULL); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 241; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_v_result = ((struct __pyx_array_obj *)__pyx_t_4);
    __pyx_t_4 = 0;

    /* "View.MemoryView":240
 *     cdef array result
 * 
 *     if buf == NULL:             # <<<<<<<<<<<<<<
 *         result = array(shape, itemsize, format, mode.decode('ASCII'))
 *     else:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":243
 *         result = array(shape, itemsize, format, mode.decode('ASCII'))
 *     else:
 *         result = array(shape, itemsize, format, mode.decode('ASCII'),             # <<<<<<<<<<<<<<
 *                        allocate_buffer=False)
 *         result.data = buf
 */
  /*else*/ {
    __pyx_t_4 = PyInt_FromSsize_t(__pyx_v_itemsize); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 243; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = __Pyx_PyBytes_FromString(__pyx_v_format); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 243; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_3 = __Pyx_decode_c_string(__pyx_v_mode, 0, strlen(__pyx_v_mode), NULL, NULL, PyUnicode_DecodeASCII); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 243; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_2 = PyTuple_New(4); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 243; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_INCREF(__pyx_v_shape);
    __Pyx_GIVEREF(__pyx_v_shape);
    PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_v_shape);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_4);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_2, 2, __pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_2, 3, __pyx_t_3);
    __pyx_t_4 = 0;
    __pyx_t_5 = 0;
    __pyx_t_3 = 0;

    /* "View.MemoryView":244
 *     else:
 *         result = array(shape, itemsize, format, mode.decode('ASCII'),
 *                        allocate_buffer=False)             # <<<<<<<<<<<<<<
 *         result.data = buf
 * 
 */
    __pyx_t_3 = PyDict_New(); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 244; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    if (PyDict_SetItem(__pyx_t_3, __pyx_n_s_allocate_buffer, Py_False) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 244; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":243
 *         result = array(shape, itemsize, format, mode.decode('ASCII'))
 *     else:
 *         result = array(shape, itemsize, format, mode.decode('ASCII'),             # <<<<<<<<<<<<<<
 *                        allocate_buffer=False)
 *         result.data = buf
 */
    __pyx_t_5 = __Pyx_PyObject_Call(((PyObject *)__pyx_array_type), __pyx_t_2, __pyx_t_3); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 243; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_v_result = ((struct __pyx_array_obj *)__pyx_t_5);
    __pyx_t_5 = 0;

    /* "View.MemoryView":245
 *         result = array(shape, itemsize, format, mode.decode('ASCII'),
 *                        allocate_buffer=False)
 *         result.data = buf             # <<<<<<<<<<<<<<
 * 
 *     return result
 */
    __pyx_v_result->data = __pyx_v_buf;
  }
  __pyx_L3:;

  /* "View.MemoryView":247
 *         result.data = buf
 * 
 *     return result             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(((PyObject *)__pyx_r));
  __Pyx_INCREF(((PyObject *)__pyx_v_result));
  __pyx_r = __pyx_v_result;
  goto __pyx_L0;

  /* "View.MemoryView":236
 * 
 * @cname("__pyx_array_new")
 * cdef array array_cwrapper(tuple shape, Py_ssize_t itemsize, char *format,             # <<<<<<<<<<<<<<
 *                           char *mode, char *buf):
 *     cdef array result
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.array_cwrapper", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_result);
  __Pyx_XGIVEREF((PyObject *)__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":273
 * cdef class Enum(object):
 *     cdef object name
 *     def __init__(self, name):             # <<<<<<<<<<<<<<
 *         self.name = name
 *     def __repr__(self):
 */

/* Python wrapper */
static int __pyx_MemviewEnum___init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static int __pyx_MemviewEnum___init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_name = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__init__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_name,0};
    PyObject* values[1] = {0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_name)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 273; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 1) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
    }
    __pyx_v_name = values[0];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__init__", 1, 1, 1, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 273; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
  __pyx_L3_error:;
  __Pyx_AddTraceback("View.MemoryView.Enum.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return -1;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum___init__(((struct __pyx_MemviewEnum_obj *)__pyx_v_self), __pyx_v_name);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum___init__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v_name) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__init__", 0);

  /* "View.MemoryView":274
 *     cdef object name
 *     def __init__(self, name):
 *         self.name = name             # <<<<<<<<<<<<<<
 *     def __repr__(self):
 *         return self.name
 */
  __Pyx_INCREF(__pyx_v_name);
  __Pyx_GIVEREF(__pyx_v_name);
  __Pyx_GOTREF(__pyx_v_self->name);
  __Pyx_DECREF(__pyx_v_self->name);
  __pyx_v_self->name = __pyx_v_name;

  /* "View.MemoryView":273
 * cdef class Enum(object):
 *     cdef object name
 *     def __init__(self, name):             # <<<<<<<<<<<<<<
 *         self.name = name
 *     def __repr__(self):
 */

  /* function exit code */
  __pyx_r = 0;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":275
 *     def __init__(self, name):
 *         self.name = name
 *     def __repr__(self):             # <<<<<<<<<<<<<<
 *         return self.name
 * 
 */

/* Python wrapper */
static PyObject *__pyx_MemviewEnum___repr__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_MemviewEnum___repr__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__repr__ (wrapper)", 0);
  __pyx_r = __pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum_2__repr__(((struct __pyx_MemviewEnum_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum_2__repr__(struct __pyx_MemviewEnum_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__repr__", 0);

  /* "View.MemoryView":276
 *         self.name = name
 *     def __repr__(self):
 *         return self.name             # <<<<<<<<<<<<<<
 * 
 * cdef generic = Enum("<strided and direct or indirect>")
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_self->name);
  __pyx_r = __pyx_v_self->name;
  goto __pyx_L0;

  /* "View.MemoryView":275
 *     def __init__(self, name):
 *         self.name = name
 *     def __repr__(self):             # <<<<<<<<<<<<<<
 *         return self.name
 * 
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":290
 * 
 * @cname('__pyx_align_pointer')
 * cdef void *align_pointer(void *memory, size_t alignment) nogil:             # <<<<<<<<<<<<<<
 *     "Align pointer memory on a given boundary"
 *     cdef Py_intptr_t aligned_p = <Py_intptr_t> memory
 */

static void *__pyx_align_pointer(void *__pyx_v_memory, size_t __pyx_v_alignment) {
  Py_intptr_t __pyx_v_aligned_p;
  size_t __pyx_v_offset;
  void *__pyx_r;
  int __pyx_t_1;

  /* "View.MemoryView":292
 * cdef void *align_pointer(void *memory, size_t alignment) nogil:
 *     "Align pointer memory on a given boundary"
 *     cdef Py_intptr_t aligned_p = <Py_intptr_t> memory             # <<<<<<<<<<<<<<
 *     cdef size_t offset
 * 
 */
  __pyx_v_aligned_p = ((Py_intptr_t)__pyx_v_memory);

  /* "View.MemoryView":296
 * 
 *     with cython.cdivision(True):
 *         offset = aligned_p % alignment             # <<<<<<<<<<<<<<
 * 
 *     if offset > 0:
 */
  __pyx_v_offset = (__pyx_v_aligned_p % __pyx_v_alignment);

  /* "View.MemoryView":298
 *         offset = aligned_p % alignment
 * 
 *     if offset > 0:             # <<<<<<<<<<<<<<
 *         aligned_p += alignment - offset
 * 
 */
  __pyx_t_1 = ((__pyx_v_offset > 0) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":299
 * 
 *     if offset > 0:
 *         aligned_p += alignment - offset             # <<<<<<<<<<<<<<
 * 
 *     return <void *> aligned_p
 */
    __pyx_v_aligned_p = (__pyx_v_aligned_p + (__pyx_v_alignment - __pyx_v_offset));

    /* "View.MemoryView":298
 *         offset = aligned_p % alignment
 * 
 *     if offset > 0:             # <<<<<<<<<<<<<<
 *         aligned_p += alignment - offset
 * 
 */
  }

  /* "View.MemoryView":301
 *         aligned_p += alignment - offset
 * 
 *     return <void *> aligned_p             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview')
 */
  __pyx_r = ((void *)__pyx_v_aligned_p);
  goto __pyx_L0;

  /* "View.MemoryView":290
 * 
 * @cname('__pyx_align_pointer')
 * cdef void *align_pointer(void *memory, size_t alignment) nogil:             # <<<<<<<<<<<<<<
 *     "Align pointer memory on a given boundary"
 *     cdef Py_intptr_t aligned_p = <Py_intptr_t> memory
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":319
 *     cdef __Pyx_TypeInfo *typeinfo
 * 
 *     def __cinit__(memoryview self, object obj, int flags, bint dtype_is_object=False):             # <<<<<<<<<<<<<<
 *         self.obj = obj
 *         self.flags = flags
 */

/* Python wrapper */
static int __pyx_memoryview___cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static int __pyx_memoryview___cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_obj = 0;
  int __pyx_v_flags;
  int __pyx_v_dtype_is_object;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_obj,&__pyx_n_s_flags,&__pyx_n_s_dtype_is_object,0};
    PyObject* values[3] = {0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_obj)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        case  1:
        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_flags)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 2, 3, 1); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 319; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
        }
        case  2:
        if (kw_args > 0) {
          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dtype_is_object);
          if (value) { values[2] = value; kw_args--; }
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__cinit__") < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 319; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
      }
    } else {
      switch (PyTuple_GET_SIZE(__pyx_args)) {
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        break;
        default: goto __pyx_L5_argtuple_error;
      }
    }
    __pyx_v_obj = values[0];
    __pyx_v_flags = __Pyx_PyInt_As_int(values[1]); if (unlikely((__pyx_v_flags == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 319; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    if (values[2]) {
      __pyx_v_dtype_is_object = __Pyx_PyObject_IsTrue(values[2]); if (unlikely((__pyx_v_dtype_is_object == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 319; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
    } else {
      __pyx_v_dtype_is_object = ((int)0);
    }
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 2, 3, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 319; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
  __pyx_L3_error:;
  __Pyx_AddTraceback("View.MemoryView.memoryview.__cinit__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return -1;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__(((struct __pyx_memoryview_obj *)__pyx_v_self), __pyx_v_obj, __pyx_v_flags, __pyx_v_dtype_is_object);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj, int __pyx_v_flags, int __pyx_v_dtype_is_object) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__cinit__", 0);

  /* "View.MemoryView":320
 * 
 *     def __cinit__(memoryview self, object obj, int flags, bint dtype_is_object=False):
 *         self.obj = obj             # <<<<<<<<<<<<<<
 *         self.flags = flags
 *         if type(self) is memoryview or obj is not None:
 */
  __Pyx_INCREF(__pyx_v_obj);
  __Pyx_GIVEREF(__pyx_v_obj);
  __Pyx_GOTREF(__pyx_v_self->obj);
  __Pyx_DECREF(__pyx_v_self->obj);
  __pyx_v_self->obj = __pyx_v_obj;

  /* "View.MemoryView":321
 *     def __cinit__(memoryview self, object obj, int flags, bint dtype_is_object=False):
 *         self.obj = obj
 *         self.flags = flags             # <<<<<<<<<<<<<<
 *         if type(self) is memoryview or obj is not None:
 *             __Pyx_GetBuffer(obj, &self.view, flags)
 */
  __pyx_v_self->flags = __pyx_v_flags;

  /* "View.MemoryView":322
 *         self.obj = obj
 *         self.flags = flags
 *         if type(self) is memoryview or obj is not None:             # <<<<<<<<<<<<<<
 *             __Pyx_GetBuffer(obj, &self.view, flags)
 *             if <PyObject *> self.view.obj == NULL:
 */
  __pyx_t_2 = (((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))) == ((PyObject *)__pyx_memoryview_type));
  __pyx_t_3 = (__pyx_t_2 != 0);
  if (!__pyx_t_3) {
  } else {
    __pyx_t_1 = __pyx_t_3;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_3 = (__pyx_v_obj != Py_None);
  __pyx_t_2 = (__pyx_t_3 != 0);
  __pyx_t_1 = __pyx_t_2;
  __pyx_L4_bool_binop_done:;
  if (__pyx_t_1) {

    /* "View.MemoryView":323
 *         self.flags = flags
 *         if type(self) is memoryview or obj is not None:
 *             __Pyx_GetBuffer(obj, &self.view, flags)             # <<<<<<<<<<<<<<
 *             if <PyObject *> self.view.obj == NULL:
 *                 (<__pyx_buffer *> &self.view).obj = Py_None
 */
    __pyx_t_4 = __Pyx_GetBuffer(__pyx_v_obj, (&__pyx_v_self->view), __pyx_v_flags); if (unlikely(__pyx_t_4 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 323; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":324
 *         if type(self) is memoryview or obj is not None:
 *             __Pyx_GetBuffer(obj, &self.view, flags)
 *             if <PyObject *> self.view.obj == NULL:             # <<<<<<<<<<<<<<
 *                 (<__pyx_buffer *> &self.view).obj = Py_None
 *                 Py_INCREF(Py_None)
 */
    __pyx_t_1 = ((((PyObject *)__pyx_v_self->view.obj) == NULL) != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":325
 *             __Pyx_GetBuffer(obj, &self.view, flags)
 *             if <PyObject *> self.view.obj == NULL:
 *                 (<__pyx_buffer *> &self.view).obj = Py_None             # <<<<<<<<<<<<<<
 *                 Py_INCREF(Py_None)
 * 
 */
      ((Py_buffer *)(&__pyx_v_self->view))->obj = Py_None;

      /* "View.MemoryView":326
 *             if <PyObject *> self.view.obj == NULL:
 *                 (<__pyx_buffer *> &self.view).obj = Py_None
 *                 Py_INCREF(Py_None)             # <<<<<<<<<<<<<<
 * 
 *         self.lock = PyThread_allocate_lock()
 */
      Py_INCREF(Py_None);

      /* "View.MemoryView":324
 *         if type(self) is memoryview or obj is not None:
 *             __Pyx_GetBuffer(obj, &self.view, flags)
 *             if <PyObject *> self.view.obj == NULL:             # <<<<<<<<<<<<<<
 *                 (<__pyx_buffer *> &self.view).obj = Py_None
 *                 Py_INCREF(Py_None)
 */
    }

    /* "View.MemoryView":322
 *         self.obj = obj
 *         self.flags = flags
 *         if type(self) is memoryview or obj is not None:             # <<<<<<<<<<<<<<
 *             __Pyx_GetBuffer(obj, &self.view, flags)
 *             if <PyObject *> self.view.obj == NULL:
 */
  }

  /* "View.MemoryView":328
 *                 Py_INCREF(Py_None)
 * 
 *         self.lock = PyThread_allocate_lock()             # <<<<<<<<<<<<<<
 *         if self.lock == NULL:
 *             raise MemoryError
 */
  __pyx_v_self->lock = PyThread_allocate_lock();

  /* "View.MemoryView":329
 * 
 *         self.lock = PyThread_allocate_lock()
 *         if self.lock == NULL:             # <<<<<<<<<<<<<<
 *             raise MemoryError
 * 
 */
  __pyx_t_1 = ((__pyx_v_self->lock == NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":330
 *         self.lock = PyThread_allocate_lock()
 *         if self.lock == NULL:
 *             raise MemoryError             # <<<<<<<<<<<<<<
 * 
 *         if flags & PyBUF_FORMAT:
 */
    PyErr_NoMemory(); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 330; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":329
 * 
 *         self.lock = PyThread_allocate_lock()
 *         if self.lock == NULL:             # <<<<<<<<<<<<<<
 *             raise MemoryError
 * 
 */
  }

  /* "View.MemoryView":332
 *             raise MemoryError
 * 
 *         if flags & PyBUF_FORMAT:             # <<<<<<<<<<<<<<
 *             self.dtype_is_object = self.view.format == b'O'
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_flags & PyBUF_FORMAT) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":333
 * 
 *         if flags & PyBUF_FORMAT:
 *             self.dtype_is_object = self.view.format == b'O'             # <<<<<<<<<<<<<<
 *         else:
 *             self.dtype_is_object = dtype_is_object
 */
    __pyx_t_5 = __Pyx_PyBytes_FromString(__pyx_v_self->view.format); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 333; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_6 = PyObject_RichCompare(__pyx_t_5, __pyx_n_b_O, Py_EQ); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 333; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 333; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_v_self->dtype_is_object = __pyx_t_1;

    /* "View.MemoryView":332
 *             raise MemoryError
 * 
 *         if flags & PyBUF_FORMAT:             # <<<<<<<<<<<<<<
 *             self.dtype_is_object = self.view.format == b'O'
 *         else:
 */
    goto __pyx_L8;
  }

  /* "View.MemoryView":335
 *             self.dtype_is_object = self.view.format == b'O'
 *         else:
 *             self.dtype_is_object = dtype_is_object             # <<<<<<<<<<<<<<
 * 
 *         self.acquisition_count_aligned_p = <__pyx_atomic_int *> align_pointer(
 */
  /*else*/ {
    __pyx_v_self->dtype_is_object = __pyx_v_dtype_is_object;
  }
  __pyx_L8:;

  /* "View.MemoryView":337
 *             self.dtype_is_object = dtype_is_object
 * 
 *         self.acquisition_count_aligned_p = <__pyx_atomic_int *> align_pointer(             # <<<<<<<<<<<<<<
 *                   <void *> &self.acquisition_count[0], sizeof(__pyx_atomic_int))
 *         self.typeinfo = NULL
 */
  __pyx_v_self->acquisition_count_aligned_p = ((__pyx_atomic_int *)__pyx_align_pointer(((void *)(&(__pyx_v_self->acquisition_count[0]))), (sizeof(__pyx_atomic_int))));

  /* "View.MemoryView":339
 *         self.acquisition_count_aligned_p = <__pyx_atomic_int *> align_pointer(
 *                   <void *> &self.acquisition_count[0], sizeof(__pyx_atomic_int))
 *         self.typeinfo = NULL             # <<<<<<<<<<<<<<
 * 
 *     def __dealloc__(memoryview self):
 */
  __pyx_v_self->typeinfo = NULL;

  /* "View.MemoryView":319
 *     cdef __Pyx_TypeInfo *typeinfo
 * 
 *     def __cinit__(memoryview self, object obj, int flags, bint dtype_is_object=False):             # <<<<<<<<<<<<<<
 *         self.obj = obj
 *         self.flags = flags
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_AddTraceback("View.MemoryView.memoryview.__cinit__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":341
 *         self.typeinfo = NULL
 * 
 *     def __dealloc__(memoryview self):             # <<<<<<<<<<<<<<
 *         if self.obj is not None:
 *             __Pyx_ReleaseBuffer(&self.view)
 */

/* Python wrapper */
static void __pyx_memoryview___dealloc__(PyObject *__pyx_v_self); /*proto*/
static void __pyx_memoryview___dealloc__(PyObject *__pyx_v_self) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__dealloc__ (wrapper)", 0);
  __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__dealloc__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__dealloc__(struct __pyx_memoryview_obj *__pyx_v_self) {
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  __Pyx_RefNannySetupContext("__dealloc__", 0);

  /* "View.MemoryView":342
 * 
 *     def __dealloc__(memoryview self):
 *         if self.obj is not None:             # <<<<<<<<<<<<<<
 *             __Pyx_ReleaseBuffer(&self.view)
 * 
 */
  __pyx_t_1 = (__pyx_v_self->obj != Py_None);
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":343
 *     def __dealloc__(memoryview self):
 *         if self.obj is not None:
 *             __Pyx_ReleaseBuffer(&self.view)             # <<<<<<<<<<<<<<
 * 
 *         if self.lock != NULL:
 */
    __Pyx_ReleaseBuffer((&__pyx_v_self->view));

    /* "View.MemoryView":342
 * 
 *     def __dealloc__(memoryview self):
 *         if self.obj is not None:             # <<<<<<<<<<<<<<
 *             __Pyx_ReleaseBuffer(&self.view)
 * 
 */
  }

  /* "View.MemoryView":345
 *             __Pyx_ReleaseBuffer(&self.view)
 * 
 *         if self.lock != NULL:             # <<<<<<<<<<<<<<
 *             PyThread_free_lock(self.lock)
 * 
 */
  __pyx_t_2 = ((__pyx_v_self->lock != NULL) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":346
 * 
 *         if self.lock != NULL:
 *             PyThread_free_lock(self.lock)             # <<<<<<<<<<<<<<
 * 
 *     cdef char *get_item_pointer(memoryview self, object index) except NULL:
 */
    PyThread_free_lock(__pyx_v_self->lock);

    /* "View.MemoryView":345
 *             __Pyx_ReleaseBuffer(&self.view)
 * 
 *         if self.lock != NULL:             # <<<<<<<<<<<<<<
 *             PyThread_free_lock(self.lock)
 * 
 */
  }

  /* "View.MemoryView":341
 *         self.typeinfo = NULL
 * 
 *     def __dealloc__(memoryview self):             # <<<<<<<<<<<<<<
 *         if self.obj is not None:
 *             __Pyx_ReleaseBuffer(&self.view)
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "View.MemoryView":348
 *             PyThread_free_lock(self.lock)
 * 
 *     cdef char *get_item_pointer(memoryview self, object index) except NULL:             # <<<<<<<<<<<<<<
 *         cdef Py_ssize_t dim
 *         cdef char *itemp = <char *> self.view.buf
 */

static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index) {
  Py_ssize_t __pyx_v_dim;
  char *__pyx_v_itemp;
  PyObject *__pyx_v_idx = NULL;
  char *__pyx_r;
  __Pyx_RefNannyDeclarations
  Py_ssize_t __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  Py_ssize_t __pyx_t_3;
  PyObject *(*__pyx_t_4)(PyObject *);
  PyObject *__pyx_t_5 = NULL;
  Py_ssize_t __pyx_t_6;
  char *__pyx_t_7;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("get_item_pointer", 0);

  /* "View.MemoryView":350
 *     cdef char *get_item_pointer(memoryview self, object index) except NULL:
 *         cdef Py_ssize_t dim
 *         cdef char *itemp = <char *> self.view.buf             # <<<<<<<<<<<<<<
 * 
 *         for dim, idx in enumerate(index):
 */
  __pyx_v_itemp = ((char *)__pyx_v_self->view.buf);

  /* "View.MemoryView":352
 *         cdef char *itemp = <char *> self.view.buf
 * 
 *         for dim, idx in enumerate(index):             # <<<<<<<<<<<<<<
 *             itemp = pybuffer_index(&self.view, itemp, idx, dim)
 * 
 */
  __pyx_t_1 = 0;
  if (likely(PyList_CheckExact(__pyx_v_index)) || PyTuple_CheckExact(__pyx_v_index)) {
    __pyx_t_2 = __pyx_v_index; __Pyx_INCREF(__pyx_t_2); __pyx_t_3 = 0;
    __pyx_t_4 = NULL;
  } else {
    __pyx_t_3 = -1; __pyx_t_2 = PyObject_GetIter(__pyx_v_index); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 352; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_4 = Py_TYPE(__pyx_t_2)->tp_iternext; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 352; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  for (;;) {
    if (likely(!__pyx_t_4)) {
      if (likely(PyList_CheckExact(__pyx_t_2))) {
        if (__pyx_t_3 >= PyList_GET_SIZE(__pyx_t_2)) break;
        #if CYTHON_COMPILING_IN_CPYTHON
        __pyx_t_5 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 352; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        #else
        __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 352; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __Pyx_GOTREF(__pyx_t_5);
        #endif
      } else {
        if (__pyx_t_3 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
        #if CYTHON_COMPILING_IN_CPYTHON
        __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 352; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        #else
        __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 352; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __Pyx_GOTREF(__pyx_t_5);
        #endif
      }
    } else {
      __pyx_t_5 = __pyx_t_4(__pyx_t_2);
      if (unlikely(!__pyx_t_5)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(exc_type == PyExc_StopIteration || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else {__pyx_filename = __pyx_f[1]; __pyx_lineno = 352; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_5);
    }
    __Pyx_XDECREF_SET(__pyx_v_idx, __pyx_t_5);
    __pyx_t_5 = 0;
    __pyx_v_dim = __pyx_t_1;
    __pyx_t_1 = (__pyx_t_1 + 1);

    /* "View.MemoryView":353
 * 
 *         for dim, idx in enumerate(index):
 *             itemp = pybuffer_index(&self.view, itemp, idx, dim)             # <<<<<<<<<<<<<<
 * 
 *         return itemp
 */
    __pyx_t_6 = __Pyx_PyIndex_AsSsize_t(__pyx_v_idx); if (unlikely((__pyx_t_6 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 353; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_t_7 = __pyx_pybuffer_index((&__pyx_v_self->view), __pyx_v_itemp, __pyx_t_6, __pyx_v_dim); if (unlikely(__pyx_t_7 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 353; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_v_itemp = __pyx_t_7;

    /* "View.MemoryView":352
 *         cdef char *itemp = <char *> self.view.buf
 * 
 *         for dim, idx in enumerate(index):             # <<<<<<<<<<<<<<
 *             itemp = pybuffer_index(&self.view, itemp, idx, dim)
 * 
 */
  }
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "View.MemoryView":355
 *             itemp = pybuffer_index(&self.view, itemp, idx, dim)
 * 
 *         return itemp             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = __pyx_v_itemp;
  goto __pyx_L0;

  /* "View.MemoryView":348
 *             PyThread_free_lock(self.lock)
 * 
 *     cdef char *get_item_pointer(memoryview self, object index) except NULL:             # <<<<<<<<<<<<<<
 *         cdef Py_ssize_t dim
 *         cdef char *itemp = <char *> self.view.buf
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.memoryview.get_item_pointer", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_idx);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":358
 * 
 * 
 *     def __getitem__(memoryview self, object index):             # <<<<<<<<<<<<<<
 *         if index is Ellipsis:
 *             return self
 */

/* Python wrapper */
static PyObject *__pyx_memoryview___getitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_index); /*proto*/
static PyObject *__pyx_memoryview___getitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_index) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getitem__ (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_4__getitem__(((struct __pyx_memoryview_obj *)__pyx_v_self), ((PyObject *)__pyx_v_index));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_4__getitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index) {
  PyObject *__pyx_v_have_slices = NULL;
  PyObject *__pyx_v_indices = NULL;
  char *__pyx_v_itemp;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  char *__pyx_t_6;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__getitem__", 0);

  /* "View.MemoryView":359
 * 
 *     def __getitem__(memoryview self, object index):
 *         if index is Ellipsis:             # <<<<<<<<<<<<<<
 *             return self
 * 
 */
  __pyx_t_1 = (__pyx_v_index == __pyx_builtin_Ellipsis);
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":360
 *     def __getitem__(memoryview self, object index):
 *         if index is Ellipsis:
 *             return self             # <<<<<<<<<<<<<<
 * 
 *         have_slices, indices = _unellipsify(index, self.view.ndim)
 */
    __Pyx_XDECREF(__pyx_r);
    __Pyx_INCREF(((PyObject *)__pyx_v_self));
    __pyx_r = ((PyObject *)__pyx_v_self);
    goto __pyx_L0;

    /* "View.MemoryView":359
 * 
 *     def __getitem__(memoryview self, object index):
 *         if index is Ellipsis:             # <<<<<<<<<<<<<<
 *             return self
 * 
 */
  }

  /* "View.MemoryView":362
 *             return self
 * 
 *         have_slices, indices = _unellipsify(index, self.view.ndim)             # <<<<<<<<<<<<<<
 * 
 *         cdef char *itemp
 */
  __pyx_t_3 = _unellipsify(__pyx_v_index, __pyx_v_self->view.ndim); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 362; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  if (likely(__pyx_t_3 != Py_None)) {
    PyObject* sequence = __pyx_t_3;
    #if CYTHON_COMPILING_IN_CPYTHON
    Py_ssize_t size = Py_SIZE(sequence);
    #else
    Py_ssize_t size = PySequence_Size(sequence);
    #endif
    if (unlikely(size != 2)) {
      if (size > 2) __Pyx_RaiseTooManyValuesError(2);
      else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
      {__pyx_filename = __pyx_f[1]; __pyx_lineno = 362; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
    #if CYTHON_COMPILING_IN_CPYTHON
    __pyx_t_4 = PyTuple_GET_ITEM(sequence, 0); 
    __pyx_t_5 = PyTuple_GET_ITEM(sequence, 1); 
    __Pyx_INCREF(__pyx_t_4);
    __Pyx_INCREF(__pyx_t_5);
    #else
    __pyx_t_4 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 362; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 362; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    #endif
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  } else {
    __Pyx_RaiseNoneNotIterableError(); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 362; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  __pyx_v_have_slices = __pyx_t_4;
  __pyx_t_4 = 0;
  __pyx_v_indices = __pyx_t_5;
  __pyx_t_5 = 0;

  /* "View.MemoryView":365
 * 
 *         cdef char *itemp
 *         if have_slices:             # <<<<<<<<<<<<<<
 *             return memview_slice(self, indices)
 *         else:
 */
  __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_have_slices); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 365; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  if (__pyx_t_2) {

    /* "View.MemoryView":366
 *         cdef char *itemp
 *         if have_slices:
 *             return memview_slice(self, indices)             # <<<<<<<<<<<<<<
 *         else:
 *             itemp = self.get_item_pointer(indices)
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_3 = ((PyObject *)__pyx_memview_slice(__pyx_v_self, __pyx_v_indices)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 366; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_r = __pyx_t_3;
    __pyx_t_3 = 0;
    goto __pyx_L0;

    /* "View.MemoryView":365
 * 
 *         cdef char *itemp
 *         if have_slices:             # <<<<<<<<<<<<<<
 *             return memview_slice(self, indices)
 *         else:
 */
  }

  /* "View.MemoryView":368
 *             return memview_slice(self, indices)
 *         else:
 *             itemp = self.get_item_pointer(indices)             # <<<<<<<<<<<<<<
 *             return self.convert_item_to_object(itemp)
 * 
 */
  /*else*/ {
    __pyx_t_6 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->get_item_pointer(__pyx_v_self, __pyx_v_indices); if (unlikely(__pyx_t_6 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 368; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_v_itemp = __pyx_t_6;

    /* "View.MemoryView":369
 *         else:
 *             itemp = self.get_item_pointer(indices)
 *             return self.convert_item_to_object(itemp)             # <<<<<<<<<<<<<<
 * 
 *     def __setitem__(memoryview self, object index, object value):
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_3 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->convert_item_to_object(__pyx_v_self, __pyx_v_itemp); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 369; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_r = __pyx_t_3;
    __pyx_t_3 = 0;
    goto __pyx_L0;
  }

  /* "View.MemoryView":358
 * 
 * 
 *     def __getitem__(memoryview self, object index):             # <<<<<<<<<<<<<<
 *         if index is Ellipsis:
 *             return self
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.memoryview.__getitem__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_have_slices);
  __Pyx_XDECREF(__pyx_v_indices);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":371
 *             return self.convert_item_to_object(itemp)
 * 
 *     def __setitem__(memoryview self, object index, object value):             # <<<<<<<<<<<<<<
 *         have_slices, index = _unellipsify(index, self.view.ndim)
 * 
 */

/* Python wrapper */
static int __pyx_memoryview___setitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /*proto*/
static int __pyx_memoryview___setitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setitem__ (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_6__setitem__(((struct __pyx_memoryview_obj *)__pyx_v_self), ((PyObject *)__pyx_v_index), ((PyObject *)__pyx_v_value));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_6__setitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value) {
  PyObject *__pyx_v_have_slices = NULL;
  PyObject *__pyx_v_obj = NULL;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setitem__", 0);
  __Pyx_INCREF(__pyx_v_index);

  /* "View.MemoryView":372
 * 
 *     def __setitem__(memoryview self, object index, object value):
 *         have_slices, index = _unellipsify(index, self.view.ndim)             # <<<<<<<<<<<<<<
 * 
 *         if have_slices:
 */
  __pyx_t_1 = _unellipsify(__pyx_v_index, __pyx_v_self->view.ndim); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 372; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  if (likely(__pyx_t_1 != Py_None)) {
    PyObject* sequence = __pyx_t_1;
    #if CYTHON_COMPILING_IN_CPYTHON
    Py_ssize_t size = Py_SIZE(sequence);
    #else
    Py_ssize_t size = PySequence_Size(sequence);
    #endif
    if (unlikely(size != 2)) {
      if (size > 2) __Pyx_RaiseTooManyValuesError(2);
      else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
      {__pyx_filename = __pyx_f[1]; __pyx_lineno = 372; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
    #if CYTHON_COMPILING_IN_CPYTHON
    __pyx_t_2 = PyTuple_GET_ITEM(sequence, 0); 
    __pyx_t_3 = PyTuple_GET_ITEM(sequence, 1); 
    __Pyx_INCREF(__pyx_t_2);
    __Pyx_INCREF(__pyx_t_3);
    #else
    __pyx_t_2 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 372; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 372; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    #endif
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  } else {
    __Pyx_RaiseNoneNotIterableError(); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 372; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  __pyx_v_have_slices = __pyx_t_2;
  __pyx_t_2 = 0;
  __Pyx_DECREF_SET(__pyx_v_index, __pyx_t_3);
  __pyx_t_3 = 0;

  /* "View.MemoryView":374
 *         have_slices, index = _unellipsify(index, self.view.ndim)
 * 
 *         if have_slices:             # <<<<<<<<<<<<<<
 *             obj = self.is_slice(value)
 *             if obj:
 */
  __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_v_have_slices); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 374; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  if (__pyx_t_4) {

    /* "View.MemoryView":375
 * 
 *         if have_slices:
 *             obj = self.is_slice(value)             # <<<<<<<<<<<<<<
 *             if obj:
 *                 self.setitem_slice_assignment(self[index], obj)
 */
    __pyx_t_1 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->is_slice(__pyx_v_self, __pyx_v_value); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 375; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_v_obj = __pyx_t_1;
    __pyx_t_1 = 0;

    /* "View.MemoryView":376
 *         if have_slices:
 *             obj = self.is_slice(value)
 *             if obj:             # <<<<<<<<<<<<<<
 *                 self.setitem_slice_assignment(self[index], obj)
 *             else:
 */
    __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_v_obj); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 376; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    if (__pyx_t_4) {

      /* "View.MemoryView":377
 *             obj = self.is_slice(value)
 *             if obj:
 *                 self.setitem_slice_assignment(self[index], obj)             # <<<<<<<<<<<<<<
 *             else:
 *                 self.setitem_slice_assign_scalar(self[index], value)
 */
      __pyx_t_1 = PyObject_GetItem(((PyObject *)__pyx_v_self), __pyx_v_index); if (unlikely(__pyx_t_1 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 377; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
      __Pyx_GOTREF(__pyx_t_1);
      __pyx_t_3 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->setitem_slice_assignment(__pyx_v_self, __pyx_t_1, __pyx_v_obj); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 377; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_3);
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

      /* "View.MemoryView":376
 *         if have_slices:
 *             obj = self.is_slice(value)
 *             if obj:             # <<<<<<<<<<<<<<
 *                 self.setitem_slice_assignment(self[index], obj)
 *             else:
 */
      goto __pyx_L4;
    }

    /* "View.MemoryView":379
 *                 self.setitem_slice_assignment(self[index], obj)
 *             else:
 *                 self.setitem_slice_assign_scalar(self[index], value)             # <<<<<<<<<<<<<<
 *         else:
 *             self.setitem_indexed(index, value)
 */
    /*else*/ {
      __pyx_t_3 = PyObject_GetItem(((PyObject *)__pyx_v_self), __pyx_v_index); if (unlikely(__pyx_t_3 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 379; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
      __Pyx_GOTREF(__pyx_t_3);
      if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_memoryview_type))))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 379; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __pyx_t_1 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->setitem_slice_assign_scalar(__pyx_v_self, ((struct __pyx_memoryview_obj *)__pyx_t_3), __pyx_v_value); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 379; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_1);
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    }
    __pyx_L4:;

    /* "View.MemoryView":374
 *         have_slices, index = _unellipsify(index, self.view.ndim)
 * 
 *         if have_slices:             # <<<<<<<<<<<<<<
 *             obj = self.is_slice(value)
 *             if obj:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":381
 *                 self.setitem_slice_assign_scalar(self[index], value)
 *         else:
 *             self.setitem_indexed(index, value)             # <<<<<<<<<<<<<<
 * 
 *     cdef is_slice(self, obj):
 */
  /*else*/ {
    __pyx_t_1 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->setitem_indexed(__pyx_v_self, __pyx_v_index, __pyx_v_value); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 381; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  }
  __pyx_L3:;

  /* "View.MemoryView":371
 *             return self.convert_item_to_object(itemp)
 * 
 *     def __setitem__(memoryview self, object index, object value):             # <<<<<<<<<<<<<<
 *         have_slices, index = _unellipsify(index, self.view.ndim)
 * 
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview.__setitem__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_have_slices);
  __Pyx_XDECREF(__pyx_v_obj);
  __Pyx_XDECREF(__pyx_v_index);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":383
 *             self.setitem_indexed(index, value)
 * 
 *     cdef is_slice(self, obj):             # <<<<<<<<<<<<<<
 *         if not isinstance(obj, memoryview):
 *             try:
 */

static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  int __pyx_t_9;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("is_slice", 0);
  __Pyx_INCREF(__pyx_v_obj);

  /* "View.MemoryView":384
 * 
 *     cdef is_slice(self, obj):
 *         if not isinstance(obj, memoryview):             # <<<<<<<<<<<<<<
 *             try:
 *                 obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS,
 */
  __pyx_t_1 = __Pyx_TypeCheck(__pyx_v_obj, __pyx_memoryview_type); 
  __pyx_t_2 = ((!(__pyx_t_1 != 0)) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":385
 *     cdef is_slice(self, obj):
 *         if not isinstance(obj, memoryview):
 *             try:             # <<<<<<<<<<<<<<
 *                 obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS,
 *                                  self.dtype_is_object)
 */
    {
      __Pyx_ExceptionSave(&__pyx_t_3, &__pyx_t_4, &__pyx_t_5);
      __Pyx_XGOTREF(__pyx_t_3);
      __Pyx_XGOTREF(__pyx_t_4);
      __Pyx_XGOTREF(__pyx_t_5);
      /*try:*/ {

        /* "View.MemoryView":386
 *         if not isinstance(obj, memoryview):
 *             try:
 *                 obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS,             # <<<<<<<<<<<<<<
 *                                  self.dtype_is_object)
 *             except TypeError:
 */
        __pyx_t_6 = __Pyx_PyInt_From_int((__pyx_v_self->flags | PyBUF_ANY_CONTIGUOUS)); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 386; __pyx_clineno = __LINE__; goto __pyx_L4_error;}
        __Pyx_GOTREF(__pyx_t_6);

        /* "View.MemoryView":387
 *             try:
 *                 obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS,
 *                                  self.dtype_is_object)             # <<<<<<<<<<<<<<
 *             except TypeError:
 *                 return None
 */
        __pyx_t_7 = __Pyx_PyBool_FromLong(__pyx_v_self->dtype_is_object); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 387; __pyx_clineno = __LINE__; goto __pyx_L4_error;}
        __Pyx_GOTREF(__pyx_t_7);

        /* "View.MemoryView":386
 *         if not isinstance(obj, memoryview):
 *             try:
 *                 obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS,             # <<<<<<<<<<<<<<
 *                                  self.dtype_is_object)
 *             except TypeError:
 */
        __pyx_t_8 = PyTuple_New(3); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 386; __pyx_clineno = __LINE__; goto __pyx_L4_error;}
        __Pyx_GOTREF(__pyx_t_8);
        __Pyx_INCREF(__pyx_v_obj);
        __Pyx_GIVEREF(__pyx_v_obj);
        PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_v_obj);
        __Pyx_GIVEREF(__pyx_t_6);
        PyTuple_SET_ITEM(__pyx_t_8, 1, __pyx_t_6);
        __Pyx_GIVEREF(__pyx_t_7);
        PyTuple_SET_ITEM(__pyx_t_8, 2, __pyx_t_7);
        __pyx_t_6 = 0;
        __pyx_t_7 = 0;
        __pyx_t_7 = __Pyx_PyObject_Call(((PyObject *)__pyx_memoryview_type), __pyx_t_8, NULL); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 386; __pyx_clineno = __LINE__; goto __pyx_L4_error;}
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
        __Pyx_DECREF_SET(__pyx_v_obj, __pyx_t_7);
        __pyx_t_7 = 0;

        /* "View.MemoryView":385
 *     cdef is_slice(self, obj):
 *         if not isinstance(obj, memoryview):
 *             try:             # <<<<<<<<<<<<<<
 *                 obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS,
 *                                  self.dtype_is_object)
 */
      }
      __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
      __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
      __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
      goto __pyx_L11_try_end;
      __pyx_L4_error:;
      __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
      __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
      __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;

      /* "View.MemoryView":388
 *                 obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS,
 *                                  self.dtype_is_object)
 *             except TypeError:             # <<<<<<<<<<<<<<
 *                 return None
 * 
 */
      __pyx_t_9 = PyErr_ExceptionMatches(__pyx_builtin_TypeError);
      if (__pyx_t_9) {
        __Pyx_AddTraceback("View.MemoryView.memoryview.is_slice", __pyx_clineno, __pyx_lineno, __pyx_filename);
        if (__Pyx_GetException(&__pyx_t_7, &__pyx_t_8, &__pyx_t_6) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L6_except_error;}
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_GOTREF(__pyx_t_8);
        __Pyx_GOTREF(__pyx_t_6);

        /* "View.MemoryView":389
 *                                  self.dtype_is_object)
 *             except TypeError:
 *                 return None             # <<<<<<<<<<<<<<
 * 
 *         return obj
 */
        __Pyx_XDECREF(__pyx_r);
        __Pyx_INCREF(Py_None);
        __pyx_r = Py_None;
        __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
        goto __pyx_L7_except_return;
      }
      goto __pyx_L6_except_error;
      __pyx_L6_except_error:;

      /* "View.MemoryView":385
 *     cdef is_slice(self, obj):
 *         if not isinstance(obj, memoryview):
 *             try:             # <<<<<<<<<<<<<<
 *                 obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS,
 *                                  self.dtype_is_object)
 */
      __Pyx_XGIVEREF(__pyx_t_3);
      __Pyx_XGIVEREF(__pyx_t_4);
      __Pyx_XGIVEREF(__pyx_t_5);
      __Pyx_ExceptionReset(__pyx_t_3, __pyx_t_4, __pyx_t_5);
      goto __pyx_L1_error;
      __pyx_L7_except_return:;
      __Pyx_XGIVEREF(__pyx_t_3);
      __Pyx_XGIVEREF(__pyx_t_4);
      __Pyx_XGIVEREF(__pyx_t_5);
      __Pyx_ExceptionReset(__pyx_t_3, __pyx_t_4, __pyx_t_5);
      goto __pyx_L0;
      __pyx_L11_try_end:;
    }

    /* "View.MemoryView":384
 * 
 *     cdef is_slice(self, obj):
 *         if not isinstance(obj, memoryview):             # <<<<<<<<<<<<<<
 *             try:
 *                 obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS,
 */
  }

  /* "View.MemoryView":391
 *                 return None
 * 
 *         return obj             # <<<<<<<<<<<<<<
 * 
 *     cdef setitem_slice_assignment(self, dst, src):
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_obj);
  __pyx_r = __pyx_v_obj;
  goto __pyx_L0;

  /* "View.MemoryView":383
 *             self.setitem_indexed(index, value)
 * 
 *     cdef is_slice(self, obj):             # <<<<<<<<<<<<<<
 *         if not isinstance(obj, memoryview):
 *             try:
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_AddTraceback("View.MemoryView.memoryview.is_slice", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_obj);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":393
 *         return obj
 * 
 *     cdef setitem_slice_assignment(self, dst, src):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice dst_slice
 *         cdef __Pyx_memviewslice src_slice
 */

static PyObject *__pyx_memoryview_setitem_slice_assignment(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_dst, PyObject *__pyx_v_src) {
  __Pyx_memviewslice __pyx_v_dst_slice;
  __Pyx_memviewslice __pyx_v_src_slice;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("setitem_slice_assignment", 0);

  /* "View.MemoryView":397
 *         cdef __Pyx_memviewslice src_slice
 * 
 *         memoryview_copy_contents(get_slice_from_memview(src, &src_slice)[0],             # <<<<<<<<<<<<<<
 *                                  get_slice_from_memview(dst, &dst_slice)[0],
 *                                  src.ndim, dst.ndim, self.dtype_is_object)
 */
  if (!(likely(((__pyx_v_src) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_src, __pyx_memoryview_type))))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 397; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  /* "View.MemoryView":398
 * 
 *         memoryview_copy_contents(get_slice_from_memview(src, &src_slice)[0],
 *                                  get_slice_from_memview(dst, &dst_slice)[0],             # <<<<<<<<<<<<<<
 *                                  src.ndim, dst.ndim, self.dtype_is_object)
 * 
 */
  if (!(likely(((__pyx_v_dst) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_dst, __pyx_memoryview_type))))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 398; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  /* "View.MemoryView":399
 *         memoryview_copy_contents(get_slice_from_memview(src, &src_slice)[0],
 *                                  get_slice_from_memview(dst, &dst_slice)[0],
 *                                  src.ndim, dst.ndim, self.dtype_is_object)             # <<<<<<<<<<<<<<
 * 
 *     cdef setitem_slice_assign_scalar(self, memoryview dst, value):
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_src, __pyx_n_s_ndim); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 399; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 399; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_dst, __pyx_n_s_ndim); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 399; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_3 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 399; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "View.MemoryView":397
 *         cdef __Pyx_memviewslice src_slice
 * 
 *         memoryview_copy_contents(get_slice_from_memview(src, &src_slice)[0],             # <<<<<<<<<<<<<<
 *                                  get_slice_from_memview(dst, &dst_slice)[0],
 *                                  src.ndim, dst.ndim, self.dtype_is_object)
 */
  __pyx_t_4 = __pyx_memoryview_copy_contents((__pyx_memoryview_get_slice_from_memoryview(((struct __pyx_memoryview_obj *)__pyx_v_src), (&__pyx_v_src_slice))[0]), (__pyx_memoryview_get_slice_from_memoryview(((struct __pyx_memoryview_obj *)__pyx_v_dst), (&__pyx_v_dst_slice))[0]), __pyx_t_2, __pyx_t_3, __pyx_v_self->dtype_is_object); if (unlikely(__pyx_t_4 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 397; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  /* "View.MemoryView":393
 *         return obj
 * 
 *     cdef setitem_slice_assignment(self, dst, src):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice dst_slice
 *         cdef __Pyx_memviewslice src_slice
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview.setitem_slice_assignment", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":401
 *                                  src.ndim, dst.ndim, self.dtype_is_object)
 * 
 *     cdef setitem_slice_assign_scalar(self, memoryview dst, value):             # <<<<<<<<<<<<<<
 *         cdef int array[128]
 *         cdef void *tmp = NULL
 */

static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memoryview_obj *__pyx_v_self, struct __pyx_memoryview_obj *__pyx_v_dst, PyObject *__pyx_v_value) {
  int __pyx_v_array[0x80];
  void *__pyx_v_tmp;
  void *__pyx_v_item;
  __Pyx_memviewslice *__pyx_v_dst_slice;
  __Pyx_memviewslice __pyx_v_tmp_slice;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_t_3;
  int __pyx_t_4;
  char const *__pyx_t_5;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  PyObject *__pyx_t_9 = NULL;
  PyObject *__pyx_t_10 = NULL;
  PyObject *__pyx_t_11 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("setitem_slice_assign_scalar", 0);

  /* "View.MemoryView":403
 *     cdef setitem_slice_assign_scalar(self, memoryview dst, value):
 *         cdef int array[128]
 *         cdef void *tmp = NULL             # <<<<<<<<<<<<<<
 *         cdef void *item
 * 
 */
  __pyx_v_tmp = NULL;

  /* "View.MemoryView":408
 *         cdef __Pyx_memviewslice *dst_slice
 *         cdef __Pyx_memviewslice tmp_slice
 *         dst_slice = get_slice_from_memview(dst, &tmp_slice)             # <<<<<<<<<<<<<<
 * 
 *         if <size_t>self.view.itemsize > sizeof(array):
 */
  __pyx_v_dst_slice = __pyx_memoryview_get_slice_from_memoryview(__pyx_v_dst, (&__pyx_v_tmp_slice));

  /* "View.MemoryView":410
 *         dst_slice = get_slice_from_memview(dst, &tmp_slice)
 * 
 *         if <size_t>self.view.itemsize > sizeof(array):             # <<<<<<<<<<<<<<
 *             tmp = PyMem_Malloc(self.view.itemsize)
 *             if tmp == NULL:
 */
  __pyx_t_1 = ((((size_t)__pyx_v_self->view.itemsize) > (sizeof(__pyx_v_array))) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":411
 * 
 *         if <size_t>self.view.itemsize > sizeof(array):
 *             tmp = PyMem_Malloc(self.view.itemsize)             # <<<<<<<<<<<<<<
 *             if tmp == NULL:
 *                 raise MemoryError
 */
    __pyx_v_tmp = PyMem_Malloc(__pyx_v_self->view.itemsize);

    /* "View.MemoryView":412
 *         if <size_t>self.view.itemsize > sizeof(array):
 *             tmp = PyMem_Malloc(self.view.itemsize)
 *             if tmp == NULL:             # <<<<<<<<<<<<<<
 *                 raise MemoryError
 *             item = tmp
 */
    __pyx_t_1 = ((__pyx_v_tmp == NULL) != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":413
 *             tmp = PyMem_Malloc(self.view.itemsize)
 *             if tmp == NULL:
 *                 raise MemoryError             # <<<<<<<<<<<<<<
 *             item = tmp
 *         else:
 */
      PyErr_NoMemory(); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 413; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "View.MemoryView":412
 *         if <size_t>self.view.itemsize > sizeof(array):
 *             tmp = PyMem_Malloc(self.view.itemsize)
 *             if tmp == NULL:             # <<<<<<<<<<<<<<
 *                 raise MemoryError
 *             item = tmp
 */
    }

    /* "View.MemoryView":414
 *             if tmp == NULL:
 *                 raise MemoryError
 *             item = tmp             # <<<<<<<<<<<<<<
 *         else:
 *             item = <void *> array
 */
    __pyx_v_item = __pyx_v_tmp;

    /* "View.MemoryView":410
 *         dst_slice = get_slice_from_memview(dst, &tmp_slice)
 * 
 *         if <size_t>self.view.itemsize > sizeof(array):             # <<<<<<<<<<<<<<
 *             tmp = PyMem_Malloc(self.view.itemsize)
 *             if tmp == NULL:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":416
 *             item = tmp
 *         else:
 *             item = <void *> array             # <<<<<<<<<<<<<<
 * 
 *         try:
 */
  /*else*/ {
    __pyx_v_item = ((void *)__pyx_v_array);
  }
  __pyx_L3:;

  /* "View.MemoryView":418
 *             item = <void *> array
 * 
 *         try:             # <<<<<<<<<<<<<<
 *             if self.dtype_is_object:
 *                 (<PyObject **> item)[0] = <PyObject *> value
 */
  /*try:*/ {

    /* "View.MemoryView":419
 * 
 *         try:
 *             if self.dtype_is_object:             # <<<<<<<<<<<<<<
 *                 (<PyObject **> item)[0] = <PyObject *> value
 *             else:
 */
    __pyx_t_1 = (__pyx_v_self->dtype_is_object != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":420
 *         try:
 *             if self.dtype_is_object:
 *                 (<PyObject **> item)[0] = <PyObject *> value             # <<<<<<<<<<<<<<
 *             else:
 *                 self.assign_item_from_object(<char *> item, value)
 */
      (((PyObject **)__pyx_v_item)[0]) = ((PyObject *)__pyx_v_value);

      /* "View.MemoryView":419
 * 
 *         try:
 *             if self.dtype_is_object:             # <<<<<<<<<<<<<<
 *                 (<PyObject **> item)[0] = <PyObject *> value
 *             else:
 */
      goto __pyx_L8;
    }

    /* "View.MemoryView":422
 *                 (<PyObject **> item)[0] = <PyObject *> value
 *             else:
 *                 self.assign_item_from_object(<char *> item, value)             # <<<<<<<<<<<<<<
 * 
 * 
 */
    /*else*/ {
      __pyx_t_2 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->assign_item_from_object(__pyx_v_self, ((char *)__pyx_v_item), __pyx_v_value); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 422; __pyx_clineno = __LINE__; goto __pyx_L6_error;}
      __Pyx_GOTREF(__pyx_t_2);
      __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    }
    __pyx_L8:;

    /* "View.MemoryView":426
 * 
 * 
 *             if self.view.suboffsets != NULL:             # <<<<<<<<<<<<<<
 *                 assert_direct_dimensions(self.view.suboffsets, self.view.ndim)
 *             slice_assign_scalar(dst_slice, dst.view.ndim, self.view.itemsize,
 */
    __pyx_t_1 = ((__pyx_v_self->view.suboffsets != NULL) != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":427
 * 
 *             if self.view.suboffsets != NULL:
 *                 assert_direct_dimensions(self.view.suboffsets, self.view.ndim)             # <<<<<<<<<<<<<<
 *             slice_assign_scalar(dst_slice, dst.view.ndim, self.view.itemsize,
 *                                 item, self.dtype_is_object)
 */
      __pyx_t_2 = assert_direct_dimensions(__pyx_v_self->view.suboffsets, __pyx_v_self->view.ndim); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 427; __pyx_clineno = __LINE__; goto __pyx_L6_error;}
      __Pyx_GOTREF(__pyx_t_2);
      __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

      /* "View.MemoryView":426
 * 
 * 
 *             if self.view.suboffsets != NULL:             # <<<<<<<<<<<<<<
 *                 assert_direct_dimensions(self.view.suboffsets, self.view.ndim)
 *             slice_assign_scalar(dst_slice, dst.view.ndim, self.view.itemsize,
 */
    }

    /* "View.MemoryView":428
 *             if self.view.suboffsets != NULL:
 *                 assert_direct_dimensions(self.view.suboffsets, self.view.ndim)
 *             slice_assign_scalar(dst_slice, dst.view.ndim, self.view.itemsize,             # <<<<<<<<<<<<<<
 *                                 item, self.dtype_is_object)
 *         finally:
 */
    __pyx_memoryview_slice_assign_scalar(__pyx_v_dst_slice, __pyx_v_dst->view.ndim, __pyx_v_self->view.itemsize, __pyx_v_item, __pyx_v_self->dtype_is_object);
  }

  /* "View.MemoryView":431
 *                                 item, self.dtype_is_object)
 *         finally:
 *             PyMem_Free(tmp)             # <<<<<<<<<<<<<<
 * 
 *     cdef setitem_indexed(self, index, value):
 */
  /*finally:*/ {
    /*normal exit:*/{
      PyMem_Free(__pyx_v_tmp);
      goto __pyx_L7;
    }
    /*exception exit:*/{
      __pyx_L6_error:;
      __pyx_t_6 = 0; __pyx_t_7 = 0; __pyx_t_8 = 0; __pyx_t_9 = 0; __pyx_t_10 = 0; __pyx_t_11 = 0;
      __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
      if (PY_MAJOR_VERSION >= 3) __Pyx_ExceptionSwap(&__pyx_t_9, &__pyx_t_10, &__pyx_t_11);
      if ((PY_MAJOR_VERSION < 3) || unlikely(__Pyx_GetException(&__pyx_t_6, &__pyx_t_7, &__pyx_t_8) < 0)) __Pyx_ErrFetch(&__pyx_t_6, &__pyx_t_7, &__pyx_t_8);
      __Pyx_XGOTREF(__pyx_t_6);
      __Pyx_XGOTREF(__pyx_t_7);
      __Pyx_XGOTREF(__pyx_t_8);
      __Pyx_XGOTREF(__pyx_t_9);
      __Pyx_XGOTREF(__pyx_t_10);
      __Pyx_XGOTREF(__pyx_t_11);
      __pyx_t_3 = __pyx_lineno; __pyx_t_4 = __pyx_clineno; __pyx_t_5 = __pyx_filename;
      {
        PyMem_Free(__pyx_v_tmp);
      }
      if (PY_MAJOR_VERSION >= 3) {
        __Pyx_XGIVEREF(__pyx_t_9);
        __Pyx_XGIVEREF(__pyx_t_10);
        __Pyx_XGIVEREF(__pyx_t_11);
        __Pyx_ExceptionReset(__pyx_t_9, __pyx_t_10, __pyx_t_11);
      }
      __Pyx_XGIVEREF(__pyx_t_6);
      __Pyx_XGIVEREF(__pyx_t_7);
      __Pyx_XGIVEREF(__pyx_t_8);
      __Pyx_ErrRestore(__pyx_t_6, __pyx_t_7, __pyx_t_8);
      __pyx_t_6 = 0; __pyx_t_7 = 0; __pyx_t_8 = 0; __pyx_t_9 = 0; __pyx_t_10 = 0; __pyx_t_11 = 0;
      __pyx_lineno = __pyx_t_3; __pyx_clineno = __pyx_t_4; __pyx_filename = __pyx_t_5;
      goto __pyx_L1_error;
    }
    __pyx_L7:;
  }

  /* "View.MemoryView":401
 *                                  src.ndim, dst.ndim, self.dtype_is_object)
 * 
 *     cdef setitem_slice_assign_scalar(self, memoryview dst, value):             # <<<<<<<<<<<<<<
 *         cdef int array[128]
 *         cdef void *tmp = NULL
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.memoryview.setitem_slice_assign_scalar", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":433
 *             PyMem_Free(tmp)
 * 
 *     cdef setitem_indexed(self, index, value):             # <<<<<<<<<<<<<<
 *         cdef char *itemp = self.get_item_pointer(index)
 *         self.assign_item_from_object(itemp, value)
 */

static PyObject *__pyx_memoryview_setitem_indexed(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value) {
  char *__pyx_v_itemp;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  char *__pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("setitem_indexed", 0);

  /* "View.MemoryView":434
 * 
 *     cdef setitem_indexed(self, index, value):
 *         cdef char *itemp = self.get_item_pointer(index)             # <<<<<<<<<<<<<<
 *         self.assign_item_from_object(itemp, value)
 * 
 */
  __pyx_t_1 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->get_item_pointer(__pyx_v_self, __pyx_v_index); if (unlikely(__pyx_t_1 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 434; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_v_itemp = __pyx_t_1;

  /* "View.MemoryView":435
 *     cdef setitem_indexed(self, index, value):
 *         cdef char *itemp = self.get_item_pointer(index)
 *         self.assign_item_from_object(itemp, value)             # <<<<<<<<<<<<<<
 * 
 *     cdef convert_item_to_object(self, char *itemp):
 */
  __pyx_t_2 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->assign_item_from_object(__pyx_v_self, __pyx_v_itemp, __pyx_v_value); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 435; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "View.MemoryView":433
 *             PyMem_Free(tmp)
 * 
 *     cdef setitem_indexed(self, index, value):             # <<<<<<<<<<<<<<
 *         cdef char *itemp = self.get_item_pointer(index)
 *         self.assign_item_from_object(itemp, value)
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.memoryview.setitem_indexed", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":437
 *         self.assign_item_from_object(itemp, value)
 * 
 *     cdef convert_item_to_object(self, char *itemp):             # <<<<<<<<<<<<<<
 *         """Only used if instantiated manually by the user, or if Cython doesn't
 *         know how to convert the type"""
 */

static PyObject *__pyx_memoryview_convert_item_to_object(struct __pyx_memoryview_obj *__pyx_v_self, char *__pyx_v_itemp) {
  PyObject *__pyx_v_struct = NULL;
  PyObject *__pyx_v_bytesitem = 0;
  PyObject *__pyx_v_result = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  Py_ssize_t __pyx_t_8;
  PyObject *__pyx_t_9 = NULL;
  size_t __pyx_t_10;
  int __pyx_t_11;
  int __pyx_t_12;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("convert_item_to_object", 0);

  /* "View.MemoryView":440
 *         """Only used if instantiated manually by the user, or if Cython doesn't
 *         know how to convert the type"""
 *         import struct             # <<<<<<<<<<<<<<
 *         cdef bytes bytesitem
 * 
 */
  __pyx_t_1 = __Pyx_Import(__pyx_n_s_struct, 0, 0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 440; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_struct = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "View.MemoryView":443
 *         cdef bytes bytesitem
 * 
 *         bytesitem = itemp[:self.view.itemsize]             # <<<<<<<<<<<<<<
 *         try:
 *             result = struct.unpack(self.view.format, bytesitem)
 */
  __pyx_t_1 = __Pyx_PyBytes_FromStringAndSize(__pyx_v_itemp + 0, __pyx_v_self->view.itemsize - 0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 443; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_bytesitem = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "View.MemoryView":444
 * 
 *         bytesitem = itemp[:self.view.itemsize]
 *         try:             # <<<<<<<<<<<<<<
 *             result = struct.unpack(self.view.format, bytesitem)
 *         except struct.error:
 */
  {
    __Pyx_ExceptionSave(&__pyx_t_2, &__pyx_t_3, &__pyx_t_4);
    __Pyx_XGOTREF(__pyx_t_2);
    __Pyx_XGOTREF(__pyx_t_3);
    __Pyx_XGOTREF(__pyx_t_4);
    /*try:*/ {

      /* "View.MemoryView":445
 *         bytesitem = itemp[:self.view.itemsize]
 *         try:
 *             result = struct.unpack(self.view.format, bytesitem)             # <<<<<<<<<<<<<<
 *         except struct.error:
 *             raise ValueError("Unable to convert item to object")
 */
      __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_struct, __pyx_n_s_unpack); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 445; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
      __Pyx_GOTREF(__pyx_t_5);
      __pyx_t_6 = __Pyx_PyBytes_FromString(__pyx_v_self->view.format); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 445; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
      __Pyx_GOTREF(__pyx_t_6);
      __pyx_t_7 = NULL;
      __pyx_t_8 = 0;
      if (CYTHON_COMPILING_IN_CPYTHON && likely(PyMethod_Check(__pyx_t_5))) {
        __pyx_t_7 = PyMethod_GET_SELF(__pyx_t_5);
        if (likely(__pyx_t_7)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
          __Pyx_INCREF(__pyx_t_7);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_5, function);
          __pyx_t_8 = 1;
        }
      }
      __pyx_t_9 = PyTuple_New(2+__pyx_t_8); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 445; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
      __Pyx_GOTREF(__pyx_t_9);
      if (__pyx_t_7) {
        __Pyx_GIVEREF(__pyx_t_7); PyTuple_SET_ITEM(__pyx_t_9, 0, __pyx_t_7); __pyx_t_7 = NULL;
      }
      __Pyx_GIVEREF(__pyx_t_6);
      PyTuple_SET_ITEM(__pyx_t_9, 0+__pyx_t_8, __pyx_t_6);
      __Pyx_INCREF(__pyx_v_bytesitem);
      __Pyx_GIVEREF(__pyx_v_bytesitem);
      PyTuple_SET_ITEM(__pyx_t_9, 1+__pyx_t_8, __pyx_v_bytesitem);
      __pyx_t_6 = 0;
      __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_9, NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 445; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
      __Pyx_GOTREF(__pyx_t_1);
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __pyx_v_result = __pyx_t_1;
      __pyx_t_1 = 0;

      /* "View.MemoryView":444
 * 
 *         bytesitem = itemp[:self.view.itemsize]
 *         try:             # <<<<<<<<<<<<<<
 *             result = struct.unpack(self.view.format, bytesitem)
 *         except struct.error:
 */
    }

    /* "View.MemoryView":449
 *             raise ValueError("Unable to convert item to object")
 *         else:
 *             if len(self.view.format) == 1:             # <<<<<<<<<<<<<<
 *                 return result[0]
 *             return result
 */
    /*else:*/ {
      __pyx_t_10 = strlen(__pyx_v_self->view.format); 
      __pyx_t_11 = ((__pyx_t_10 == 1) != 0);
      if (__pyx_t_11) {

        /* "View.MemoryView":450
 *         else:
 *             if len(self.view.format) == 1:
 *                 return result[0]             # <<<<<<<<<<<<<<
 *             return result
 * 
 */
        __Pyx_XDECREF(__pyx_r);
        __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_result, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(__pyx_t_1 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 450; __pyx_clineno = __LINE__; goto __pyx_L5_except_error;};
        __Pyx_GOTREF(__pyx_t_1);
        __pyx_r = __pyx_t_1;
        __pyx_t_1 = 0;
        goto __pyx_L6_except_return;

        /* "View.MemoryView":449
 *             raise ValueError("Unable to convert item to object")
 *         else:
 *             if len(self.view.format) == 1:             # <<<<<<<<<<<<<<
 *                 return result[0]
 *             return result
 */
      }

      /* "View.MemoryView":451
 *             if len(self.view.format) == 1:
 *                 return result[0]
 *             return result             # <<<<<<<<<<<<<<
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):
 */
      __Pyx_XDECREF(__pyx_r);
      __Pyx_INCREF(__pyx_v_result);
      __pyx_r = __pyx_v_result;
      goto __pyx_L6_except_return;
    }
    __pyx_L3_error:;
    __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
    __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_XDECREF(__pyx_t_9); __pyx_t_9 = 0;
    __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;

    /* "View.MemoryView":446
 *         try:
 *             result = struct.unpack(self.view.format, bytesitem)
 *         except struct.error:             # <<<<<<<<<<<<<<
 *             raise ValueError("Unable to convert item to object")
 *         else:
 */
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_struct, __pyx_n_s_error); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 446; __pyx_clineno = __LINE__; goto __pyx_L5_except_error;}
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_12 = PyErr_ExceptionMatches(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    if (__pyx_t_12) {
      __Pyx_AddTraceback("View.MemoryView.memoryview.convert_item_to_object", __pyx_clineno, __pyx_lineno, __pyx_filename);
      if (__Pyx_GetException(&__pyx_t_1, &__pyx_t_5, &__pyx_t_9) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 446; __pyx_clineno = __LINE__; goto __pyx_L5_except_error;}
      __Pyx_GOTREF(__pyx_t_1);
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_GOTREF(__pyx_t_9);

      /* "View.MemoryView":447
 *             result = struct.unpack(self.view.format, bytesitem)
 *         except struct.error:
 *             raise ValueError("Unable to convert item to object")             # <<<<<<<<<<<<<<
 *         else:
 *             if len(self.view.format) == 1:
 */
      __pyx_t_6 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__18, NULL); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 447; __pyx_clineno = __LINE__; goto __pyx_L5_except_error;}
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_Raise(__pyx_t_6, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
      {__pyx_filename = __pyx_f[1]; __pyx_lineno = 447; __pyx_clineno = __LINE__; goto __pyx_L5_except_error;}
    }
    goto __pyx_L5_except_error;
    __pyx_L5_except_error:;

    /* "View.MemoryView":444
 * 
 *         bytesitem = itemp[:self.view.itemsize]
 *         try:             # <<<<<<<<<<<<<<
 *             result = struct.unpack(self.view.format, bytesitem)
 *         except struct.error:
 */
    __Pyx_XGIVEREF(__pyx_t_2);
    __Pyx_XGIVEREF(__pyx_t_3);
    __Pyx_XGIVEREF(__pyx_t_4);
    __Pyx_ExceptionReset(__pyx_t_2, __pyx_t_3, __pyx_t_4);
    goto __pyx_L1_error;
    __pyx_L6_except_return:;
    __Pyx_XGIVEREF(__pyx_t_2);
    __Pyx_XGIVEREF(__pyx_t_3);
    __Pyx_XGIVEREF(__pyx_t_4);
    __Pyx_ExceptionReset(__pyx_t_2, __pyx_t_3, __pyx_t_4);
    goto __pyx_L0;
  }

  /* "View.MemoryView":437
 *         self.assign_item_from_object(itemp, value)
 * 
 *     cdef convert_item_to_object(self, char *itemp):             # <<<<<<<<<<<<<<
 *         """Only used if instantiated manually by the user, or if Cython doesn't
 *         know how to convert the type"""
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_AddTraceback("View.MemoryView.memoryview.convert_item_to_object", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_struct);
  __Pyx_XDECREF(__pyx_v_bytesitem);
  __Pyx_XDECREF(__pyx_v_result);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":453
 *             return result
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):             # <<<<<<<<<<<<<<
 *         """Only used if instantiated manually by the user, or if Cython doesn't
 *         know how to convert the type"""
 */

static PyObject *__pyx_memoryview_assign_item_from_object(struct __pyx_memoryview_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value) {
  PyObject *__pyx_v_struct = NULL;
  char __pyx_v_c;
  PyObject *__pyx_v_bytesvalue = 0;
  Py_ssize_t __pyx_v_i;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_t_3;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  Py_ssize_t __pyx_t_7;
  PyObject *__pyx_t_8 = NULL;
  PyObject *__pyx_t_9 = NULL;
  char *__pyx_t_10;
  char *__pyx_t_11;
  char *__pyx_t_12;
  char *__pyx_t_13;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("assign_item_from_object", 0);

  /* "View.MemoryView":456
 *         """Only used if instantiated manually by the user, or if Cython doesn't
 *         know how to convert the type"""
 *         import struct             # <<<<<<<<<<<<<<
 *         cdef char c
 *         cdef bytes bytesvalue
 */
  __pyx_t_1 = __Pyx_Import(__pyx_n_s_struct, 0, 0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 456; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_struct = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "View.MemoryView":461
 *         cdef Py_ssize_t i
 * 
 *         if isinstance(value, tuple):             # <<<<<<<<<<<<<<
 *             bytesvalue = struct.pack(self.view.format, *value)
 *         else:
 */
  __pyx_t_2 = PyTuple_Check(__pyx_v_value); 
  __pyx_t_3 = (__pyx_t_2 != 0);
  if (__pyx_t_3) {

    /* "View.MemoryView":462
 * 
 *         if isinstance(value, tuple):
 *             bytesvalue = struct.pack(self.view.format, *value)             # <<<<<<<<<<<<<<
 *         else:
 *             bytesvalue = struct.pack(self.view.format, value)
 */
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_struct, __pyx_n_s_pack); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 462; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_4 = __Pyx_PyBytes_FromString(__pyx_v_self->view.format); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 462; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 462; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_4);
    __pyx_t_4 = 0;
    __pyx_t_4 = PySequence_Tuple(__pyx_v_value); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 462; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_6 = PyNumber_Add(__pyx_t_5, __pyx_t_4); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 462; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_1, __pyx_t_6, NULL); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 462; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (!(likely(PyBytes_CheckExact(__pyx_t_4))||((__pyx_t_4) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "bytes", Py_TYPE(__pyx_t_4)->tp_name), 0))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 462; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_v_bytesvalue = ((PyObject*)__pyx_t_4);
    __pyx_t_4 = 0;

    /* "View.MemoryView":461
 *         cdef Py_ssize_t i
 * 
 *         if isinstance(value, tuple):             # <<<<<<<<<<<<<<
 *             bytesvalue = struct.pack(self.view.format, *value)
 *         else:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":464
 *             bytesvalue = struct.pack(self.view.format, *value)
 *         else:
 *             bytesvalue = struct.pack(self.view.format, value)             # <<<<<<<<<<<<<<
 * 
 *         for i, c in enumerate(bytesvalue):
 */
  /*else*/ {
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_struct, __pyx_n_s_pack); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 464; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_1 = __Pyx_PyBytes_FromString(__pyx_v_self->view.format); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 464; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_5 = NULL;
    __pyx_t_7 = 0;
    if (CYTHON_COMPILING_IN_CPYTHON && likely(PyMethod_Check(__pyx_t_6))) {
      __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_6);
      if (likely(__pyx_t_5)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_6);
        __Pyx_INCREF(__pyx_t_5);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_6, function);
        __pyx_t_7 = 1;
      }
    }
    __pyx_t_8 = PyTuple_New(2+__pyx_t_7); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 464; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_8);
    if (__pyx_t_5) {
      __Pyx_GIVEREF(__pyx_t_5); PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_t_5); __pyx_t_5 = NULL;
    }
    __Pyx_GIVEREF(__pyx_t_1);
    PyTuple_SET_ITEM(__pyx_t_8, 0+__pyx_t_7, __pyx_t_1);
    __Pyx_INCREF(__pyx_v_value);
    __Pyx_GIVEREF(__pyx_v_value);
    PyTuple_SET_ITEM(__pyx_t_8, 1+__pyx_t_7, __pyx_v_value);
    __pyx_t_1 = 0;
    __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_6, __pyx_t_8, NULL); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 464; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (!(likely(PyBytes_CheckExact(__pyx_t_4))||((__pyx_t_4) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "bytes", Py_TYPE(__pyx_t_4)->tp_name), 0))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 464; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_v_bytesvalue = ((PyObject*)__pyx_t_4);
    __pyx_t_4 = 0;
  }
  __pyx_L3:;

  /* "View.MemoryView":466
 *             bytesvalue = struct.pack(self.view.format, value)
 * 
 *         for i, c in enumerate(bytesvalue):             # <<<<<<<<<<<<<<
 *             itemp[i] = c
 * 
 */
  __pyx_t_7 = 0;
  if (unlikely(__pyx_v_bytesvalue == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' is not iterable");
    {__pyx_filename = __pyx_f[1]; __pyx_lineno = 466; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  __Pyx_INCREF(__pyx_v_bytesvalue);
  __pyx_t_9 = __pyx_v_bytesvalue;
  __pyx_t_11 = PyBytes_AS_STRING(__pyx_t_9);
  __pyx_t_12 = (__pyx_t_11 + PyBytes_GET_SIZE(__pyx_t_9));
  for (__pyx_t_13 = __pyx_t_11; __pyx_t_13 < __pyx_t_12; __pyx_t_13++) {
    __pyx_t_10 = __pyx_t_13;
    __pyx_v_c = (__pyx_t_10[0]);

    /* "View.MemoryView":467
 * 
 *         for i, c in enumerate(bytesvalue):
 *             itemp[i] = c             # <<<<<<<<<<<<<<
 * 
 *     @cname('getbuffer')
 */
    __pyx_v_i = __pyx_t_7;

    /* "View.MemoryView":466
 *             bytesvalue = struct.pack(self.view.format, value)
 * 
 *         for i, c in enumerate(bytesvalue):             # <<<<<<<<<<<<<<
 *             itemp[i] = c
 * 
 */
    __pyx_t_7 = (__pyx_t_7 + 1);

    /* "View.MemoryView":467
 * 
 *         for i, c in enumerate(bytesvalue):
 *             itemp[i] = c             # <<<<<<<<<<<<<<
 * 
 *     @cname('getbuffer')
 */
    (__pyx_v_itemp[__pyx_v_i]) = __pyx_v_c;
  }
  __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;

  /* "View.MemoryView":453
 *             return result
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):             # <<<<<<<<<<<<<<
 *         """Only used if instantiated manually by the user, or if Cython doesn't
 *         know how to convert the type"""
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_AddTraceback("View.MemoryView.memoryview.assign_item_from_object", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_struct);
  __Pyx_XDECREF(__pyx_v_bytesvalue);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":470
 * 
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):             # <<<<<<<<<<<<<<
 *         if flags & PyBUF_STRIDES:
 *             info.shape = self.view.shape
 */

/* Python wrapper */
static CYTHON_UNUSED int __pyx_memoryview_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
static CYTHON_UNUSED int __pyx_memoryview_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getbuffer__ (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbuffer__(((struct __pyx_memoryview_obj *)__pyx_v_self), ((Py_buffer *)__pyx_v_info), ((int)__pyx_v_flags));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbuffer__(struct __pyx_memoryview_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  Py_ssize_t *__pyx_t_2;
  char *__pyx_t_3;
  void *__pyx_t_4;
  int __pyx_t_5;
  Py_ssize_t __pyx_t_6;
  __Pyx_RefNannySetupContext("__getbuffer__", 0);
  if (__pyx_v_info != NULL) {
    __pyx_v_info->obj = Py_None; __Pyx_INCREF(Py_None);
    __Pyx_GIVEREF(__pyx_v_info->obj);
  }

  /* "View.MemoryView":471
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         if flags & PyBUF_STRIDES:             # <<<<<<<<<<<<<<
 *             info.shape = self.view.shape
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_flags & PyBUF_STRIDES) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":472
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         if flags & PyBUF_STRIDES:
 *             info.shape = self.view.shape             # <<<<<<<<<<<<<<
 *         else:
 *             info.shape = NULL
 */
    __pyx_t_2 = __pyx_v_self->view.shape;
    __pyx_v_info->shape = __pyx_t_2;

    /* "View.MemoryView":471
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         if flags & PyBUF_STRIDES:             # <<<<<<<<<<<<<<
 *             info.shape = self.view.shape
 *         else:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":474
 *             info.shape = self.view.shape
 *         else:
 *             info.shape = NULL             # <<<<<<<<<<<<<<
 * 
 *         if flags & PyBUF_STRIDES:
 */
  /*else*/ {
    __pyx_v_info->shape = NULL;
  }
  __pyx_L3:;

  /* "View.MemoryView":476
 *             info.shape = NULL
 * 
 *         if flags & PyBUF_STRIDES:             # <<<<<<<<<<<<<<
 *             info.strides = self.view.strides
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_flags & PyBUF_STRIDES) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":477
 * 
 *         if flags & PyBUF_STRIDES:
 *             info.strides = self.view.strides             # <<<<<<<<<<<<<<
 *         else:
 *             info.strides = NULL
 */
    __pyx_t_2 = __pyx_v_self->view.strides;
    __pyx_v_info->strides = __pyx_t_2;

    /* "View.MemoryView":476
 *             info.shape = NULL
 * 
 *         if flags & PyBUF_STRIDES:             # <<<<<<<<<<<<<<
 *             info.strides = self.view.strides
 *         else:
 */
    goto __pyx_L4;
  }

  /* "View.MemoryView":479
 *             info.strides = self.view.strides
 *         else:
 *             info.strides = NULL             # <<<<<<<<<<<<<<
 * 
 *         if flags & PyBUF_INDIRECT:
 */
  /*else*/ {
    __pyx_v_info->strides = NULL;
  }
  __pyx_L4:;

  /* "View.MemoryView":481
 *             info.strides = NULL
 * 
 *         if flags & PyBUF_INDIRECT:             # <<<<<<<<<<<<<<
 *             info.suboffsets = self.view.suboffsets
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_flags & PyBUF_INDIRECT) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":482
 * 
 *         if flags & PyBUF_INDIRECT:
 *             info.suboffsets = self.view.suboffsets             # <<<<<<<<<<<<<<
 *         else:
 *             info.suboffsets = NULL
 */
    __pyx_t_2 = __pyx_v_self->view.suboffsets;
    __pyx_v_info->suboffsets = __pyx_t_2;

    /* "View.MemoryView":481
 *             info.strides = NULL
 * 
 *         if flags & PyBUF_INDIRECT:             # <<<<<<<<<<<<<<
 *             info.suboffsets = self.view.suboffsets
 *         else:
 */
    goto __pyx_L5;
  }

  /* "View.MemoryView":484
 *             info.suboffsets = self.view.suboffsets
 *         else:
 *             info.suboffsets = NULL             # <<<<<<<<<<<<<<
 * 
 *         if flags & PyBUF_FORMAT:
 */
  /*else*/ {
    __pyx_v_info->suboffsets = NULL;
  }
  __pyx_L5:;

  /* "View.MemoryView":486
 *             info.suboffsets = NULL
 * 
 *         if flags & PyBUF_FORMAT:             # <<<<<<<<<<<<<<
 *             info.format = self.view.format
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_flags & PyBUF_FORMAT) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":487
 * 
 *         if flags & PyBUF_FORMAT:
 *             info.format = self.view.format             # <<<<<<<<<<<<<<
 *         else:
 *             info.format = NULL
 */
    __pyx_t_3 = __pyx_v_self->view.format;
    __pyx_v_info->format = __pyx_t_3;

    /* "View.MemoryView":486
 *             info.suboffsets = NULL
 * 
 *         if flags & PyBUF_FORMAT:             # <<<<<<<<<<<<<<
 *             info.format = self.view.format
 *         else:
 */
    goto __pyx_L6;
  }

  /* "View.MemoryView":489
 *             info.format = self.view.format
 *         else:
 *             info.format = NULL             # <<<<<<<<<<<<<<
 * 
 *         info.buf = self.view.buf
 */
  /*else*/ {
    __pyx_v_info->format = NULL;
  }
  __pyx_L6:;

  /* "View.MemoryView":491
 *             info.format = NULL
 * 
 *         info.buf = self.view.buf             # <<<<<<<<<<<<<<
 *         info.ndim = self.view.ndim
 *         info.itemsize = self.view.itemsize
 */
  __pyx_t_4 = __pyx_v_self->view.buf;
  __pyx_v_info->buf = __pyx_t_4;

  /* "View.MemoryView":492
 * 
 *         info.buf = self.view.buf
 *         info.ndim = self.view.ndim             # <<<<<<<<<<<<<<
 *         info.itemsize = self.view.itemsize
 *         info.len = self.view.len
 */
  __pyx_t_5 = __pyx_v_self->view.ndim;
  __pyx_v_info->ndim = __pyx_t_5;

  /* "View.MemoryView":493
 *         info.buf = self.view.buf
 *         info.ndim = self.view.ndim
 *         info.itemsize = self.view.itemsize             # <<<<<<<<<<<<<<
 *         info.len = self.view.len
 *         info.readonly = 0
 */
  __pyx_t_6 = __pyx_v_self->view.itemsize;
  __pyx_v_info->itemsize = __pyx_t_6;

  /* "View.MemoryView":494
 *         info.ndim = self.view.ndim
 *         info.itemsize = self.view.itemsize
 *         info.len = self.view.len             # <<<<<<<<<<<<<<
 *         info.readonly = 0
 *         info.obj = self
 */
  __pyx_t_6 = __pyx_v_self->view.len;
  __pyx_v_info->len = __pyx_t_6;

  /* "View.MemoryView":495
 *         info.itemsize = self.view.itemsize
 *         info.len = self.view.len
 *         info.readonly = 0             # <<<<<<<<<<<<<<
 *         info.obj = self
 * 
 */
  __pyx_v_info->readonly = 0;

  /* "View.MemoryView":496
 *         info.len = self.view.len
 *         info.readonly = 0
 *         info.obj = self             # <<<<<<<<<<<<<<
 * 
 *     __pyx_getbuffer = capsule(<void *> &__pyx_memoryview_getbuffer, "getbuffer(obj, view, flags)")
 */
  __Pyx_INCREF(((PyObject *)__pyx_v_self));
  __Pyx_GIVEREF(((PyObject *)__pyx_v_self));
  __Pyx_GOTREF(__pyx_v_info->obj);
  __Pyx_DECREF(__pyx_v_info->obj);
  __pyx_v_info->obj = ((PyObject *)__pyx_v_self);

  /* "View.MemoryView":470
 * 
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):             # <<<<<<<<<<<<<<
 *         if flags & PyBUF_STRIDES:
 *             info.shape = self.view.shape
 */

  /* function exit code */
  __pyx_r = 0;
  if (__pyx_v_info != NULL && __pyx_v_info->obj == Py_None) {
    __Pyx_GOTREF(Py_None);
    __Pyx_DECREF(Py_None); __pyx_v_info->obj = NULL;
  }
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":503
 *     property T:
 *         @cname('__pyx_memoryview_transpose')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             cdef _memoryviewslice result = memoryview_copy(self)
 *             transpose_memslice(&result.from_slice)
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_transpose(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_transpose(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_1T___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_1T___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  struct __pyx_memoryviewslice_obj *__pyx_v_result = 0;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":504
 *         @cname('__pyx_memoryview_transpose')
 *         def __get__(self):
 *             cdef _memoryviewslice result = memoryview_copy(self)             # <<<<<<<<<<<<<<
 *             transpose_memslice(&result.from_slice)
 *             return result
 */
  __pyx_t_1 = __pyx_memoryview_copy_object(__pyx_v_self); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 504; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_memoryviewslice_type))))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 504; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_v_result = ((struct __pyx_memoryviewslice_obj *)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "View.MemoryView":505
 *         def __get__(self):
 *             cdef _memoryviewslice result = memoryview_copy(self)
 *             transpose_memslice(&result.from_slice)             # <<<<<<<<<<<<<<
 *             return result
 * 
 */
  __pyx_t_2 = __pyx_memslice_transpose((&__pyx_v_result->from_slice)); if (unlikely(__pyx_t_2 == 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 505; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  /* "View.MemoryView":506
 *             cdef _memoryviewslice result = memoryview_copy(self)
 *             transpose_memslice(&result.from_slice)
 *             return result             # <<<<<<<<<<<<<<
 * 
 *     property base:
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(((PyObject *)__pyx_v_result));
  __pyx_r = ((PyObject *)__pyx_v_result);
  goto __pyx_L0;

  /* "View.MemoryView":503
 *     property T:
 *         @cname('__pyx_memoryview_transpose')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             cdef _memoryviewslice result = memoryview_copy(self)
 *             transpose_memslice(&result.from_slice)
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview.T.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_result);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":510
 *     property base:
 *         @cname('__pyx_memoryview__get__base')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             return self.obj
 * 
 */

/* Python wrapper */
static PyObject *__pyx_memoryview__get__base(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview__get__base(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_4base___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4base___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":511
 *         @cname('__pyx_memoryview__get__base')
 *         def __get__(self):
 *             return self.obj             # <<<<<<<<<<<<<<
 * 
 *     property shape:
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_self->obj);
  __pyx_r = __pyx_v_self->obj;
  goto __pyx_L0;

  /* "View.MemoryView":510
 *     property base:
 *         @cname('__pyx_memoryview__get__base')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             return self.obj
 * 
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":515
 *     property shape:
 *         @cname('__pyx_memoryview_get_shape')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             return tuple([length for length in self.view.shape[:self.view.ndim]])
 * 
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_get_shape(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_shape(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_5shape___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_5shape___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  Py_ssize_t __pyx_v_length;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  Py_ssize_t *__pyx_t_2;
  Py_ssize_t *__pyx_t_3;
  Py_ssize_t *__pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":516
 *         @cname('__pyx_memoryview_get_shape')
 *         def __get__(self):
 *             return tuple([length for length in self.view.shape[:self.view.ndim]])             # <<<<<<<<<<<<<<
 * 
 *     property strides:
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 516; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_3 = (__pyx_v_self->view.shape + __pyx_v_self->view.ndim);
  for (__pyx_t_4 = __pyx_v_self->view.shape; __pyx_t_4 < __pyx_t_3; __pyx_t_4++) {
    __pyx_t_2 = __pyx_t_4;
    __pyx_v_length = (__pyx_t_2[0]);
    __pyx_t_5 = PyInt_FromSsize_t(__pyx_v_length); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 516; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    if (unlikely(__Pyx_ListComp_Append(__pyx_t_1, (PyObject*)__pyx_t_5))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 516; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  }
  __pyx_t_5 = PyList_AsTuple(((PyObject*)__pyx_t_1)); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 516; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_r = __pyx_t_5;
  __pyx_t_5 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":515
 *     property shape:
 *         @cname('__pyx_memoryview_get_shape')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             return tuple([length for length in self.view.shape[:self.view.ndim]])
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.memoryview.shape.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":520
 *     property strides:
 *         @cname('__pyx_memoryview_get_strides')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             if self.view.strides == NULL:
 * 
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_get_strides(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_strides(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_7strides___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_7strides___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  Py_ssize_t __pyx_v_stride;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  Py_ssize_t *__pyx_t_3;
  Py_ssize_t *__pyx_t_4;
  Py_ssize_t *__pyx_t_5;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":521
 *         @cname('__pyx_memoryview_get_strides')
 *         def __get__(self):
 *             if self.view.strides == NULL:             # <<<<<<<<<<<<<<
 * 
 *                 raise ValueError("Buffer view does not expose strides")
 */
  __pyx_t_1 = ((__pyx_v_self->view.strides == NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":523
 *             if self.view.strides == NULL:
 * 
 *                 raise ValueError("Buffer view does not expose strides")             # <<<<<<<<<<<<<<
 * 
 *             return tuple([stride for stride in self.view.strides[:self.view.ndim]])
 */
    __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__19, NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 523; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_Raise(__pyx_t_2, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    {__pyx_filename = __pyx_f[1]; __pyx_lineno = 523; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":521
 *         @cname('__pyx_memoryview_get_strides')
 *         def __get__(self):
 *             if self.view.strides == NULL:             # <<<<<<<<<<<<<<
 * 
 *                 raise ValueError("Buffer view does not expose strides")
 */
  }

  /* "View.MemoryView":525
 *                 raise ValueError("Buffer view does not expose strides")
 * 
 *             return tuple([stride for stride in self.view.strides[:self.view.ndim]])             # <<<<<<<<<<<<<<
 * 
 *     property suboffsets:
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_2 = PyList_New(0); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 525; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_4 = (__pyx_v_self->view.strides + __pyx_v_self->view.ndim);
  for (__pyx_t_5 = __pyx_v_self->view.strides; __pyx_t_5 < __pyx_t_4; __pyx_t_5++) {
    __pyx_t_3 = __pyx_t_5;
    __pyx_v_stride = (__pyx_t_3[0]);
    __pyx_t_6 = PyInt_FromSsize_t(__pyx_v_stride); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 525; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_6);
    if (unlikely(__Pyx_ListComp_Append(__pyx_t_2, (PyObject*)__pyx_t_6))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 525; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  }
  __pyx_t_6 = PyList_AsTuple(((PyObject*)__pyx_t_2)); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 525; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_r = __pyx_t_6;
  __pyx_t_6 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":520
 *     property strides:
 *         @cname('__pyx_memoryview_get_strides')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             if self.view.strides == NULL:
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_AddTraceback("View.MemoryView.memoryview.strides.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":529
 *     property suboffsets:
 *         @cname('__pyx_memoryview_get_suboffsets')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             if self.view.suboffsets == NULL:
 *                 return (-1,) * self.view.ndim
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_get_suboffsets(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_suboffsets(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_10suboffsets___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_10suboffsets___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  Py_ssize_t __pyx_v_suboffset;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  Py_ssize_t *__pyx_t_4;
  Py_ssize_t *__pyx_t_5;
  Py_ssize_t *__pyx_t_6;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":530
 *         @cname('__pyx_memoryview_get_suboffsets')
 *         def __get__(self):
 *             if self.view.suboffsets == NULL:             # <<<<<<<<<<<<<<
 *                 return (-1,) * self.view.ndim
 * 
 */
  __pyx_t_1 = ((__pyx_v_self->view.suboffsets == NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":531
 *         def __get__(self):
 *             if self.view.suboffsets == NULL:
 *                 return (-1,) * self.view.ndim             # <<<<<<<<<<<<<<
 * 
 *             return tuple([suboffset for suboffset in self.view.suboffsets[:self.view.ndim]])
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_self->view.ndim); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 531; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = PyNumber_Multiply(__pyx_tuple__20, __pyx_t_2); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 531; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_r = __pyx_t_3;
    __pyx_t_3 = 0;
    goto __pyx_L0;

    /* "View.MemoryView":530
 *         @cname('__pyx_memoryview_get_suboffsets')
 *         def __get__(self):
 *             if self.view.suboffsets == NULL:             # <<<<<<<<<<<<<<
 *                 return (-1,) * self.view.ndim
 * 
 */
  }

  /* "View.MemoryView":533
 *                 return (-1,) * self.view.ndim
 * 
 *             return tuple([suboffset for suboffset in self.view.suboffsets[:self.view.ndim]])             # <<<<<<<<<<<<<<
 * 
 *     property ndim:
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_3 = PyList_New(0); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 533; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_5 = (__pyx_v_self->view.suboffsets + __pyx_v_self->view.ndim);
  for (__pyx_t_6 = __pyx_v_self->view.suboffsets; __pyx_t_6 < __pyx_t_5; __pyx_t_6++) {
    __pyx_t_4 = __pyx_t_6;
    __pyx_v_suboffset = (__pyx_t_4[0]);
    __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_suboffset); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 533; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    if (unlikely(__Pyx_ListComp_Append(__pyx_t_3, (PyObject*)__pyx_t_2))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 533; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  }
  __pyx_t_2 = PyList_AsTuple(((PyObject*)__pyx_t_3)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 533; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":529
 *     property suboffsets:
 *         @cname('__pyx_memoryview_get_suboffsets')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             if self.view.suboffsets == NULL:
 *                 return (-1,) * self.view.ndim
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview.suboffsets.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":537
 *     property ndim:
 *         @cname('__pyx_memoryview_get_ndim')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             return self.view.ndim
 * 
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_get_ndim(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_ndim(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_4ndim___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4ndim___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":538
 *         @cname('__pyx_memoryview_get_ndim')
 *         def __get__(self):
 *             return self.view.ndim             # <<<<<<<<<<<<<<
 * 
 *     property itemsize:
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_self->view.ndim); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 538; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":537
 *     property ndim:
 *         @cname('__pyx_memoryview_get_ndim')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             return self.view.ndim
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview.ndim.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":542
 *     property itemsize:
 *         @cname('__pyx_memoryview_get_itemsize')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             return self.view.itemsize
 * 
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_get_itemsize(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_itemsize(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_8itemsize___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_8itemsize___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":543
 *         @cname('__pyx_memoryview_get_itemsize')
 *         def __get__(self):
 *             return self.view.itemsize             # <<<<<<<<<<<<<<
 * 
 *     property nbytes:
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = PyInt_FromSsize_t(__pyx_v_self->view.itemsize); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 543; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":542
 *     property itemsize:
 *         @cname('__pyx_memoryview_get_itemsize')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             return self.view.itemsize
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview.itemsize.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":547
 *     property nbytes:
 *         @cname('__pyx_memoryview_get_nbytes')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             return self.size * self.view.itemsize
 * 
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_get_nbytes(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_nbytes(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_6nbytes___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_6nbytes___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":548
 *         @cname('__pyx_memoryview_get_nbytes')
 *         def __get__(self):
 *             return self.size * self.view.itemsize             # <<<<<<<<<<<<<<
 * 
 *     property size:
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_size); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 548; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_self->view.itemsize); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 548; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = PyNumber_Multiply(__pyx_t_1, __pyx_t_2); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 548; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_r = __pyx_t_3;
  __pyx_t_3 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":547
 *     property nbytes:
 *         @cname('__pyx_memoryview_get_nbytes')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             return self.size * self.view.itemsize
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview.nbytes.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":552
 *     property size:
 *         @cname('__pyx_memoryview_get_size')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             if self._size is None:
 *                 result = 1
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_get_size(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview_get_size(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_4size___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4size___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_v_result = NULL;
  PyObject *__pyx_v_length = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  Py_ssize_t *__pyx_t_3;
  Py_ssize_t *__pyx_t_4;
  Py_ssize_t *__pyx_t_5;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":553
 *         @cname('__pyx_memoryview_get_size')
 *         def __get__(self):
 *             if self._size is None:             # <<<<<<<<<<<<<<
 *                 result = 1
 * 
 */
  __pyx_t_1 = (__pyx_v_self->_size == Py_None);
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":554
 *         def __get__(self):
 *             if self._size is None:
 *                 result = 1             # <<<<<<<<<<<<<<
 * 
 *                 for length in self.view.shape[:self.view.ndim]:
 */
    __Pyx_INCREF(__pyx_int_1);
    __pyx_v_result = __pyx_int_1;

    /* "View.MemoryView":556
 *                 result = 1
 * 
 *                 for length in self.view.shape[:self.view.ndim]:             # <<<<<<<<<<<<<<
 *                     result *= length
 * 
 */
    __pyx_t_4 = (__pyx_v_self->view.shape + __pyx_v_self->view.ndim);
    for (__pyx_t_5 = __pyx_v_self->view.shape; __pyx_t_5 < __pyx_t_4; __pyx_t_5++) {
      __pyx_t_3 = __pyx_t_5;
      __pyx_t_6 = PyInt_FromSsize_t((__pyx_t_3[0])); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 556; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_XDECREF_SET(__pyx_v_length, __pyx_t_6);
      __pyx_t_6 = 0;

      /* "View.MemoryView":557
 * 
 *                 for length in self.view.shape[:self.view.ndim]:
 *                     result *= length             # <<<<<<<<<<<<<<
 * 
 *                 self._size = result
 */
      __pyx_t_6 = PyNumber_InPlaceMultiply(__pyx_v_result, __pyx_v_length); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 557; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_DECREF_SET(__pyx_v_result, __pyx_t_6);
      __pyx_t_6 = 0;
    }

    /* "View.MemoryView":559
 *                     result *= length
 * 
 *                 self._size = result             # <<<<<<<<<<<<<<
 * 
 *             return self._size
 */
    __Pyx_INCREF(__pyx_v_result);
    __Pyx_GIVEREF(__pyx_v_result);
    __Pyx_GOTREF(__pyx_v_self->_size);
    __Pyx_DECREF(__pyx_v_self->_size);
    __pyx_v_self->_size = __pyx_v_result;

    /* "View.MemoryView":553
 *         @cname('__pyx_memoryview_get_size')
 *         def __get__(self):
 *             if self._size is None:             # <<<<<<<<<<<<<<
 *                 result = 1
 * 
 */
  }

  /* "View.MemoryView":561
 *                 self._size = result
 * 
 *             return self._size             # <<<<<<<<<<<<<<
 * 
 *     def __len__(self):
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_self->_size);
  __pyx_r = __pyx_v_self->_size;
  goto __pyx_L0;

  /* "View.MemoryView":552
 *     property size:
 *         @cname('__pyx_memoryview_get_size')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             if self._size is None:
 *                 result = 1
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_AddTraceback("View.MemoryView.memoryview.size.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_result);
  __Pyx_XDECREF(__pyx_v_length);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":563
 *             return self._size
 * 
 *     def __len__(self):             # <<<<<<<<<<<<<<
 *         if self.view.ndim >= 1:
 *             return self.view.shape[0]
 */

/* Python wrapper */
static Py_ssize_t __pyx_memoryview___len__(PyObject *__pyx_v_self); /*proto*/
static Py_ssize_t __pyx_memoryview___len__(PyObject *__pyx_v_self) {
  Py_ssize_t __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__len__ (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_10__len__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static Py_ssize_t __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_10__len__(struct __pyx_memoryview_obj *__pyx_v_self) {
  Py_ssize_t __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  __Pyx_RefNannySetupContext("__len__", 0);

  /* "View.MemoryView":564
 * 
 *     def __len__(self):
 *         if self.view.ndim >= 1:             # <<<<<<<<<<<<<<
 *             return self.view.shape[0]
 * 
 */
  __pyx_t_1 = ((__pyx_v_self->view.ndim >= 1) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":565
 *     def __len__(self):
 *         if self.view.ndim >= 1:
 *             return self.view.shape[0]             # <<<<<<<<<<<<<<
 * 
 *         return 0
 */
    __pyx_r = (__pyx_v_self->view.shape[0]);
    goto __pyx_L0;

    /* "View.MemoryView":564
 * 
 *     def __len__(self):
 *         if self.view.ndim >= 1:             # <<<<<<<<<<<<<<
 *             return self.view.shape[0]
 * 
 */
  }

  /* "View.MemoryView":567
 *             return self.view.shape[0]
 * 
 *         return 0             # <<<<<<<<<<<<<<
 * 
 *     def __repr__(self):
 */
  __pyx_r = 0;
  goto __pyx_L0;

  /* "View.MemoryView":563
 *             return self._size
 * 
 *     def __len__(self):             # <<<<<<<<<<<<<<
 *         if self.view.ndim >= 1:
 *             return self.view.shape[0]
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":569
 *         return 0
 * 
 *     def __repr__(self):             # <<<<<<<<<<<<<<
 *         return "<MemoryView of %r at 0x%x>" % (self.base.__class__.__name__,
 *                                                id(self))
 */

/* Python wrapper */
static PyObject *__pyx_memoryview___repr__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview___repr__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__repr__ (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_12__repr__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_12__repr__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__repr__", 0);

  /* "View.MemoryView":570
 * 
 *     def __repr__(self):
 *         return "<MemoryView of %r at 0x%x>" % (self.base.__class__.__name__,             # <<<<<<<<<<<<<<
 *                                                id(self))
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_base); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 570; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_class); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 570; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_name_2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 570; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "View.MemoryView":571
 *     def __repr__(self):
 *         return "<MemoryView of %r at 0x%x>" % (self.base.__class__.__name__,
 *                                                id(self))             # <<<<<<<<<<<<<<
 * 
 *     def __str__(self):
 */
  __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 571; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_INCREF(((PyObject *)__pyx_v_self));
  __Pyx_GIVEREF(((PyObject *)__pyx_v_self));
  PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_v_self));
  __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_id, __pyx_t_2, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 571; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "View.MemoryView":570
 * 
 *     def __repr__(self):
 *         return "<MemoryView of %r at 0x%x>" % (self.base.__class__.__name__,             # <<<<<<<<<<<<<<
 *                                                id(self))
 * 
 */
  __pyx_t_2 = PyTuple_New(2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 570; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_3);
  PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_3);
  __pyx_t_1 = 0;
  __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_PyString_Format(__pyx_kp_s_MemoryView_of_r_at_0x_x, __pyx_t_2); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 570; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_r = __pyx_t_3;
  __pyx_t_3 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":569
 *         return 0
 * 
 *     def __repr__(self):             # <<<<<<<<<<<<<<
 *         return "<MemoryView of %r at 0x%x>" % (self.base.__class__.__name__,
 *                                                id(self))
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview.__repr__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":573
 *                                                id(self))
 * 
 *     def __str__(self):             # <<<<<<<<<<<<<<
 *         return "<MemoryView of %r object>" % (self.base.__class__.__name__,)
 * 
 */

/* Python wrapper */
static PyObject *__pyx_memoryview___str__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview___str__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__str__ (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_14__str__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_14__str__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__str__", 0);

  /* "View.MemoryView":574
 * 
 *     def __str__(self):
 *         return "<MemoryView of %r object>" % (self.base.__class__.__name__,)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_base); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 574; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_class); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 574; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_name_2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 574; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 574; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_1);
  __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyString_Format(__pyx_kp_s_MemoryView_of_r_object, __pyx_t_2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 574; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":573
 *                                                id(self))
 * 
 *     def __str__(self):             # <<<<<<<<<<<<<<
 *         return "<MemoryView of %r object>" % (self.base.__class__.__name__,)
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.memoryview.__str__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":577
 * 
 * 
 *     def is_c_contig(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice *mslice
 *         cdef __Pyx_memviewslice tmp
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_is_c_contig(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_memoryview_is_c_contig(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("is_c_contig (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_16is_c_contig(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_16is_c_contig(struct __pyx_memoryview_obj *__pyx_v_self) {
  __Pyx_memviewslice *__pyx_v_mslice;
  __Pyx_memviewslice __pyx_v_tmp;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("is_c_contig", 0);

  /* "View.MemoryView":580
 *         cdef __Pyx_memviewslice *mslice
 *         cdef __Pyx_memviewslice tmp
 *         mslice = get_slice_from_memview(self, &tmp)             # <<<<<<<<<<<<<<
 *         return slice_is_contig(mslice, 'C', self.view.ndim)
 * 
 */
  __pyx_v_mslice = __pyx_memoryview_get_slice_from_memoryview(__pyx_v_self, (&__pyx_v_tmp));

  /* "View.MemoryView":581
 *         cdef __Pyx_memviewslice tmp
 *         mslice = get_slice_from_memview(self, &tmp)
 *         return slice_is_contig(mslice, 'C', self.view.ndim)             # <<<<<<<<<<<<<<
 * 
 *     def is_f_contig(self):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyBool_FromLong(__pyx_memviewslice_is_contig(__pyx_v_mslice, 'C', __pyx_v_self->view.ndim)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 581; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":577
 * 
 * 
 *     def is_c_contig(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice *mslice
 *         cdef __Pyx_memviewslice tmp
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview.is_c_contig", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":583
 *         return slice_is_contig(mslice, 'C', self.view.ndim)
 * 
 *     def is_f_contig(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice *mslice
 *         cdef __Pyx_memviewslice tmp
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_is_f_contig(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_memoryview_is_f_contig(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("is_f_contig (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_18is_f_contig(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_18is_f_contig(struct __pyx_memoryview_obj *__pyx_v_self) {
  __Pyx_memviewslice *__pyx_v_mslice;
  __Pyx_memviewslice __pyx_v_tmp;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("is_f_contig", 0);

  /* "View.MemoryView":586
 *         cdef __Pyx_memviewslice *mslice
 *         cdef __Pyx_memviewslice tmp
 *         mslice = get_slice_from_memview(self, &tmp)             # <<<<<<<<<<<<<<
 *         return slice_is_contig(mslice, 'F', self.view.ndim)
 * 
 */
  __pyx_v_mslice = __pyx_memoryview_get_slice_from_memoryview(__pyx_v_self, (&__pyx_v_tmp));

  /* "View.MemoryView":587
 *         cdef __Pyx_memviewslice tmp
 *         mslice = get_slice_from_memview(self, &tmp)
 *         return slice_is_contig(mslice, 'F', self.view.ndim)             # <<<<<<<<<<<<<<
 * 
 *     def copy(self):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyBool_FromLong(__pyx_memviewslice_is_contig(__pyx_v_mslice, 'F', __pyx_v_self->view.ndim)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 587; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":583
 *         return slice_is_contig(mslice, 'C', self.view.ndim)
 * 
 *     def is_f_contig(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice *mslice
 *         cdef __Pyx_memviewslice tmp
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview.is_f_contig", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":589
 *         return slice_is_contig(mslice, 'F', self.view.ndim)
 * 
 *     def copy(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice mslice
 *         cdef int flags = self.flags & ~PyBUF_F_CONTIGUOUS
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_copy(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_memoryview_copy(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("copy (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_20copy(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_20copy(struct __pyx_memoryview_obj *__pyx_v_self) {
  __Pyx_memviewslice __pyx_v_mslice;
  int __pyx_v_flags;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_memviewslice __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("copy", 0);

  /* "View.MemoryView":591
 *     def copy(self):
 *         cdef __Pyx_memviewslice mslice
 *         cdef int flags = self.flags & ~PyBUF_F_CONTIGUOUS             # <<<<<<<<<<<<<<
 * 
 *         slice_copy(self, &mslice)
 */
  __pyx_v_flags = (__pyx_v_self->flags & (~PyBUF_F_CONTIGUOUS));

  /* "View.MemoryView":593
 *         cdef int flags = self.flags & ~PyBUF_F_CONTIGUOUS
 * 
 *         slice_copy(self, &mslice)             # <<<<<<<<<<<<<<
 *         mslice = slice_copy_contig(&mslice, "c", self.view.ndim,
 *                                    self.view.itemsize,
 */
  __pyx_memoryview_slice_copy(__pyx_v_self, (&__pyx_v_mslice));

  /* "View.MemoryView":594
 * 
 *         slice_copy(self, &mslice)
 *         mslice = slice_copy_contig(&mslice, "c", self.view.ndim,             # <<<<<<<<<<<<<<
 *                                    self.view.itemsize,
 *                                    flags|PyBUF_C_CONTIGUOUS,
 */
  __pyx_t_1 = __pyx_memoryview_copy_new_contig((&__pyx_v_mslice), __pyx_k_c, __pyx_v_self->view.ndim, __pyx_v_self->view.itemsize, (__pyx_v_flags | PyBUF_C_CONTIGUOUS), __pyx_v_self->dtype_is_object); if (unlikely(PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 594; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_v_mslice = __pyx_t_1;

  /* "View.MemoryView":599
 *                                    self.dtype_is_object)
 * 
 *         return memoryview_copy_from_slice(self, &mslice)             # <<<<<<<<<<<<<<
 * 
 *     def copy_fortran(self):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_2 = __pyx_memoryview_copy_object_from_slice(__pyx_v_self, (&__pyx_v_mslice)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 599; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":589
 *         return slice_is_contig(mslice, 'F', self.view.ndim)
 * 
 *     def copy(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice mslice
 *         cdef int flags = self.flags & ~PyBUF_F_CONTIGUOUS
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.memoryview.copy", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":601
 *         return memoryview_copy_from_slice(self, &mslice)
 * 
 *     def copy_fortran(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice src, dst
 *         cdef int flags = self.flags & ~PyBUF_C_CONTIGUOUS
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_copy_fortran(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_memoryview_copy_fortran(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("copy_fortran (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_22copy_fortran(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_22copy_fortran(struct __pyx_memoryview_obj *__pyx_v_self) {
  __Pyx_memviewslice __pyx_v_src;
  __Pyx_memviewslice __pyx_v_dst;
  int __pyx_v_flags;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_memviewslice __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("copy_fortran", 0);

  /* "View.MemoryView":603
 *     def copy_fortran(self):
 *         cdef __Pyx_memviewslice src, dst
 *         cdef int flags = self.flags & ~PyBUF_C_CONTIGUOUS             # <<<<<<<<<<<<<<
 * 
 *         slice_copy(self, &src)
 */
  __pyx_v_flags = (__pyx_v_self->flags & (~PyBUF_C_CONTIGUOUS));

  /* "View.MemoryView":605
 *         cdef int flags = self.flags & ~PyBUF_C_CONTIGUOUS
 * 
 *         slice_copy(self, &src)             # <<<<<<<<<<<<<<
 *         dst = slice_copy_contig(&src, "fortran", self.view.ndim,
 *                                 self.view.itemsize,
 */
  __pyx_memoryview_slice_copy(__pyx_v_self, (&__pyx_v_src));

  /* "View.MemoryView":606
 * 
 *         slice_copy(self, &src)
 *         dst = slice_copy_contig(&src, "fortran", self.view.ndim,             # <<<<<<<<<<<<<<
 *                                 self.view.itemsize,
 *                                 flags|PyBUF_F_CONTIGUOUS,
 */
  __pyx_t_1 = __pyx_memoryview_copy_new_contig((&__pyx_v_src), __pyx_k_fortran, __pyx_v_self->view.ndim, __pyx_v_self->view.itemsize, (__pyx_v_flags | PyBUF_F_CONTIGUOUS), __pyx_v_self->dtype_is_object); if (unlikely(PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 606; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_v_dst = __pyx_t_1;

  /* "View.MemoryView":611
 *                                 self.dtype_is_object)
 * 
 *         return memoryview_copy_from_slice(self, &dst)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_2 = __pyx_memoryview_copy_object_from_slice(__pyx_v_self, (&__pyx_v_dst)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 611; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":601
 *         return memoryview_copy_from_slice(self, &mslice)
 * 
 *     def copy_fortran(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice src, dst
 *         cdef int flags = self.flags & ~PyBUF_C_CONTIGUOUS
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.memoryview.copy_fortran", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":615
 * 
 * @cname('__pyx_memoryview_new')
 * cdef memoryview_cwrapper(object o, int flags, bint dtype_is_object, __Pyx_TypeInfo *typeinfo):             # <<<<<<<<<<<<<<
 *     cdef memoryview result = memoryview(o, flags, dtype_is_object)
 *     result.typeinfo = typeinfo
 */

static PyObject *__pyx_memoryview_new(PyObject *__pyx_v_o, int __pyx_v_flags, int __pyx_v_dtype_is_object, __Pyx_TypeInfo *__pyx_v_typeinfo) {
  struct __pyx_memoryview_obj *__pyx_v_result = 0;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("memoryview_cwrapper", 0);

  /* "View.MemoryView":616
 * @cname('__pyx_memoryview_new')
 * cdef memoryview_cwrapper(object o, int flags, bint dtype_is_object, __Pyx_TypeInfo *typeinfo):
 *     cdef memoryview result = memoryview(o, flags, dtype_is_object)             # <<<<<<<<<<<<<<
 *     result.typeinfo = typeinfo
 *     return result
 */
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_flags); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 616; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_dtype_is_object); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 616; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = PyTuple_New(3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 616; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_INCREF(__pyx_v_o);
  __Pyx_GIVEREF(__pyx_v_o);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_o);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_t_2);
  __pyx_t_1 = 0;
  __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_memoryview_type), __pyx_t_3, NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 616; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_v_result = ((struct __pyx_memoryview_obj *)__pyx_t_2);
  __pyx_t_2 = 0;

  /* "View.MemoryView":617
 * cdef memoryview_cwrapper(object o, int flags, bint dtype_is_object, __Pyx_TypeInfo *typeinfo):
 *     cdef memoryview result = memoryview(o, flags, dtype_is_object)
 *     result.typeinfo = typeinfo             # <<<<<<<<<<<<<<
 *     return result
 * 
 */
  __pyx_v_result->typeinfo = __pyx_v_typeinfo;

  /* "View.MemoryView":618
 *     cdef memoryview result = memoryview(o, flags, dtype_is_object)
 *     result.typeinfo = typeinfo
 *     return result             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_check')
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(((PyObject *)__pyx_v_result));
  __pyx_r = ((PyObject *)__pyx_v_result);
  goto __pyx_L0;

  /* "View.MemoryView":615
 * 
 * @cname('__pyx_memoryview_new')
 * cdef memoryview_cwrapper(object o, int flags, bint dtype_is_object, __Pyx_TypeInfo *typeinfo):             # <<<<<<<<<<<<<<
 *     cdef memoryview result = memoryview(o, flags, dtype_is_object)
 *     result.typeinfo = typeinfo
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview_cwrapper", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_result);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":621
 * 
 * @cname('__pyx_memoryview_check')
 * cdef inline bint memoryview_check(object o):             # <<<<<<<<<<<<<<
 *     return isinstance(o, memoryview)
 * 
 */

static CYTHON_INLINE int __pyx_memoryview_check(PyObject *__pyx_v_o) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  __Pyx_RefNannySetupContext("memoryview_check", 0);

  /* "View.MemoryView":622
 * @cname('__pyx_memoryview_check')
 * cdef inline bint memoryview_check(object o):
 *     return isinstance(o, memoryview)             # <<<<<<<<<<<<<<
 * 
 * cdef tuple _unellipsify(object index, int ndim):
 */
  __pyx_t_1 = __Pyx_TypeCheck(__pyx_v_o, __pyx_memoryview_type); 
  __pyx_r = __pyx_t_1;
  goto __pyx_L0;

  /* "View.MemoryView":621
 * 
 * @cname('__pyx_memoryview_check')
 * cdef inline bint memoryview_check(object o):             # <<<<<<<<<<<<<<
 *     return isinstance(o, memoryview)
 * 
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":624
 *     return isinstance(o, memoryview)
 * 
 * cdef tuple _unellipsify(object index, int ndim):             # <<<<<<<<<<<<<<
 *     """
 *     Replace all ellipses with full slices and fill incomplete indices with
 */

static PyObject *_unellipsify(PyObject *__pyx_v_index, int __pyx_v_ndim) {
  PyObject *__pyx_v_tup = NULL;
  PyObject *__pyx_v_result = NULL;
  int __pyx_v_have_slices;
  int __pyx_v_seen_ellipsis;
  CYTHON_UNUSED PyObject *__pyx_v_idx = NULL;
  PyObject *__pyx_v_item = NULL;
  Py_ssize_t __pyx_v_nslices;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  Py_ssize_t __pyx_t_5;
  PyObject *(*__pyx_t_6)(PyObject *);
  PyObject *__pyx_t_7 = NULL;
  Py_ssize_t __pyx_t_8;
  int __pyx_t_9;
  int __pyx_t_10;
  PyObject *__pyx_t_11 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("_unellipsify", 0);

  /* "View.MemoryView":629
 *     full slices.
 *     """
 *     if not isinstance(index, tuple):             # <<<<<<<<<<<<<<
 *         tup = (index,)
 *     else:
 */
  __pyx_t_1 = PyTuple_Check(__pyx_v_index); 
  __pyx_t_2 = ((!(__pyx_t_1 != 0)) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":630
 *     """
 *     if not isinstance(index, tuple):
 *         tup = (index,)             # <<<<<<<<<<<<<<
 *     else:
 *         tup = index
 */
    __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 630; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_INCREF(__pyx_v_index);
    __Pyx_GIVEREF(__pyx_v_index);
    PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_index);
    __pyx_v_tup = __pyx_t_3;
    __pyx_t_3 = 0;

    /* "View.MemoryView":629
 *     full slices.
 *     """
 *     if not isinstance(index, tuple):             # <<<<<<<<<<<<<<
 *         tup = (index,)
 *     else:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":632
 *         tup = (index,)
 *     else:
 *         tup = index             # <<<<<<<<<<<<<<
 * 
 *     result = []
 */
  /*else*/ {
    __Pyx_INCREF(__pyx_v_index);
    __pyx_v_tup = __pyx_v_index;
  }
  __pyx_L3:;

  /* "View.MemoryView":634
 *         tup = index
 * 
 *     result = []             # <<<<<<<<<<<<<<
 *     have_slices = False
 *     seen_ellipsis = False
 */
  __pyx_t_3 = PyList_New(0); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 634; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_v_result = ((PyObject*)__pyx_t_3);
  __pyx_t_3 = 0;

  /* "View.MemoryView":635
 * 
 *     result = []
 *     have_slices = False             # <<<<<<<<<<<<<<
 *     seen_ellipsis = False
 *     for idx, item in enumerate(tup):
 */
  __pyx_v_have_slices = 0;

  /* "View.MemoryView":636
 *     result = []
 *     have_slices = False
 *     seen_ellipsis = False             # <<<<<<<<<<<<<<
 *     for idx, item in enumerate(tup):
 *         if item is Ellipsis:
 */
  __pyx_v_seen_ellipsis = 0;

  /* "View.MemoryView":637
 *     have_slices = False
 *     seen_ellipsis = False
 *     for idx, item in enumerate(tup):             # <<<<<<<<<<<<<<
 *         if item is Ellipsis:
 *             if not seen_ellipsis:
 */
  __Pyx_INCREF(__pyx_int_0);
  __pyx_t_3 = __pyx_int_0;
  if (likely(PyList_CheckExact(__pyx_v_tup)) || PyTuple_CheckExact(__pyx_v_tup)) {
    __pyx_t_4 = __pyx_v_tup; __Pyx_INCREF(__pyx_t_4); __pyx_t_5 = 0;
    __pyx_t_6 = NULL;
  } else {
    __pyx_t_5 = -1; __pyx_t_4 = PyObject_GetIter(__pyx_v_tup); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 637; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_6 = Py_TYPE(__pyx_t_4)->tp_iternext; if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 637; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  for (;;) {
    if (likely(!__pyx_t_6)) {
      if (likely(PyList_CheckExact(__pyx_t_4))) {
        if (__pyx_t_5 >= PyList_GET_SIZE(__pyx_t_4)) break;
        #if CYTHON_COMPILING_IN_CPYTHON
        __pyx_t_7 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_5); __Pyx_INCREF(__pyx_t_7); __pyx_t_5++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 637; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        #else
        __pyx_t_7 = PySequence_ITEM(__pyx_t_4, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 637; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __Pyx_GOTREF(__pyx_t_7);
        #endif
      } else {
        if (__pyx_t_5 >= PyTuple_GET_SIZE(__pyx_t_4)) break;
        #if CYTHON_COMPILING_IN_CPYTHON
        __pyx_t_7 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_5); __Pyx_INCREF(__pyx_t_7); __pyx_t_5++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 637; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        #else
        __pyx_t_7 = PySequence_ITEM(__pyx_t_4, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 637; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __Pyx_GOTREF(__pyx_t_7);
        #endif
      }
    } else {
      __pyx_t_7 = __pyx_t_6(__pyx_t_4);
      if (unlikely(!__pyx_t_7)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(exc_type == PyExc_StopIteration || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else {__pyx_filename = __pyx_f[1]; __pyx_lineno = 637; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_7);
    }
    __Pyx_XDECREF_SET(__pyx_v_item, __pyx_t_7);
    __pyx_t_7 = 0;
    __Pyx_INCREF(__pyx_t_3);
    __Pyx_XDECREF_SET(__pyx_v_idx, __pyx_t_3);
    __pyx_t_7 = __Pyx_PyInt_AddObjC(__pyx_t_3, __pyx_int_1, 1, 0); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 637; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3);
    __pyx_t_3 = __pyx_t_7;
    __pyx_t_7 = 0;

    /* "View.MemoryView":638
 *     seen_ellipsis = False
 *     for idx, item in enumerate(tup):
 *         if item is Ellipsis:             # <<<<<<<<<<<<<<
 *             if not seen_ellipsis:
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))
 */
    __pyx_t_2 = (__pyx_v_item == __pyx_builtin_Ellipsis);
    __pyx_t_1 = (__pyx_t_2 != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":639
 *     for idx, item in enumerate(tup):
 *         if item is Ellipsis:
 *             if not seen_ellipsis:             # <<<<<<<<<<<<<<
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))
 *                 seen_ellipsis = True
 */
      __pyx_t_1 = ((!(__pyx_v_seen_ellipsis != 0)) != 0);
      if (__pyx_t_1) {

        /* "View.MemoryView":640
 *         if item is Ellipsis:
 *             if not seen_ellipsis:
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))             # <<<<<<<<<<<<<<
 *                 seen_ellipsis = True
 *             else:
 */
        __pyx_t_8 = PyObject_Length(__pyx_v_tup); if (unlikely(__pyx_t_8 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 640; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __pyx_t_7 = PyList_New(1 * ((((__pyx_v_ndim - __pyx_t_8) + 1)<0) ? 0:((__pyx_v_ndim - __pyx_t_8) + 1))); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 640; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __Pyx_GOTREF(__pyx_t_7);
        { Py_ssize_t __pyx_temp;
          for (__pyx_temp=0; __pyx_temp < ((__pyx_v_ndim - __pyx_t_8) + 1); __pyx_temp++) {
            __Pyx_INCREF(__pyx_slice__21);
            __Pyx_GIVEREF(__pyx_slice__21);
            PyList_SET_ITEM(__pyx_t_7, __pyx_temp, __pyx_slice__21);
          }
        }
        __pyx_t_9 = __Pyx_PyList_Extend(__pyx_v_result, __pyx_t_7); if (unlikely(__pyx_t_9 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 640; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

        /* "View.MemoryView":641
 *             if not seen_ellipsis:
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))
 *                 seen_ellipsis = True             # <<<<<<<<<<<<<<
 *             else:
 *                 result.append(slice(None))
 */
        __pyx_v_seen_ellipsis = 1;

        /* "View.MemoryView":639
 *     for idx, item in enumerate(tup):
 *         if item is Ellipsis:
 *             if not seen_ellipsis:             # <<<<<<<<<<<<<<
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))
 *                 seen_ellipsis = True
 */
        goto __pyx_L7;
      }

      /* "View.MemoryView":643
 *                 seen_ellipsis = True
 *             else:
 *                 result.append(slice(None))             # <<<<<<<<<<<<<<
 *             have_slices = True
 *         else:
 */
      /*else*/ {
        __pyx_t_9 = __Pyx_PyList_Append(__pyx_v_result, __pyx_slice__22); if (unlikely(__pyx_t_9 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 643; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      }
      __pyx_L7:;

      /* "View.MemoryView":644
 *             else:
 *                 result.append(slice(None))
 *             have_slices = True             # <<<<<<<<<<<<<<
 *         else:
 *             if not isinstance(item, slice) and not PyIndex_Check(item):
 */
      __pyx_v_have_slices = 1;

      /* "View.MemoryView":638
 *     seen_ellipsis = False
 *     for idx, item in enumerate(tup):
 *         if item is Ellipsis:             # <<<<<<<<<<<<<<
 *             if not seen_ellipsis:
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))
 */
      goto __pyx_L6;
    }

    /* "View.MemoryView":646
 *             have_slices = True
 *         else:
 *             if not isinstance(item, slice) and not PyIndex_Check(item):             # <<<<<<<<<<<<<<
 *                 raise TypeError("Cannot index with type '%s'" % type(item))
 * 
 */
    /*else*/ {
      __pyx_t_2 = PySlice_Check(__pyx_v_item); 
      __pyx_t_10 = ((!(__pyx_t_2 != 0)) != 0);
      if (__pyx_t_10) {
      } else {
        __pyx_t_1 = __pyx_t_10;
        goto __pyx_L9_bool_binop_done;
      }
      __pyx_t_10 = ((!(PyIndex_Check(__pyx_v_item) != 0)) != 0);
      __pyx_t_1 = __pyx_t_10;
      __pyx_L9_bool_binop_done:;
      if (__pyx_t_1) {

        /* "View.MemoryView":647
 *         else:
 *             if not isinstance(item, slice) and not PyIndex_Check(item):
 *                 raise TypeError("Cannot index with type '%s'" % type(item))             # <<<<<<<<<<<<<<
 * 
 *             have_slices = have_slices or isinstance(item, slice)
 */
        __pyx_t_7 = __Pyx_PyString_Format(__pyx_kp_s_Cannot_index_with_type_s, ((PyObject *)Py_TYPE(__pyx_v_item))); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 647; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __Pyx_GOTREF(__pyx_t_7);
        __pyx_t_11 = PyTuple_New(1); if (unlikely(!__pyx_t_11)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 647; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __Pyx_GOTREF(__pyx_t_11);
        __Pyx_GIVEREF(__pyx_t_7);
        PyTuple_SET_ITEM(__pyx_t_11, 0, __pyx_t_7);
        __pyx_t_7 = 0;
        __pyx_t_7 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_t_11, NULL); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 647; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
        __Pyx_Raise(__pyx_t_7, 0, 0, 0);
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        {__pyx_filename = __pyx_f[1]; __pyx_lineno = 647; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

        /* "View.MemoryView":646
 *             have_slices = True
 *         else:
 *             if not isinstance(item, slice) and not PyIndex_Check(item):             # <<<<<<<<<<<<<<
 *                 raise TypeError("Cannot index with type '%s'" % type(item))
 * 
 */
      }

      /* "View.MemoryView":649
 *                 raise TypeError("Cannot index with type '%s'" % type(item))
 * 
 *             have_slices = have_slices or isinstance(item, slice)             # <<<<<<<<<<<<<<
 *             result.append(item)
 * 
 */
      __pyx_t_10 = (__pyx_v_have_slices != 0);
      if (!__pyx_t_10) {
      } else {
        __pyx_t_1 = __pyx_t_10;
        goto __pyx_L11_bool_binop_done;
      }
      __pyx_t_10 = PySlice_Check(__pyx_v_item); 
      __pyx_t_2 = (__pyx_t_10 != 0);
      __pyx_t_1 = __pyx_t_2;
      __pyx_L11_bool_binop_done:;
      __pyx_v_have_slices = __pyx_t_1;

      /* "View.MemoryView":650
 * 
 *             have_slices = have_slices or isinstance(item, slice)
 *             result.append(item)             # <<<<<<<<<<<<<<
 * 
 *     nslices = ndim - len(result)
 */
      __pyx_t_9 = __Pyx_PyList_Append(__pyx_v_result, __pyx_v_item); if (unlikely(__pyx_t_9 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 650; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
    __pyx_L6:;

    /* "View.MemoryView":637
 *     have_slices = False
 *     seen_ellipsis = False
 *     for idx, item in enumerate(tup):             # <<<<<<<<<<<<<<
 *         if item is Ellipsis:
 *             if not seen_ellipsis:
 */
  }
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

  /* "View.MemoryView":652
 *             result.append(item)
 * 
 *     nslices = ndim - len(result)             # <<<<<<<<<<<<<<
 *     if nslices:
 *         result.extend([slice(None)] * nslices)
 */
  __pyx_t_5 = PyList_GET_SIZE(__pyx_v_result); if (unlikely(__pyx_t_5 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 652; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_v_nslices = (__pyx_v_ndim - __pyx_t_5);

  /* "View.MemoryView":653
 * 
 *     nslices = ndim - len(result)
 *     if nslices:             # <<<<<<<<<<<<<<
 *         result.extend([slice(None)] * nslices)
 * 
 */
  __pyx_t_1 = (__pyx_v_nslices != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":654
 *     nslices = ndim - len(result)
 *     if nslices:
 *         result.extend([slice(None)] * nslices)             # <<<<<<<<<<<<<<
 * 
 *     return have_slices or nslices, tuple(result)
 */
    __pyx_t_3 = PyList_New(1 * ((__pyx_v_nslices<0) ? 0:__pyx_v_nslices)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 654; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    { Py_ssize_t __pyx_temp;
      for (__pyx_temp=0; __pyx_temp < __pyx_v_nslices; __pyx_temp++) {
        __Pyx_INCREF(__pyx_slice__23);
        __Pyx_GIVEREF(__pyx_slice__23);
        PyList_SET_ITEM(__pyx_t_3, __pyx_temp, __pyx_slice__23);
      }
    }
    __pyx_t_9 = __Pyx_PyList_Extend(__pyx_v_result, __pyx_t_3); if (unlikely(__pyx_t_9 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 654; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

    /* "View.MemoryView":653
 * 
 *     nslices = ndim - len(result)
 *     if nslices:             # <<<<<<<<<<<<<<
 *         result.extend([slice(None)] * nslices)
 * 
 */
  }

  /* "View.MemoryView":656
 *         result.extend([slice(None)] * nslices)
 * 
 *     return have_slices or nslices, tuple(result)             # <<<<<<<<<<<<<<
 * 
 * cdef assert_direct_dimensions(Py_ssize_t *suboffsets, int ndim):
 */
  __Pyx_XDECREF(__pyx_r);
  if (!__pyx_v_have_slices) {
  } else {
    __pyx_t_4 = __Pyx_PyBool_FromLong(__pyx_v_have_slices); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 656; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_3 = __pyx_t_4;
    __pyx_t_4 = 0;
    goto __pyx_L14_bool_binop_done;
  }
  __pyx_t_4 = PyInt_FromSsize_t(__pyx_v_nslices); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 656; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_3 = __pyx_t_4;
  __pyx_t_4 = 0;
  __pyx_L14_bool_binop_done:;
  __pyx_t_4 = PyList_AsTuple(__pyx_v_result); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 656; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_7 = PyTuple_New(2); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 656; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_GIVEREF(__pyx_t_3);
  PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_4);
  PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_4);
  __pyx_t_3 = 0;
  __pyx_t_4 = 0;
  __pyx_r = ((PyObject*)__pyx_t_7);
  __pyx_t_7 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":624
 *     return isinstance(o, memoryview)
 * 
 * cdef tuple _unellipsify(object index, int ndim):             # <<<<<<<<<<<<<<
 *     """
 *     Replace all ellipses with full slices and fill incomplete indices with
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_11);
  __Pyx_AddTraceback("View.MemoryView._unellipsify", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_tup);
  __Pyx_XDECREF(__pyx_v_result);
  __Pyx_XDECREF(__pyx_v_idx);
  __Pyx_XDECREF(__pyx_v_item);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":658
 *     return have_slices or nslices, tuple(result)
 * 
 * cdef assert_direct_dimensions(Py_ssize_t *suboffsets, int ndim):             # <<<<<<<<<<<<<<
 *     for suboffset in suboffsets[:ndim]:
 *         if suboffset >= 0:
 */

static PyObject *assert_direct_dimensions(Py_ssize_t *__pyx_v_suboffsets, int __pyx_v_ndim) {
  Py_ssize_t __pyx_v_suboffset;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  Py_ssize_t *__pyx_t_1;
  Py_ssize_t *__pyx_t_2;
  Py_ssize_t *__pyx_t_3;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("assert_direct_dimensions", 0);

  /* "View.MemoryView":659
 * 
 * cdef assert_direct_dimensions(Py_ssize_t *suboffsets, int ndim):
 *     for suboffset in suboffsets[:ndim]:             # <<<<<<<<<<<<<<
 *         if suboffset >= 0:
 *             raise ValueError("Indirect dimensions not supported")
 */
  __pyx_t_2 = (__pyx_v_suboffsets + __pyx_v_ndim);
  for (__pyx_t_3 = __pyx_v_suboffsets; __pyx_t_3 < __pyx_t_2; __pyx_t_3++) {
    __pyx_t_1 = __pyx_t_3;
    __pyx_v_suboffset = (__pyx_t_1[0]);

    /* "View.MemoryView":660
 * cdef assert_direct_dimensions(Py_ssize_t *suboffsets, int ndim):
 *     for suboffset in suboffsets[:ndim]:
 *         if suboffset >= 0:             # <<<<<<<<<<<<<<
 *             raise ValueError("Indirect dimensions not supported")
 * 
 */
    __pyx_t_4 = ((__pyx_v_suboffset >= 0) != 0);
    if (__pyx_t_4) {

      /* "View.MemoryView":661
 *     for suboffset in suboffsets[:ndim]:
 *         if suboffset >= 0:
 *             raise ValueError("Indirect dimensions not supported")             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__24, NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 661; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_Raise(__pyx_t_5, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      {__pyx_filename = __pyx_f[1]; __pyx_lineno = 661; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "View.MemoryView":660
 * cdef assert_direct_dimensions(Py_ssize_t *suboffsets, int ndim):
 *     for suboffset in suboffsets[:ndim]:
 *         if suboffset >= 0:             # <<<<<<<<<<<<<<
 *             raise ValueError("Indirect dimensions not supported")
 * 
 */
    }
  }

  /* "View.MemoryView":658
 *     return have_slices or nslices, tuple(result)
 * 
 * cdef assert_direct_dimensions(Py_ssize_t *suboffsets, int ndim):             # <<<<<<<<<<<<<<
 *     for suboffset in suboffsets[:ndim]:
 *         if suboffset >= 0:
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.assert_direct_dimensions", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":668
 * 
 * @cname('__pyx_memview_slice')
 * cdef memoryview memview_slice(memoryview memview, object indices):             # <<<<<<<<<<<<<<
 *     cdef int new_ndim = 0, suboffset_dim = -1, dim
 *     cdef bint negative_step
 */

static struct __pyx_memoryview_obj *__pyx_memview_slice(struct __pyx_memoryview_obj *__pyx_v_memview, PyObject *__pyx_v_indices) {
  int __pyx_v_new_ndim;
  int __pyx_v_suboffset_dim;
  int __pyx_v_dim;
  __Pyx_memviewslice __pyx_v_src;
  __Pyx_memviewslice __pyx_v_dst;
  __Pyx_memviewslice *__pyx_v_p_src;
  struct __pyx_memoryviewslice_obj *__pyx_v_memviewsliceobj = 0;
  __Pyx_memviewslice *__pyx_v_p_dst;
  int *__pyx_v_p_suboffset_dim;
  Py_ssize_t __pyx_v_start;
  Py_ssize_t __pyx_v_stop;
  Py_ssize_t __pyx_v_step;
  int __pyx_v_have_start;
  int __pyx_v_have_stop;
  int __pyx_v_have_step;
  PyObject *__pyx_v_index = NULL;
  struct __pyx_memoryview_obj *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  struct __pyx_memoryview_obj *__pyx_t_4;
  char *__pyx_t_5;
  int __pyx_t_6;
  Py_ssize_t __pyx_t_7;
  PyObject *(*__pyx_t_8)(PyObject *);
  PyObject *__pyx_t_9 = NULL;
  Py_ssize_t __pyx_t_10;
  int __pyx_t_11;
  Py_ssize_t __pyx_t_12;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("memview_slice", 0);

  /* "View.MemoryView":669
 * @cname('__pyx_memview_slice')
 * cdef memoryview memview_slice(memoryview memview, object indices):
 *     cdef int new_ndim = 0, suboffset_dim = -1, dim             # <<<<<<<<<<<<<<
 *     cdef bint negative_step
 *     cdef __Pyx_memviewslice src, dst
 */
  __pyx_v_new_ndim = 0;
  __pyx_v_suboffset_dim = -1;

  /* "View.MemoryView":676
 * 
 * 
 *     memset(&dst, 0, sizeof(dst))             # <<<<<<<<<<<<<<
 * 
 *     cdef _memoryviewslice memviewsliceobj
 */
  memset((&__pyx_v_dst), 0, (sizeof(__pyx_v_dst)));

  /* "View.MemoryView":680
 *     cdef _memoryviewslice memviewsliceobj
 * 
 *     assert memview.view.ndim > 0             # <<<<<<<<<<<<<<
 * 
 *     if isinstance(memview, _memoryviewslice):
 */
  #ifndef CYTHON_WITHOUT_ASSERTIONS
  if (unlikely(!Py_OptimizeFlag)) {
    if (unlikely(!((__pyx_v_memview->view.ndim > 0) != 0))) {
      PyErr_SetNone(PyExc_AssertionError);
      {__pyx_filename = __pyx_f[1]; __pyx_lineno = 680; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
  }
  #endif

  /* "View.MemoryView":682
 *     assert memview.view.ndim > 0
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         memviewsliceobj = memview
 *         p_src = &memviewsliceobj.from_slice
 */
  __pyx_t_1 = __Pyx_TypeCheck(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type); 
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":683
 * 
 *     if isinstance(memview, _memoryviewslice):
 *         memviewsliceobj = memview             # <<<<<<<<<<<<<<
 *         p_src = &memviewsliceobj.from_slice
 *     else:
 */
    if (!(likely(((((PyObject *)__pyx_v_memview)) == Py_None) || likely(__Pyx_TypeTest(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type))))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 683; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_t_3 = ((PyObject *)__pyx_v_memview);
    __Pyx_INCREF(__pyx_t_3);
    __pyx_v_memviewsliceobj = ((struct __pyx_memoryviewslice_obj *)__pyx_t_3);
    __pyx_t_3 = 0;

    /* "View.MemoryView":684
 *     if isinstance(memview, _memoryviewslice):
 *         memviewsliceobj = memview
 *         p_src = &memviewsliceobj.from_slice             # <<<<<<<<<<<<<<
 *     else:
 *         slice_copy(memview, &src)
 */
    __pyx_v_p_src = (&__pyx_v_memviewsliceobj->from_slice);

    /* "View.MemoryView":682
 *     assert memview.view.ndim > 0
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         memviewsliceobj = memview
 *         p_src = &memviewsliceobj.from_slice
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":686
 *         p_src = &memviewsliceobj.from_slice
 *     else:
 *         slice_copy(memview, &src)             # <<<<<<<<<<<<<<
 *         p_src = &src
 * 
 */
  /*else*/ {
    __pyx_memoryview_slice_copy(__pyx_v_memview, (&__pyx_v_src));

    /* "View.MemoryView":687
 *     else:
 *         slice_copy(memview, &src)
 *         p_src = &src             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __pyx_v_p_src = (&__pyx_v_src);
  }
  __pyx_L3:;

  /* "View.MemoryView":693
 * 
 * 
 *     dst.memview = p_src.memview             # <<<<<<<<<<<<<<
 *     dst.data = p_src.data
 * 
 */
  __pyx_t_4 = __pyx_v_p_src->memview;
  __pyx_v_dst.memview = __pyx_t_4;

  /* "View.MemoryView":694
 * 
 *     dst.memview = p_src.memview
 *     dst.data = p_src.data             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_5 = __pyx_v_p_src->data;
  __pyx_v_dst.data = __pyx_t_5;

  /* "View.MemoryView":699
 * 
 * 
 *     cdef __Pyx_memviewslice *p_dst = &dst             # <<<<<<<<<<<<<<
 *     cdef int *p_suboffset_dim = &suboffset_dim
 *     cdef Py_ssize_t start, stop, step
 */
  __pyx_v_p_dst = (&__pyx_v_dst);

  /* "View.MemoryView":700
 * 
 *     cdef __Pyx_memviewslice *p_dst = &dst
 *     cdef int *p_suboffset_dim = &suboffset_dim             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t start, stop, step
 *     cdef bint have_start, have_stop, have_step
 */
  __pyx_v_p_suboffset_dim = (&__pyx_v_suboffset_dim);

  /* "View.MemoryView":704
 *     cdef bint have_start, have_stop, have_step
 * 
 *     for dim, index in enumerate(indices):             # <<<<<<<<<<<<<<
 *         if PyIndex_Check(index):
 *             slice_memviewslice(
 */
  __pyx_t_6 = 0;
  if (likely(PyList_CheckExact(__pyx_v_indices)) || PyTuple_CheckExact(__pyx_v_indices)) {
    __pyx_t_3 = __pyx_v_indices; __Pyx_INCREF(__pyx_t_3); __pyx_t_7 = 0;
    __pyx_t_8 = NULL;
  } else {
    __pyx_t_7 = -1; __pyx_t_3 = PyObject_GetIter(__pyx_v_indices); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 704; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_8 = Py_TYPE(__pyx_t_3)->tp_iternext; if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 704; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  for (;;) {
    if (likely(!__pyx_t_8)) {
      if (likely(PyList_CheckExact(__pyx_t_3))) {
        if (__pyx_t_7 >= PyList_GET_SIZE(__pyx_t_3)) break;
        #if CYTHON_COMPILING_IN_CPYTHON
        __pyx_t_9 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_7); __Pyx_INCREF(__pyx_t_9); __pyx_t_7++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 704; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        #else
        __pyx_t_9 = PySequence_ITEM(__pyx_t_3, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 704; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __Pyx_GOTREF(__pyx_t_9);
        #endif
      } else {
        if (__pyx_t_7 >= PyTuple_GET_SIZE(__pyx_t_3)) break;
        #if CYTHON_COMPILING_IN_CPYTHON
        __pyx_t_9 = PyTuple_GET_ITEM(__pyx_t_3, __pyx_t_7); __Pyx_INCREF(__pyx_t_9); __pyx_t_7++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 704; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        #else
        __pyx_t_9 = PySequence_ITEM(__pyx_t_3, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 704; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __Pyx_GOTREF(__pyx_t_9);
        #endif
      }
    } else {
      __pyx_t_9 = __pyx_t_8(__pyx_t_3);
      if (unlikely(!__pyx_t_9)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(exc_type == PyExc_StopIteration || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else {__pyx_filename = __pyx_f[1]; __pyx_lineno = 704; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_9);
    }
    __Pyx_XDECREF_SET(__pyx_v_index, __pyx_t_9);
    __pyx_t_9 = 0;
    __pyx_v_dim = __pyx_t_6;
    __pyx_t_6 = (__pyx_t_6 + 1);

    /* "View.MemoryView":705
 * 
 *     for dim, index in enumerate(indices):
 *         if PyIndex_Check(index):             # <<<<<<<<<<<<<<
 *             slice_memviewslice(
 *                 p_dst, p_src.shape[dim], p_src.strides[dim], p_src.suboffsets[dim],
 */
    __pyx_t_2 = (PyIndex_Check(__pyx_v_index) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":709
 *                 p_dst, p_src.shape[dim], p_src.strides[dim], p_src.suboffsets[dim],
 *                 dim, new_ndim, p_suboffset_dim,
 *                 index, 0, 0, # start, stop, step             # <<<<<<<<<<<<<<
 *                 0, 0, 0, # have_{start,stop,step}
 *                 False)
 */
      __pyx_t_10 = __Pyx_PyIndex_AsSsize_t(__pyx_v_index); if (unlikely((__pyx_t_10 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 709; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "View.MemoryView":706
 *     for dim, index in enumerate(indices):
 *         if PyIndex_Check(index):
 *             slice_memviewslice(             # <<<<<<<<<<<<<<
 *                 p_dst, p_src.shape[dim], p_src.strides[dim], p_src.suboffsets[dim],
 *                 dim, new_ndim, p_suboffset_dim,
 */
      __pyx_t_11 = __pyx_memoryview_slice_memviewslice(__pyx_v_p_dst, (__pyx_v_p_src->shape[__pyx_v_dim]), (__pyx_v_p_src->strides[__pyx_v_dim]), (__pyx_v_p_src->suboffsets[__pyx_v_dim]), __pyx_v_dim, __pyx_v_new_ndim, __pyx_v_p_suboffset_dim, __pyx_t_10, 0, 0, 0, 0, 0, 0); if (unlikely(__pyx_t_11 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 706; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "View.MemoryView":705
 * 
 *     for dim, index in enumerate(indices):
 *         if PyIndex_Check(index):             # <<<<<<<<<<<<<<
 *             slice_memviewslice(
 *                 p_dst, p_src.shape[dim], p_src.strides[dim], p_src.suboffsets[dim],
 */
      goto __pyx_L6;
    }

    /* "View.MemoryView":712
 *                 0, 0, 0, # have_{start,stop,step}
 *                 False)
 *         elif index is None:             # <<<<<<<<<<<<<<
 *             p_dst.shape[new_ndim] = 1
 *             p_dst.strides[new_ndim] = 0
 */
    __pyx_t_2 = (__pyx_v_index == Py_None);
    __pyx_t_1 = (__pyx_t_2 != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":713
 *                 False)
 *         elif index is None:
 *             p_dst.shape[new_ndim] = 1             # <<<<<<<<<<<<<<
 *             p_dst.strides[new_ndim] = 0
 *             p_dst.suboffsets[new_ndim] = -1
 */
      (__pyx_v_p_dst->shape[__pyx_v_new_ndim]) = 1;

      /* "View.MemoryView":714
 *         elif index is None:
 *             p_dst.shape[new_ndim] = 1
 *             p_dst.strides[new_ndim] = 0             # <<<<<<<<<<<<<<
 *             p_dst.suboffsets[new_ndim] = -1
 *             new_ndim += 1
 */
      (__pyx_v_p_dst->strides[__pyx_v_new_ndim]) = 0;

      /* "View.MemoryView":715
 *             p_dst.shape[new_ndim] = 1
 *             p_dst.strides[new_ndim] = 0
 *             p_dst.suboffsets[new_ndim] = -1             # <<<<<<<<<<<<<<
 *             new_ndim += 1
 *         else:
 */
      (__pyx_v_p_dst->suboffsets[__pyx_v_new_ndim]) = -1L;

      /* "View.MemoryView":716
 *             p_dst.strides[new_ndim] = 0
 *             p_dst.suboffsets[new_ndim] = -1
 *             new_ndim += 1             # <<<<<<<<<<<<<<
 *         else:
 *             start = index.start or 0
 */
      __pyx_v_new_ndim = (__pyx_v_new_ndim + 1);

      /* "View.MemoryView":712
 *                 0, 0, 0, # have_{start,stop,step}
 *                 False)
 *         elif index is None:             # <<<<<<<<<<<<<<
 *             p_dst.shape[new_ndim] = 1
 *             p_dst.strides[new_ndim] = 0
 */
      goto __pyx_L6;
    }

    /* "View.MemoryView":718
 *             new_ndim += 1
 *         else:
 *             start = index.start or 0             # <<<<<<<<<<<<<<
 *             stop = index.stop or 0
 *             step = index.step or 0
 */
    /*else*/ {
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_index, __pyx_n_s_start); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 718; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_9); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 718; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      if (!__pyx_t_1) {
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      } else {
        __pyx_t_12 = __Pyx_PyIndex_AsSsize_t(__pyx_t_9); if (unlikely((__pyx_t_12 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 718; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __pyx_t_10 = __pyx_t_12;
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
        goto __pyx_L7_bool_binop_done;
      }
      __pyx_t_10 = 0;
      __pyx_L7_bool_binop_done:;
      __pyx_v_start = __pyx_t_10;

      /* "View.MemoryView":719
 *         else:
 *             start = index.start or 0
 *             stop = index.stop or 0             # <<<<<<<<<<<<<<
 *             step = index.step or 0
 * 
 */
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_index, __pyx_n_s_stop); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 719; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_9); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 719; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      if (!__pyx_t_1) {
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      } else {
        __pyx_t_12 = __Pyx_PyIndex_AsSsize_t(__pyx_t_9); if (unlikely((__pyx_t_12 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 719; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __pyx_t_10 = __pyx_t_12;
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
        goto __pyx_L9_bool_binop_done;
      }
      __pyx_t_10 = 0;
      __pyx_L9_bool_binop_done:;
      __pyx_v_stop = __pyx_t_10;

      /* "View.MemoryView":720
 *             start = index.start or 0
 *             stop = index.stop or 0
 *             step = index.step or 0             # <<<<<<<<<<<<<<
 * 
 *             have_start = index.start is not None
 */
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_index, __pyx_n_s_step); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 720; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_9); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 720; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      if (!__pyx_t_1) {
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      } else {
        __pyx_t_12 = __Pyx_PyIndex_AsSsize_t(__pyx_t_9); if (unlikely((__pyx_t_12 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 720; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
        __pyx_t_10 = __pyx_t_12;
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
        goto __pyx_L11_bool_binop_done;
      }
      __pyx_t_10 = 0;
      __pyx_L11_bool_binop_done:;
      __pyx_v_step = __pyx_t_10;

      /* "View.MemoryView":722
 *             step = index.step or 0
 * 
 *             have_start = index.start is not None             # <<<<<<<<<<<<<<
 *             have_stop = index.stop is not None
 *             have_step = index.step is not None
 */
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_index, __pyx_n_s_start); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 722; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_1 = (__pyx_t_9 != Py_None);
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      __pyx_v_have_start = __pyx_t_1;

      /* "View.MemoryView":723
 * 
 *             have_start = index.start is not None
 *             have_stop = index.stop is not None             # <<<<<<<<<<<<<<
 *             have_step = index.step is not None
 * 
 */
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_index, __pyx_n_s_stop); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 723; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_1 = (__pyx_t_9 != Py_None);
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      __pyx_v_have_stop = __pyx_t_1;

      /* "View.MemoryView":724
 *             have_start = index.start is not None
 *             have_stop = index.stop is not None
 *             have_step = index.step is not None             # <<<<<<<<<<<<<<
 * 
 *             slice_memviewslice(
 */
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_index, __pyx_n_s_step); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 724; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_1 = (__pyx_t_9 != Py_None);
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      __pyx_v_have_step = __pyx_t_1;

      /* "View.MemoryView":726
 *             have_step = index.step is not None
 * 
 *             slice_memviewslice(             # <<<<<<<<<<<<<<
 *                 p_dst, p_src.shape[dim], p_src.strides[dim], p_src.suboffsets[dim],
 *                 dim, new_ndim, p_suboffset_dim,
 */
      __pyx_t_11 = __pyx_memoryview_slice_memviewslice(__pyx_v_p_dst, (__pyx_v_p_src->shape[__pyx_v_dim]), (__pyx_v_p_src->strides[__pyx_v_dim]), (__pyx_v_p_src->suboffsets[__pyx_v_dim]), __pyx_v_dim, __pyx_v_new_ndim, __pyx_v_p_suboffset_dim, __pyx_v_start, __pyx_v_stop, __pyx_v_step, __pyx_v_have_start, __pyx_v_have_stop, __pyx_v_have_step, 1); if (unlikely(__pyx_t_11 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 726; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "View.MemoryView":732
 *                 have_start, have_stop, have_step,
 *                 True)
 *             new_ndim += 1             # <<<<<<<<<<<<<<
 * 
 *     if isinstance(memview, _memoryviewslice):
 */
      __pyx_v_new_ndim = (__pyx_v_new_ndim + 1);
    }
    __pyx_L6:;

    /* "View.MemoryView":704
 *     cdef bint have_start, have_stop, have_step
 * 
 *     for dim, index in enumerate(indices):             # <<<<<<<<<<<<<<
 *         if PyIndex_Check(index):
 *             slice_memviewslice(
 */
  }
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

  /* "View.MemoryView":734
 *             new_ndim += 1
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         return memoryview_fromslice(dst, new_ndim,
 *                                     memviewsliceobj.to_object_func,
 */
  __pyx_t_1 = __Pyx_TypeCheck(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type); 
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":735
 * 
 *     if isinstance(memview, _memoryviewslice):
 *         return memoryview_fromslice(dst, new_ndim,             # <<<<<<<<<<<<<<
 *                                     memviewsliceobj.to_object_func,
 *                                     memviewsliceobj.to_dtype_func,
 */
    __Pyx_XDECREF(((PyObject *)__pyx_r));

    /* "View.MemoryView":736
 *     if isinstance(memview, _memoryviewslice):
 *         return memoryview_fromslice(dst, new_ndim,
 *                                     memviewsliceobj.to_object_func,             # <<<<<<<<<<<<<<
 *                                     memviewsliceobj.to_dtype_func,
 *                                     memview.dtype_is_object)
 */
    if (unlikely(!__pyx_v_memviewsliceobj)) { __Pyx_RaiseUnboundLocalError("memviewsliceobj"); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 736; __pyx_clineno = __LINE__; goto __pyx_L1_error;} }

    /* "View.MemoryView":737
 *         return memoryview_fromslice(dst, new_ndim,
 *                                     memviewsliceobj.to_object_func,
 *                                     memviewsliceobj.to_dtype_func,             # <<<<<<<<<<<<<<
 *                                     memview.dtype_is_object)
 *     else:
 */
    if (unlikely(!__pyx_v_memviewsliceobj)) { __Pyx_RaiseUnboundLocalError("memviewsliceobj"); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 737; __pyx_clineno = __LINE__; goto __pyx_L1_error;} }

    /* "View.MemoryView":735
 * 
 *     if isinstance(memview, _memoryviewslice):
 *         return memoryview_fromslice(dst, new_ndim,             # <<<<<<<<<<<<<<
 *                                     memviewsliceobj.to_object_func,
 *                                     memviewsliceobj.to_dtype_func,
 */
    __pyx_t_3 = __pyx_memoryview_fromslice(__pyx_v_dst, __pyx_v_new_ndim, __pyx_v_memviewsliceobj->to_object_func, __pyx_v_memviewsliceobj->to_dtype_func, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 735; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_memoryview_type))))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 735; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_r = ((struct __pyx_memoryview_obj *)__pyx_t_3);
    __pyx_t_3 = 0;
    goto __pyx_L0;

    /* "View.MemoryView":734
 *             new_ndim += 1
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         return memoryview_fromslice(dst, new_ndim,
 *                                     memviewsliceobj.to_object_func,
 */
  }

  /* "View.MemoryView":740
 *                                     memview.dtype_is_object)
 *     else:
 *         return memoryview_fromslice(dst, new_ndim, NULL, NULL,             # <<<<<<<<<<<<<<
 *                                     memview.dtype_is_object)
 * 
 */
  /*else*/ {
    __Pyx_XDECREF(((PyObject *)__pyx_r));

    /* "View.MemoryView":741
 *     else:
 *         return memoryview_fromslice(dst, new_ndim, NULL, NULL,
 *                                     memview.dtype_is_object)             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __pyx_t_3 = __pyx_memoryview_fromslice(__pyx_v_dst, __pyx_v_new_ndim, NULL, NULL, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 740; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);

    /* "View.MemoryView":740
 *                                     memview.dtype_is_object)
 *     else:
 *         return memoryview_fromslice(dst, new_ndim, NULL, NULL,             # <<<<<<<<<<<<<<
 *                                     memview.dtype_is_object)
 * 
 */
    if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_memoryview_type))))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 740; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_r = ((struct __pyx_memoryview_obj *)__pyx_t_3);
    __pyx_t_3 = 0;
    goto __pyx_L0;
  }

  /* "View.MemoryView":668
 * 
 * @cname('__pyx_memview_slice')
 * cdef memoryview memview_slice(memoryview memview, object indices):             # <<<<<<<<<<<<<<
 *     cdef int new_ndim = 0, suboffset_dim = -1, dim
 *     cdef bint negative_step
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_AddTraceback("View.MemoryView.memview_slice", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_memviewsliceobj);
  __Pyx_XDECREF(__pyx_v_index);
  __Pyx_XGIVEREF((PyObject *)__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":765
 * 
 * @cname('__pyx_memoryview_slice_memviewslice')
 * cdef int slice_memviewslice(             # <<<<<<<<<<<<<<
 *         __Pyx_memviewslice *dst,
 *         Py_ssize_t shape, Py_ssize_t stride, Py_ssize_t suboffset,
 */

static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, Py_ssize_t __pyx_v_shape, Py_ssize_t __pyx_v_stride, Py_ssize_t __pyx_v_suboffset, int __pyx_v_dim, int __pyx_v_new_ndim, int *__pyx_v_suboffset_dim, Py_ssize_t __pyx_v_start, Py_ssize_t __pyx_v_stop, Py_ssize_t __pyx_v_step, int __pyx_v_have_start, int __pyx_v_have_stop, int __pyx_v_have_step, int __pyx_v_is_slice) {
  Py_ssize_t __pyx_v_new_shape;
  int __pyx_v_negative_step;
  int __pyx_r;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;

  /* "View.MemoryView":785
 *     cdef bint negative_step
 * 
 *     if not is_slice:             # <<<<<<<<<<<<<<
 * 
 *         if start < 0:
 */
  __pyx_t_1 = ((!(__pyx_v_is_slice != 0)) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":787
 *     if not is_slice:
 * 
 *         if start < 0:             # <<<<<<<<<<<<<<
 *             start += shape
 *         if not 0 <= start < shape:
 */
    __pyx_t_1 = ((__pyx_v_start < 0) != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":788
 * 
 *         if start < 0:
 *             start += shape             # <<<<<<<<<<<<<<
 *         if not 0 <= start < shape:
 *             _err_dim(IndexError, "Index out of bounds (axis %d)", dim)
 */
      __pyx_v_start = (__pyx_v_start + __pyx_v_shape);

      /* "View.MemoryView":787
 *     if not is_slice:
 * 
 *         if start < 0:             # <<<<<<<<<<<<<<
 *             start += shape
 *         if not 0 <= start < shape:
 */
    }

    /* "View.MemoryView":789
 *         if start < 0:
 *             start += shape
 *         if not 0 <= start < shape:             # <<<<<<<<<<<<<<
 *             _err_dim(IndexError, "Index out of bounds (axis %d)", dim)
 *     else:
 */
    __pyx_t_1 = (0 <= __pyx_v_start);
    if (__pyx_t_1) {
      __pyx_t_1 = (__pyx_v_start < __pyx_v_shape);
    }
    __pyx_t_2 = ((!(__pyx_t_1 != 0)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":790
 *             start += shape
 *         if not 0 <= start < shape:
 *             _err_dim(IndexError, "Index out of bounds (axis %d)", dim)             # <<<<<<<<<<<<<<
 *     else:
 * 
 */
      __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_IndexError, __pyx_k_Index_out_of_bounds_axis_d, __pyx_v_dim); if (unlikely(__pyx_t_3 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 790; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "View.MemoryView":789
 *         if start < 0:
 *             start += shape
 *         if not 0 <= start < shape:             # <<<<<<<<<<<<<<
 *             _err_dim(IndexError, "Index out of bounds (axis %d)", dim)
 *     else:
 */
    }

    /* "View.MemoryView":785
 *     cdef bint negative_step
 * 
 *     if not is_slice:             # <<<<<<<<<<<<<<
 * 
 *         if start < 0:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":793
 *     else:
 * 
 *         negative_step = have_step != 0 and step < 0             # <<<<<<<<<<<<<<
 * 
 *         if have_step and step == 0:
 */
  /*else*/ {
    __pyx_t_1 = ((__pyx_v_have_step != 0) != 0);
    if (__pyx_t_1) {
    } else {
      __pyx_t_2 = __pyx_t_1;
      goto __pyx_L6_bool_binop_done;
    }
    __pyx_t_1 = ((__pyx_v_step < 0) != 0);
    __pyx_t_2 = __pyx_t_1;
    __pyx_L6_bool_binop_done:;
    __pyx_v_negative_step = __pyx_t_2;

    /* "View.MemoryView":795
 *         negative_step = have_step != 0 and step < 0
 * 
 *         if have_step and step == 0:             # <<<<<<<<<<<<<<
 *             _err_dim(ValueError, "Step may not be zero (axis %d)", dim)
 * 
 */
    __pyx_t_1 = (__pyx_v_have_step != 0);
    if (__pyx_t_1) {
    } else {
      __pyx_t_2 = __pyx_t_1;
      goto __pyx_L9_bool_binop_done;
    }
    __pyx_t_1 = ((__pyx_v_step == 0) != 0);
    __pyx_t_2 = __pyx_t_1;
    __pyx_L9_bool_binop_done:;
    if (__pyx_t_2) {

      /* "View.MemoryView":796
 * 
 *         if have_step and step == 0:
 *             _err_dim(ValueError, "Step may not be zero (axis %d)", dim)             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_ValueError, __pyx_k_Step_may_not_be_zero_axis_d, __pyx_v_dim); if (unlikely(__pyx_t_3 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 796; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "View.MemoryView":795
 *         negative_step = have_step != 0 and step < 0
 * 
 *         if have_step and step == 0:             # <<<<<<<<<<<<<<
 *             _err_dim(ValueError, "Step may not be zero (axis %d)", dim)
 * 
 */
    }

    /* "View.MemoryView":799
 * 
 * 
 *         if have_start:             # <<<<<<<<<<<<<<
 *             if start < 0:
 *                 start += shape
 */
    __pyx_t_2 = (__pyx_v_have_start != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":800
 * 
 *         if have_start:
 *             if start < 0:             # <<<<<<<<<<<<<<
 *                 start += shape
 *                 if start < 0:
 */
      __pyx_t_2 = ((__pyx_v_start < 0) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":801
 *         if have_start:
 *             if start < 0:
 *                 start += shape             # <<<<<<<<<<<<<<
 *                 if start < 0:
 *                     start = 0
 */
        __pyx_v_start = (__pyx_v_start + __pyx_v_shape);

        /* "View.MemoryView":802
 *             if start < 0:
 *                 start += shape
 *                 if start < 0:             # <<<<<<<<<<<<<<
 *                     start = 0
 *             elif start >= shape:
 */
        __pyx_t_2 = ((__pyx_v_start < 0) != 0);
        if (__pyx_t_2) {

          /* "View.MemoryView":803
 *                 start += shape
 *                 if start < 0:
 *                     start = 0             # <<<<<<<<<<<<<<
 *             elif start >= shape:
 *                 if negative_step:
 */
          __pyx_v_start = 0;

          /* "View.MemoryView":802
 *             if start < 0:
 *                 start += shape
 *                 if start < 0:             # <<<<<<<<<<<<<<
 *                     start = 0
 *             elif start >= shape:
 */
        }

        /* "View.MemoryView":800
 * 
 *         if have_start:
 *             if start < 0:             # <<<<<<<<<<<<<<
 *                 start += shape
 *                 if start < 0:
 */
        goto __pyx_L12;
      }

      /* "View.MemoryView":804
 *                 if start < 0:
 *                     start = 0
 *             elif start >= shape:             # <<<<<<<<<<<<<<
 *                 if negative_step:
 *                     start = shape - 1
 */
      __pyx_t_2 = ((__pyx_v_start >= __pyx_v_shape) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":805
 *                     start = 0
 *             elif start >= shape:
 *                 if negative_step:             # <<<<<<<<<<<<<<
 *                     start = shape - 1
 *                 else:
 */
        __pyx_t_2 = (__pyx_v_negative_step != 0);
        if (__pyx_t_2) {

          /* "View.MemoryView":806
 *             elif start >= shape:
 *                 if negative_step:
 *                     start = shape - 1             # <<<<<<<<<<<<<<
 *                 else:
 *                     start = shape
 */
          __pyx_v_start = (__pyx_v_shape - 1);

          /* "View.MemoryView":805
 *                     start = 0
 *             elif start >= shape:
 *                 if negative_step:             # <<<<<<<<<<<<<<
 *                     start = shape - 1
 *                 else:
 */
          goto __pyx_L14;
        }

        /* "View.MemoryView":808
 *                     start = shape - 1
 *                 else:
 *                     start = shape             # <<<<<<<<<<<<<<
 *         else:
 *             if negative_step:
 */
        /*else*/ {
          __pyx_v_start = __pyx_v_shape;
        }
        __pyx_L14:;

        /* "View.MemoryView":804
 *                 if start < 0:
 *                     start = 0
 *             elif start >= shape:             # <<<<<<<<<<<<<<
 *                 if negative_step:
 *                     start = shape - 1
 */
      }
      __pyx_L12:;

      /* "View.MemoryView":799
 * 
 * 
 *         if have_start:             # <<<<<<<<<<<<<<
 *             if start < 0:
 *                 start += shape
 */
      goto __pyx_L11;
    }

    /* "View.MemoryView":810
 *                     start = shape
 *         else:
 *             if negative_step:             # <<<<<<<<<<<<<<
 *                 start = shape - 1
 *             else:
 */
    /*else*/ {
      __pyx_t_2 = (__pyx_v_negative_step != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":811
 *         else:
 *             if negative_step:
 *                 start = shape - 1             # <<<<<<<<<<<<<<
 *             else:
 *                 start = 0
 */
        __pyx_v_start = (__pyx_v_shape - 1);

        /* "View.MemoryView":810
 *                     start = shape
 *         else:
 *             if negative_step:             # <<<<<<<<<<<<<<
 *                 start = shape - 1
 *             else:
 */
        goto __pyx_L15;
      }

      /* "View.MemoryView":813
 *                 start = shape - 1
 *             else:
 *                 start = 0             # <<<<<<<<<<<<<<
 * 
 *         if have_stop:
 */
      /*else*/ {
        __pyx_v_start = 0;
      }
      __pyx_L15:;
    }
    __pyx_L11:;

    /* "View.MemoryView":815
 *                 start = 0
 * 
 *         if have_stop:             # <<<<<<<<<<<<<<
 *             if stop < 0:
 *                 stop += shape
 */
    __pyx_t_2 = (__pyx_v_have_stop != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":816
 * 
 *         if have_stop:
 *             if stop < 0:             # <<<<<<<<<<<<<<
 *                 stop += shape
 *                 if stop < 0:
 */
      __pyx_t_2 = ((__pyx_v_stop < 0) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":817
 *         if have_stop:
 *             if stop < 0:
 *                 stop += shape             # <<<<<<<<<<<<<<
 *                 if stop < 0:
 *                     stop = 0
 */
        __pyx_v_stop = (__pyx_v_stop + __pyx_v_shape);

        /* "View.MemoryView":818
 *             if stop < 0:
 *                 stop += shape
 *                 if stop < 0:             # <<<<<<<<<<<<<<
 *                     stop = 0
 *             elif stop > shape:
 */
        __pyx_t_2 = ((__pyx_v_stop < 0) != 0);
        if (__pyx_t_2) {

          /* "View.MemoryView":819
 *                 stop += shape
 *                 if stop < 0:
 *                     stop = 0             # <<<<<<<<<<<<<<
 *             elif stop > shape:
 *                 stop = shape
 */
          __pyx_v_stop = 0;

          /* "View.MemoryView":818
 *             if stop < 0:
 *                 stop += shape
 *                 if stop < 0:             # <<<<<<<<<<<<<<
 *                     stop = 0
 *             elif stop > shape:
 */
        }

        /* "View.MemoryView":816
 * 
 *         if have_stop:
 *             if stop < 0:             # <<<<<<<<<<<<<<
 *                 stop += shape
 *                 if stop < 0:
 */
        goto __pyx_L17;
      }

      /* "View.MemoryView":820
 *                 if stop < 0:
 *                     stop = 0
 *             elif stop > shape:             # <<<<<<<<<<<<<<
 *                 stop = shape
 *         else:
 */
      __pyx_t_2 = ((__pyx_v_stop > __pyx_v_shape) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":821
 *                     stop = 0
 *             elif stop > shape:
 *                 stop = shape             # <<<<<<<<<<<<<<
 *         else:
 *             if negative_step:
 */
        __pyx_v_stop = __pyx_v_shape;

        /* "View.MemoryView":820
 *                 if stop < 0:
 *                     stop = 0
 *             elif stop > shape:             # <<<<<<<<<<<<<<
 *                 stop = shape
 *         else:
 */
      }
      __pyx_L17:;

      /* "View.MemoryView":815
 *                 start = 0
 * 
 *         if have_stop:             # <<<<<<<<<<<<<<
 *             if stop < 0:
 *                 stop += shape
 */
      goto __pyx_L16;
    }

    /* "View.MemoryView":823
 *                 stop = shape
 *         else:
 *             if negative_step:             # <<<<<<<<<<<<<<
 *                 stop = -1
 *             else:
 */
    /*else*/ {
      __pyx_t_2 = (__pyx_v_negative_step != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":824
 *         else:
 *             if negative_step:
 *                 stop = -1             # <<<<<<<<<<<<<<
 *             else:
 *                 stop = shape
 */
        __pyx_v_stop = -1L;

        /* "View.MemoryView":823
 *                 stop = shape
 *         else:
 *             if negative_step:             # <<<<<<<<<<<<<<
 *                 stop = -1
 *             else:
 */
        goto __pyx_L19;
      }

      /* "View.MemoryView":826
 *                 stop = -1
 *             else:
 *                 stop = shape             # <<<<<<<<<<<<<<
 * 
 *         if not have_step:
 */
      /*else*/ {
        __pyx_v_stop = __pyx_v_shape;
      }
      __pyx_L19:;
    }
    __pyx_L16:;

    /* "View.MemoryView":828
 *                 stop = shape
 * 
 *         if not have_step:             # <<<<<<<<<<<<<<
 *             step = 1
 * 
 */
    __pyx_t_2 = ((!(__pyx_v_have_step != 0)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":829
 * 
 *         if not have_step:
 *             step = 1             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_v_step = 1;

      /* "View.MemoryView":828
 *                 stop = shape
 * 
 *         if not have_step:             # <<<<<<<<<<<<<<
 *             step = 1
 * 
 */
    }

    /* "View.MemoryView":833
 * 
 *         with cython.cdivision(True):
 *             new_shape = (stop - start) // step             # <<<<<<<<<<<<<<
 * 
 *             if (stop - start) - step * new_shape:
 */
    __pyx_v_new_shape = ((__pyx_v_stop - __pyx_v_start) / __pyx_v_step);

    /* "View.MemoryView":835
 *             new_shape = (stop - start) // step
 * 
 *             if (stop - start) - step * new_shape:             # <<<<<<<<<<<<<<
 *                 new_shape += 1
 * 
 */
    __pyx_t_2 = (((__pyx_v_stop - __pyx_v_start) - (__pyx_v_step * __pyx_v_new_shape)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":836
 * 
 *             if (stop - start) - step * new_shape:
 *                 new_shape += 1             # <<<<<<<<<<<<<<
 * 
 *         if new_shape < 0:
 */
      __pyx_v_new_shape = (__pyx_v_new_shape + 1);

      /* "View.MemoryView":835
 *             new_shape = (stop - start) // step
 * 
 *             if (stop - start) - step * new_shape:             # <<<<<<<<<<<<<<
 *                 new_shape += 1
 * 
 */
    }

    /* "View.MemoryView":838
 *                 new_shape += 1
 * 
 *         if new_shape < 0:             # <<<<<<<<<<<<<<
 *             new_shape = 0
 * 
 */
    __pyx_t_2 = ((__pyx_v_new_shape < 0) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":839
 * 
 *         if new_shape < 0:
 *             new_shape = 0             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_v_new_shape = 0;

      /* "View.MemoryView":838
 *                 new_shape += 1
 * 
 *         if new_shape < 0:             # <<<<<<<<<<<<<<
 *             new_shape = 0
 * 
 */
    }

    /* "View.MemoryView":842
 * 
 * 
 *         dst.strides[new_ndim] = stride * step             # <<<<<<<<<<<<<<
 *         dst.shape[new_ndim] = new_shape
 *         dst.suboffsets[new_ndim] = suboffset
 */
    (__pyx_v_dst->strides[__pyx_v_new_ndim]) = (__pyx_v_stride * __pyx_v_step);

    /* "View.MemoryView":843
 * 
 *         dst.strides[new_ndim] = stride * step
 *         dst.shape[new_ndim] = new_shape             # <<<<<<<<<<<<<<
 *         dst.suboffsets[new_ndim] = suboffset
 * 
 */
    (__pyx_v_dst->shape[__pyx_v_new_ndim]) = __pyx_v_new_shape;

    /* "View.MemoryView":844
 *         dst.strides[new_ndim] = stride * step
 *         dst.shape[new_ndim] = new_shape
 *         dst.suboffsets[new_ndim] = suboffset             # <<<<<<<<<<<<<<
 * 
 * 
 */
    (__pyx_v_dst->suboffsets[__pyx_v_new_ndim]) = __pyx_v_suboffset;
  }
  __pyx_L3:;

  /* "View.MemoryView":847
 * 
 * 
 *     if suboffset_dim[0] < 0:             # <<<<<<<<<<<<<<
 *         dst.data += start * stride
 *     else:
 */
  __pyx_t_2 = (((__pyx_v_suboffset_dim[0]) < 0) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":848
 * 
 *     if suboffset_dim[0] < 0:
 *         dst.data += start * stride             # <<<<<<<<<<<<<<
 *     else:
 *         dst.suboffsets[suboffset_dim[0]] += start * stride
 */
    __pyx_v_dst->data = (__pyx_v_dst->data + (__pyx_v_start * __pyx_v_stride));

    /* "View.MemoryView":847
 * 
 * 
 *     if suboffset_dim[0] < 0:             # <<<<<<<<<<<<<<
 *         dst.data += start * stride
 *     else:
 */
    goto __pyx_L23;
  }

  /* "View.MemoryView":850
 *         dst.data += start * stride
 *     else:
 *         dst.suboffsets[suboffset_dim[0]] += start * stride             # <<<<<<<<<<<<<<
 * 
 *     if suboffset >= 0:
 */
  /*else*/ {
    __pyx_t_3 = (__pyx_v_suboffset_dim[0]);
    (__pyx_v_dst->suboffsets[__pyx_t_3]) = ((__pyx_v_dst->suboffsets[__pyx_t_3]) + (__pyx_v_start * __pyx_v_stride));
  }
  __pyx_L23:;

  /* "View.MemoryView":852
 *         dst.suboffsets[suboffset_dim[0]] += start * stride
 * 
 *     if suboffset >= 0:             # <<<<<<<<<<<<<<
 *         if not is_slice:
 *             if new_ndim == 0:
 */
  __pyx_t_2 = ((__pyx_v_suboffset >= 0) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":853
 * 
 *     if suboffset >= 0:
 *         if not is_slice:             # <<<<<<<<<<<<<<
 *             if new_ndim == 0:
 *                 dst.data = (<char **> dst.data)[0] + suboffset
 */
    __pyx_t_2 = ((!(__pyx_v_is_slice != 0)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":854
 *     if suboffset >= 0:
 *         if not is_slice:
 *             if new_ndim == 0:             # <<<<<<<<<<<<<<
 *                 dst.data = (<char **> dst.data)[0] + suboffset
 *             else:
 */
      __pyx_t_2 = ((__pyx_v_new_ndim == 0) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":855
 *         if not is_slice:
 *             if new_ndim == 0:
 *                 dst.data = (<char **> dst.data)[0] + suboffset             # <<<<<<<<<<<<<<
 *             else:
 *                 _err_dim(IndexError, "All dimensions preceding dimension %d "
 */
        __pyx_v_dst->data = ((((char **)__pyx_v_dst->data)[0]) + __pyx_v_suboffset);

        /* "View.MemoryView":854
 *     if suboffset >= 0:
 *         if not is_slice:
 *             if new_ndim == 0:             # <<<<<<<<<<<<<<
 *                 dst.data = (<char **> dst.data)[0] + suboffset
 *             else:
 */
        goto __pyx_L26;
      }

      /* "View.MemoryView":857
 *                 dst.data = (<char **> dst.data)[0] + suboffset
 *             else:
 *                 _err_dim(IndexError, "All dimensions preceding dimension %d "             # <<<<<<<<<<<<<<
 *                                      "must be indexed and not sliced", dim)
 *         else:
 */
      /*else*/ {

        /* "View.MemoryView":858
 *             else:
 *                 _err_dim(IndexError, "All dimensions preceding dimension %d "
 *                                      "must be indexed and not sliced", dim)             # <<<<<<<<<<<<<<
 *         else:
 *             suboffset_dim[0] = new_ndim
 */
        __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_IndexError, __pyx_k_All_dimensions_preceding_dimensi, __pyx_v_dim); if (unlikely(__pyx_t_3 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 857; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      }
      __pyx_L26:;

      /* "View.MemoryView":853
 * 
 *     if suboffset >= 0:
 *         if not is_slice:             # <<<<<<<<<<<<<<
 *             if new_ndim == 0:
 *                 dst.data = (<char **> dst.data)[0] + suboffset
 */
      goto __pyx_L25;
    }

    /* "View.MemoryView":860
 *                                      "must be indexed and not sliced", dim)
 *         else:
 *             suboffset_dim[0] = new_ndim             # <<<<<<<<<<<<<<
 * 
 *     return 0
 */
    /*else*/ {
      (__pyx_v_suboffset_dim[0]) = __pyx_v_new_ndim;
    }
    __pyx_L25:;

    /* "View.MemoryView":852
 *         dst.suboffsets[suboffset_dim[0]] += start * stride
 * 
 *     if suboffset >= 0:             # <<<<<<<<<<<<<<
 *         if not is_slice:
 *             if new_ndim == 0:
 */
  }

  /* "View.MemoryView":862
 *             suboffset_dim[0] = new_ndim
 * 
 *     return 0             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = 0;
  goto __pyx_L0;

  /* "View.MemoryView":765
 * 
 * @cname('__pyx_memoryview_slice_memviewslice')
 * cdef int slice_memviewslice(             # <<<<<<<<<<<<<<
 *         __Pyx_memviewslice *dst,
 *         Py_ssize_t shape, Py_ssize_t stride, Py_ssize_t suboffset,
 */

  /* function exit code */
  __pyx_L1_error:;
  {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();
    #endif
    __Pyx_AddTraceback("View.MemoryView.slice_memviewslice", __pyx_clineno, __pyx_lineno, __pyx_filename);
    #ifdef WITH_THREAD
    PyGILState_Release(__pyx_gilstate_save);
    #endif
  }
  __pyx_r = -1;
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":868
 * 
 * @cname('__pyx_pybuffer_index')
 * cdef char *pybuffer_index(Py_buffer *view, char *bufp, Py_ssize_t index,             # <<<<<<<<<<<<<<
 *                           Py_ssize_t dim) except NULL:
 *     cdef Py_ssize_t shape, stride, suboffset = -1
 */

static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, Py_ssize_t __pyx_v_index, Py_ssize_t __pyx_v_dim) {
  Py_ssize_t __pyx_v_shape;
  Py_ssize_t __pyx_v_stride;
  Py_ssize_t __pyx_v_suboffset;
  Py_ssize_t __pyx_v_itemsize;
  char *__pyx_v_resultp;
  char *__pyx_r;
  __Pyx_RefNannyDeclarations
  Py_ssize_t __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("pybuffer_index", 0);

  /* "View.MemoryView":870
 * cdef char *pybuffer_index(Py_buffer *view, char *bufp, Py_ssize_t index,
 *                           Py_ssize_t dim) except NULL:
 *     cdef Py_ssize_t shape, stride, suboffset = -1             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t itemsize = view.itemsize
 *     cdef char *resultp
 */
  __pyx_v_suboffset = -1L;

  /* "View.MemoryView":871
 *                           Py_ssize_t dim) except NULL:
 *     cdef Py_ssize_t shape, stride, suboffset = -1
 *     cdef Py_ssize_t itemsize = view.itemsize             # <<<<<<<<<<<<<<
 *     cdef char *resultp
 * 
 */
  __pyx_t_1 = __pyx_v_view->itemsize;
  __pyx_v_itemsize = __pyx_t_1;

  /* "View.MemoryView":874
 *     cdef char *resultp
 * 
 *     if view.ndim == 0:             # <<<<<<<<<<<<<<
 *         shape = view.len / itemsize
 *         stride = itemsize
 */
  __pyx_t_2 = ((__pyx_v_view->ndim == 0) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":875
 * 
 *     if view.ndim == 0:
 *         shape = view.len / itemsize             # <<<<<<<<<<<<<<
 *         stride = itemsize
 *     else:
 */
    if (unlikely(__pyx_v_itemsize == 0)) {
      PyErr_SetString(PyExc_ZeroDivisionError, "integer division or modulo by zero");
      {__pyx_filename = __pyx_f[1]; __pyx_lineno = 875; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
    else if (sizeof(Py_ssize_t) == sizeof(long) && (!(((Py_ssize_t)-1) > 0)) && unlikely(__pyx_v_itemsize == (Py_ssize_t)-1)  && unlikely(UNARY_NEG_WOULD_OVERFLOW(__pyx_v_view->len))) {
      PyErr_SetString(PyExc_OverflowError, "value too large to perform division");
      {__pyx_filename = __pyx_f[1]; __pyx_lineno = 875; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
    __pyx_v_shape = __Pyx_div_Py_ssize_t(__pyx_v_view->len, __pyx_v_itemsize);

    /* "View.MemoryView":876
 *     if view.ndim == 0:
 *         shape = view.len / itemsize
 *         stride = itemsize             # <<<<<<<<<<<<<<
 *     else:
 *         shape = view.shape[dim]
 */
    __pyx_v_stride = __pyx_v_itemsize;

    /* "View.MemoryView":874
 *     cdef char *resultp
 * 
 *     if view.ndim == 0:             # <<<<<<<<<<<<<<
 *         shape = view.len / itemsize
 *         stride = itemsize
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":878
 *         stride = itemsize
 *     else:
 *         shape = view.shape[dim]             # <<<<<<<<<<<<<<
 *         stride = view.strides[dim]
 *         if view.suboffsets != NULL:
 */
  /*else*/ {
    __pyx_v_shape = (__pyx_v_view->shape[__pyx_v_dim]);

    /* "View.MemoryView":879
 *     else:
 *         shape = view.shape[dim]
 *         stride = view.strides[dim]             # <<<<<<<<<<<<<<
 *         if view.suboffsets != NULL:
 *             suboffset = view.suboffsets[dim]
 */
    __pyx_v_stride = (__pyx_v_view->strides[__pyx_v_dim]);

    /* "View.MemoryView":880
 *         shape = view.shape[dim]
 *         stride = view.strides[dim]
 *         if view.suboffsets != NULL:             # <<<<<<<<<<<<<<
 *             suboffset = view.suboffsets[dim]
 * 
 */
    __pyx_t_2 = ((__pyx_v_view->suboffsets != NULL) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":881
 *         stride = view.strides[dim]
 *         if view.suboffsets != NULL:
 *             suboffset = view.suboffsets[dim]             # <<<<<<<<<<<<<<
 * 
 *     if index < 0:
 */
      __pyx_v_suboffset = (__pyx_v_view->suboffsets[__pyx_v_dim]);

      /* "View.MemoryView":880
 *         shape = view.shape[dim]
 *         stride = view.strides[dim]
 *         if view.suboffsets != NULL:             # <<<<<<<<<<<<<<
 *             suboffset = view.suboffsets[dim]
 * 
 */
    }
  }
  __pyx_L3:;

  /* "View.MemoryView":883
 *             suboffset = view.suboffsets[dim]
 * 
 *     if index < 0:             # <<<<<<<<<<<<<<
 *         index += view.shape[dim]
 *         if index < 0:
 */
  __pyx_t_2 = ((__pyx_v_index < 0) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":884
 * 
 *     if index < 0:
 *         index += view.shape[dim]             # <<<<<<<<<<<<<<
 *         if index < 0:
 *             raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 */
    __pyx_v_index = (__pyx_v_index + (__pyx_v_view->shape[__pyx_v_dim]));

    /* "View.MemoryView":885
 *     if index < 0:
 *         index += view.shape[dim]
 *         if index < 0:             # <<<<<<<<<<<<<<
 *             raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 */
    __pyx_t_2 = ((__pyx_v_index < 0) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":886
 *         index += view.shape[dim]
 *         if index < 0:
 *             raise IndexError("Out of bounds on buffer access (axis %d)" % dim)             # <<<<<<<<<<<<<<
 * 
 *     if index >= shape:
 */
      __pyx_t_3 = PyInt_FromSsize_t(__pyx_v_dim); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 886; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_3);
      __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Out_of_bounds_on_buffer_access_a, __pyx_t_3); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 886; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_4);
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 886; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_3);
      __Pyx_GIVEREF(__pyx_t_4);
      PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_4);
      __pyx_t_4 = 0;
      __pyx_t_4 = __Pyx_PyObject_Call(__pyx_builtin_IndexError, __pyx_t_3, NULL); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 886; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_4);
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      __Pyx_Raise(__pyx_t_4, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
      {__pyx_filename = __pyx_f[1]; __pyx_lineno = 886; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "View.MemoryView":885
 *     if index < 0:
 *         index += view.shape[dim]
 *         if index < 0:             # <<<<<<<<<<<<<<
 *             raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 */
    }

    /* "View.MemoryView":883
 *             suboffset = view.suboffsets[dim]
 * 
 *     if index < 0:             # <<<<<<<<<<<<<<
 *         index += view.shape[dim]
 *         if index < 0:
 */
  }

  /* "View.MemoryView":888
 *             raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 *     if index >= shape:             # <<<<<<<<<<<<<<
 *         raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 */
  __pyx_t_2 = ((__pyx_v_index >= __pyx_v_shape) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":889
 * 
 *     if index >= shape:
 *         raise IndexError("Out of bounds on buffer access (axis %d)" % dim)             # <<<<<<<<<<<<<<
 * 
 *     resultp = bufp + index * stride
 */
    __pyx_t_4 = PyInt_FromSsize_t(__pyx_v_dim); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 889; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_3 = __Pyx_PyString_Format(__pyx_kp_s_Out_of_bounds_on_buffer_access_a, __pyx_t_4); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 889; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_t_4 = PyTuple_New(1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 889; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_3);
    __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_IndexError, __pyx_t_4, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 889; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    {__pyx_filename = __pyx_f[1]; __pyx_lineno = 889; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":888
 *             raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 *     if index >= shape:             # <<<<<<<<<<<<<<
 *         raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 */
  }

  /* "View.MemoryView":891
 *         raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 *     resultp = bufp + index * stride             # <<<<<<<<<<<<<<
 *     if suboffset >= 0:
 *         resultp = (<char **> resultp)[0] + suboffset
 */
  __pyx_v_resultp = (__pyx_v_bufp + (__pyx_v_index * __pyx_v_stride));

  /* "View.MemoryView":892
 * 
 *     resultp = bufp + index * stride
 *     if suboffset >= 0:             # <<<<<<<<<<<<<<
 *         resultp = (<char **> resultp)[0] + suboffset
 * 
 */
  __pyx_t_2 = ((__pyx_v_suboffset >= 0) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":893
 *     resultp = bufp + index * stride
 *     if suboffset >= 0:
 *         resultp = (<char **> resultp)[0] + suboffset             # <<<<<<<<<<<<<<
 * 
 *     return resultp
 */
    __pyx_v_resultp = ((((char **)__pyx_v_resultp)[0]) + __pyx_v_suboffset);

    /* "View.MemoryView":892
 * 
 *     resultp = bufp + index * stride
 *     if suboffset >= 0:             # <<<<<<<<<<<<<<
 *         resultp = (<char **> resultp)[0] + suboffset
 * 
 */
  }

  /* "View.MemoryView":895
 *         resultp = (<char **> resultp)[0] + suboffset
 * 
 *     return resultp             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = __pyx_v_resultp;
  goto __pyx_L0;

  /* "View.MemoryView":868
 * 
 * @cname('__pyx_pybuffer_index')
 * cdef char *pybuffer_index(Py_buffer *view, char *bufp, Py_ssize_t index,             # <<<<<<<<<<<<<<
 *                           Py_ssize_t dim) except NULL:
 *     cdef Py_ssize_t shape, stride, suboffset = -1
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_AddTraceback("View.MemoryView.pybuffer_index", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":901
 * 
 * @cname('__pyx_memslice_transpose')
 * cdef int transpose_memslice(__Pyx_memviewslice *memslice) nogil except 0:             # <<<<<<<<<<<<<<
 *     cdef int ndim = memslice.memview.view.ndim
 * 
 */

static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) {
  int __pyx_v_ndim;
  Py_ssize_t *__pyx_v_shape;
  Py_ssize_t *__pyx_v_strides;
  int __pyx_v_i;
  int __pyx_v_j;
  int __pyx_r;
  int __pyx_t_1;
  Py_ssize_t *__pyx_t_2;
  long __pyx_t_3;
  Py_ssize_t __pyx_t_4;
  Py_ssize_t __pyx_t_5;
  int __pyx_t_6;
  int __pyx_t_7;
  int __pyx_t_8;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;

  /* "View.MemoryView":902
 * @cname('__pyx_memslice_transpose')
 * cdef int transpose_memslice(__Pyx_memviewslice *memslice) nogil except 0:
 *     cdef int ndim = memslice.memview.view.ndim             # <<<<<<<<<<<<<<
 * 
 *     cdef Py_ssize_t *shape = memslice.shape
 */
  __pyx_t_1 = __pyx_v_memslice->memview->view.ndim;
  __pyx_v_ndim = __pyx_t_1;

  /* "View.MemoryView":904
 *     cdef int ndim = memslice.memview.view.ndim
 * 
 *     cdef Py_ssize_t *shape = memslice.shape             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t *strides = memslice.strides
 * 
 */
  __pyx_t_2 = __pyx_v_memslice->shape;
  __pyx_v_shape = __pyx_t_2;

  /* "View.MemoryView":905
 * 
 *     cdef Py_ssize_t *shape = memslice.shape
 *     cdef Py_ssize_t *strides = memslice.strides             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_2 = __pyx_v_memslice->strides;
  __pyx_v_strides = __pyx_t_2;

  /* "View.MemoryView":909
 * 
 *     cdef int i, j
 *     for i in range(ndim / 2):             # <<<<<<<<<<<<<<
 *         j = ndim - 1 - i
 *         strides[i], strides[j] = strides[j], strides[i]
 */
  __pyx_t_3 = __Pyx_div_long(__pyx_v_ndim, 2);
  for (__pyx_t_1 = 0; __pyx_t_1 < __pyx_t_3; __pyx_t_1+=1) {
    __pyx_v_i = __pyx_t_1;

    /* "View.MemoryView":910
 *     cdef int i, j
 *     for i in range(ndim / 2):
 *         j = ndim - 1 - i             # <<<<<<<<<<<<<<
 *         strides[i], strides[j] = strides[j], strides[i]
 *         shape[i], shape[j] = shape[j], shape[i]
 */
    __pyx_v_j = ((__pyx_v_ndim - 1) - __pyx_v_i);

    /* "View.MemoryView":911
 *     for i in range(ndim / 2):
 *         j = ndim - 1 - i
 *         strides[i], strides[j] = strides[j], strides[i]             # <<<<<<<<<<<<<<
 *         shape[i], shape[j] = shape[j], shape[i]
 * 
 */
    __pyx_t_4 = (__pyx_v_strides[__pyx_v_j]);
    __pyx_t_5 = (__pyx_v_strides[__pyx_v_i]);
    (__pyx_v_strides[__pyx_v_i]) = __pyx_t_4;
    (__pyx_v_strides[__pyx_v_j]) = __pyx_t_5;

    /* "View.MemoryView":912
 *         j = ndim - 1 - i
 *         strides[i], strides[j] = strides[j], strides[i]
 *         shape[i], shape[j] = shape[j], shape[i]             # <<<<<<<<<<<<<<
 * 
 *         if memslice.suboffsets[i] >= 0 or memslice.suboffsets[j] >= 0:
 */
    __pyx_t_5 = (__pyx_v_shape[__pyx_v_j]);
    __pyx_t_4 = (__pyx_v_shape[__pyx_v_i]);
    (__pyx_v_shape[__pyx_v_i]) = __pyx_t_5;
    (__pyx_v_shape[__pyx_v_j]) = __pyx_t_4;

    /* "View.MemoryView":914
 *         shape[i], shape[j] = shape[j], shape[i]
 * 
 *         if memslice.suboffsets[i] >= 0 or memslice.suboffsets[j] >= 0:             # <<<<<<<<<<<<<<
 *             _err(ValueError, "Cannot transpose memoryview with indirect dimensions")
 * 
 */
    __pyx_t_7 = (((__pyx_v_memslice->suboffsets[__pyx_v_i]) >= 0) != 0);
    if (!__pyx_t_7) {
    } else {
      __pyx_t_6 = __pyx_t_7;
      goto __pyx_L6_bool_binop_done;
    }
    __pyx_t_7 = (((__pyx_v_memslice->suboffsets[__pyx_v_j]) >= 0) != 0);
    __pyx_t_6 = __pyx_t_7;
    __pyx_L6_bool_binop_done:;
    if (__pyx_t_6) {

      /* "View.MemoryView":915
 * 
 *         if memslice.suboffsets[i] >= 0 or memslice.suboffsets[j] >= 0:
 *             _err(ValueError, "Cannot transpose memoryview with indirect dimensions")             # <<<<<<<<<<<<<<
 * 
 *     return 1
 */
      __pyx_t_8 = __pyx_memoryview_err(__pyx_builtin_ValueError, __pyx_k_Cannot_transpose_memoryview_with); if (unlikely(__pyx_t_8 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 915; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "View.MemoryView":914
 *         shape[i], shape[j] = shape[j], shape[i]
 * 
 *         if memslice.suboffsets[i] >= 0 or memslice.suboffsets[j] >= 0:             # <<<<<<<<<<<<<<
 *             _err(ValueError, "Cannot transpose memoryview with indirect dimensions")
 * 
 */
    }
  }

  /* "View.MemoryView":917
 *             _err(ValueError, "Cannot transpose memoryview with indirect dimensions")
 * 
 *     return 1             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = 1;
  goto __pyx_L0;

  /* "View.MemoryView":901
 * 
 * @cname('__pyx_memslice_transpose')
 * cdef int transpose_memslice(__Pyx_memviewslice *memslice) nogil except 0:             # <<<<<<<<<<<<<<
 *     cdef int ndim = memslice.memview.view.ndim
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();
    #endif
    __Pyx_AddTraceback("View.MemoryView.transpose_memslice", __pyx_clineno, __pyx_lineno, __pyx_filename);
    #ifdef WITH_THREAD
    PyGILState_Release(__pyx_gilstate_save);
    #endif
  }
  __pyx_r = 0;
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":934
 *     cdef int (*to_dtype_func)(char *, object) except 0
 * 
 *     def __dealloc__(self):             # <<<<<<<<<<<<<<
 *         __PYX_XDEC_MEMVIEW(&self.from_slice, 1)
 * 
 */

/* Python wrapper */
static void __pyx_memoryviewslice___dealloc__(PyObject *__pyx_v_self); /*proto*/
static void __pyx_memoryviewslice___dealloc__(PyObject *__pyx_v_self) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__dealloc__ (wrapper)", 0);
  __pyx_memoryviewslice___pyx_pf_15View_dot_MemoryView_16_memoryviewslice___dealloc__(((struct __pyx_memoryviewslice_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

static void __pyx_memoryviewslice___pyx_pf_15View_dot_MemoryView_16_memoryviewslice___dealloc__(struct __pyx_memoryviewslice_obj *__pyx_v_self) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__dealloc__", 0);

  /* "View.MemoryView":935
 * 
 *     def __dealloc__(self):
 *         __PYX_XDEC_MEMVIEW(&self.from_slice, 1)             # <<<<<<<<<<<<<<
 * 
 *     cdef convert_item_to_object(self, char *itemp):
 */
  __PYX_XDEC_MEMVIEW((&__pyx_v_self->from_slice), 1);

  /* "View.MemoryView":934
 *     cdef int (*to_dtype_func)(char *, object) except 0
 * 
 *     def __dealloc__(self):             # <<<<<<<<<<<<<<
 *         __PYX_XDEC_MEMVIEW(&self.from_slice, 1)
 * 
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "View.MemoryView":937
 *         __PYX_XDEC_MEMVIEW(&self.from_slice, 1)
 * 
 *     cdef convert_item_to_object(self, char *itemp):             # <<<<<<<<<<<<<<
 *         if self.to_object_func != NULL:
 *             return self.to_object_func(itemp)
 */

static PyObject *__pyx_memoryviewslice_convert_item_to_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("convert_item_to_object", 0);

  /* "View.MemoryView":938
 * 
 *     cdef convert_item_to_object(self, char *itemp):
 *         if self.to_object_func != NULL:             # <<<<<<<<<<<<<<
 *             return self.to_object_func(itemp)
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_self->to_object_func != NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":939
 *     cdef convert_item_to_object(self, char *itemp):
 *         if self.to_object_func != NULL:
 *             return self.to_object_func(itemp)             # <<<<<<<<<<<<<<
 *         else:
 *             return memoryview.convert_item_to_object(self, itemp)
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_2 = __pyx_v_self->to_object_func(__pyx_v_itemp); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 939; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_r = __pyx_t_2;
    __pyx_t_2 = 0;
    goto __pyx_L0;

    /* "View.MemoryView":938
 * 
 *     cdef convert_item_to_object(self, char *itemp):
 *         if self.to_object_func != NULL:             # <<<<<<<<<<<<<<
 *             return self.to_object_func(itemp)
 *         else:
 */
  }

  /* "View.MemoryView":941
 *             return self.to_object_func(itemp)
 *         else:
 *             return memoryview.convert_item_to_object(self, itemp)             # <<<<<<<<<<<<<<
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):
 */
  /*else*/ {
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_2 = __pyx_memoryview_convert_item_to_object(((struct __pyx_memoryview_obj *)__pyx_v_self), __pyx_v_itemp); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 941; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_r = __pyx_t_2;
    __pyx_t_2 = 0;
    goto __pyx_L0;
  }

  /* "View.MemoryView":937
 *         __PYX_XDEC_MEMVIEW(&self.from_slice, 1)
 * 
 *     cdef convert_item_to_object(self, char *itemp):             # <<<<<<<<<<<<<<
 *         if self.to_object_func != NULL:
 *             return self.to_object_func(itemp)
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView._memoryviewslice.convert_item_to_object", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":943
 *             return memoryview.convert_item_to_object(self, itemp)
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):             # <<<<<<<<<<<<<<
 *         if self.to_dtype_func != NULL:
 *             self.to_dtype_func(itemp, value)
 */

static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("assign_item_from_object", 0);

  /* "View.MemoryView":944
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):
 *         if self.to_dtype_func != NULL:             # <<<<<<<<<<<<<<
 *             self.to_dtype_func(itemp, value)
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_self->to_dtype_func != NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":945
 *     cdef assign_item_from_object(self, char *itemp, object value):
 *         if self.to_dtype_func != NULL:
 *             self.to_dtype_func(itemp, value)             # <<<<<<<<<<<<<<
 *         else:
 *             memoryview.assign_item_from_object(self, itemp, value)
 */
    __pyx_t_2 = __pyx_v_self->to_dtype_func(__pyx_v_itemp, __pyx_v_value); if (unlikely(__pyx_t_2 == 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 945; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":944
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):
 *         if self.to_dtype_func != NULL:             # <<<<<<<<<<<<<<
 *             self.to_dtype_func(itemp, value)
 *         else:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":947
 *             self.to_dtype_func(itemp, value)
 *         else:
 *             memoryview.assign_item_from_object(self, itemp, value)             # <<<<<<<<<<<<<<
 * 
 *     property base:
 */
  /*else*/ {
    __pyx_t_3 = __pyx_memoryview_assign_item_from_object(((struct __pyx_memoryview_obj *)__pyx_v_self), __pyx_v_itemp, __pyx_v_value); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 947; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  }
  __pyx_L3:;

  /* "View.MemoryView":943
 *             return memoryview.convert_item_to_object(self, itemp)
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):             # <<<<<<<<<<<<<<
 *         if self.to_dtype_func != NULL:
 *             self.to_dtype_func(itemp, value)
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView._memoryviewslice.assign_item_from_object", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":951
 *     property base:
 *         @cname('__pyx_memoryviewslice__get__base')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             return self.from_object
 * 
 */

/* Python wrapper */
static PyObject *__pyx_memoryviewslice__get__base(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryviewslice__get__base(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_16_memoryviewslice_4base___get__(((struct __pyx_memoryviewslice_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_16_memoryviewslice_4base___get__(struct __pyx_memoryviewslice_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":952
 *         @cname('__pyx_memoryviewslice__get__base')
 *         def __get__(self):
 *             return self.from_object             # <<<<<<<<<<<<<<
 * 
 *     __pyx_getbuffer = capsule(<void *> &__pyx_memoryview_getbuffer, "getbuffer(obj, view, flags)")
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_self->from_object);
  __pyx_r = __pyx_v_self->from_object;
  goto __pyx_L0;

  /* "View.MemoryView":951
 *     property base:
 *         @cname('__pyx_memoryviewslice__get__base')
 *         def __get__(self):             # <<<<<<<<<<<<<<
 *             return self.from_object
 * 
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":958
 * 
 * @cname('__pyx_memoryview_fromslice')
 * cdef memoryview_fromslice(__Pyx_memviewslice memviewslice,             # <<<<<<<<<<<<<<
 *                           int ndim,
 *                           object (*to_object_func)(char *),
 */

static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewslice, int __pyx_v_ndim, PyObject *(*__pyx_v_to_object_func)(char *), int (*__pyx_v_to_dtype_func)(char *, PyObject *), int __pyx_v_dtype_is_object) {
  struct __pyx_memoryviewslice_obj *__pyx_v_result = 0;
  Py_ssize_t __pyx_v_suboffset;
  PyObject *__pyx_v_length = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  __Pyx_TypeInfo *__pyx_t_4;
  Py_buffer __pyx_t_5;
  Py_ssize_t *__pyx_t_6;
  Py_ssize_t *__pyx_t_7;
  Py_ssize_t *__pyx_t_8;
  Py_ssize_t __pyx_t_9;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("memoryview_fromslice", 0);

  /* "View.MemoryView":966
 *     cdef _memoryviewslice result
 * 
 *     if <PyObject *> memviewslice.memview == Py_None:             # <<<<<<<<<<<<<<
 *         return None
 * 
 */
  __pyx_t_1 = ((((PyObject *)__pyx_v_memviewslice.memview) == Py_None) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":967
 * 
 *     if <PyObject *> memviewslice.memview == Py_None:
 *         return None             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __Pyx_XDECREF(__pyx_r);
    __Pyx_INCREF(Py_None);
    __pyx_r = Py_None;
    goto __pyx_L0;

    /* "View.MemoryView":966
 *     cdef _memoryviewslice result
 * 
 *     if <PyObject *> memviewslice.memview == Py_None:             # <<<<<<<<<<<<<<
 *         return None
 * 
 */
  }

  /* "View.MemoryView":972
 * 
 * 
 *     result = _memoryviewslice(None, 0, dtype_is_object)             # <<<<<<<<<<<<<<
 * 
 *     result.from_slice = memviewslice
 */
  __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_dtype_is_object); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 972; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = PyTuple_New(3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 972; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_INCREF(Py_None);
  __Pyx_GIVEREF(Py_None);
  PyTuple_SET_ITEM(__pyx_t_3, 0, Py_None);
  __Pyx_INCREF(__pyx_int_0);
  __Pyx_GIVEREF(__pyx_int_0);
  PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_int_0);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_t_2);
  __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_memoryviewslice_type), __pyx_t_3, NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 972; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_v_result = ((struct __pyx_memoryviewslice_obj *)__pyx_t_2);
  __pyx_t_2 = 0;

  /* "View.MemoryView":974
 *     result = _memoryviewslice(None, 0, dtype_is_object)
 * 
 *     result.from_slice = memviewslice             # <<<<<<<<<<<<<<
 *     __PYX_INC_MEMVIEW(&memviewslice, 1)
 * 
 */
  __pyx_v_result->from_slice = __pyx_v_memviewslice;

  /* "View.MemoryView":975
 * 
 *     result.from_slice = memviewslice
 *     __PYX_INC_MEMVIEW(&memviewslice, 1)             # <<<<<<<<<<<<<<
 * 
 *     result.from_object = (<memoryview> memviewslice.memview).base
 */
  __PYX_INC_MEMVIEW((&__pyx_v_memviewslice), 1);

  /* "View.MemoryView":977
 *     __PYX_INC_MEMVIEW(&memviewslice, 1)
 * 
 *     result.from_object = (<memoryview> memviewslice.memview).base             # <<<<<<<<<<<<<<
 *     result.typeinfo = memviewslice.memview.typeinfo
 * 
 */
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_memviewslice.memview), __pyx_n_s_base); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 977; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_2);
  __Pyx_GOTREF(__pyx_v_result->from_object);
  __Pyx_DECREF(__pyx_v_result->from_object);
  __pyx_v_result->from_object = __pyx_t_2;
  __pyx_t_2 = 0;

  /* "View.MemoryView":978
 * 
 *     result.from_object = (<memoryview> memviewslice.memview).base
 *     result.typeinfo = memviewslice.memview.typeinfo             # <<<<<<<<<<<<<<
 * 
 *     result.view = memviewslice.memview.view
 */
  __pyx_t_4 = __pyx_v_memviewslice.memview->typeinfo;
  __pyx_v_result->__pyx_base.typeinfo = __pyx_t_4;

  /* "View.MemoryView":980
 *     result.typeinfo = memviewslice.memview.typeinfo
 * 
 *     result.view = memviewslice.memview.view             # <<<<<<<<<<<<<<
 *     result.view.buf = <void *> memviewslice.data
 *     result.view.ndim = ndim
 */
  __pyx_t_5 = __pyx_v_memviewslice.memview->view;
  __pyx_v_result->__pyx_base.view = __pyx_t_5;

  /* "View.MemoryView":981
 * 
 *     result.view = memviewslice.memview.view
 *     result.view.buf = <void *> memviewslice.data             # <<<<<<<<<<<<<<
 *     result.view.ndim = ndim
 *     (<__pyx_buffer *> &result.view).obj = Py_None
 */
  __pyx_v_result->__pyx_base.view.buf = ((void *)__pyx_v_memviewslice.data);

  /* "View.MemoryView":982
 *     result.view = memviewslice.memview.view
 *     result.view.buf = <void *> memviewslice.data
 *     result.view.ndim = ndim             # <<<<<<<<<<<<<<
 *     (<__pyx_buffer *> &result.view).obj = Py_None
 *     Py_INCREF(Py_None)
 */
  __pyx_v_result->__pyx_base.view.ndim = __pyx_v_ndim;

  /* "View.MemoryView":983
 *     result.view.buf = <void *> memviewslice.data
 *     result.view.ndim = ndim
 *     (<__pyx_buffer *> &result.view).obj = Py_None             # <<<<<<<<<<<<<<
 *     Py_INCREF(Py_None)
 * 
 */
  ((Py_buffer *)(&__pyx_v_result->__pyx_base.view))->obj = Py_None;

  /* "View.MemoryView":984
 *     result.view.ndim = ndim
 *     (<__pyx_buffer *> &result.view).obj = Py_None
 *     Py_INCREF(Py_None)             # <<<<<<<<<<<<<<
 * 
 *     result.flags = PyBUF_RECORDS
 */
  Py_INCREF(Py_None);

  /* "View.MemoryView":986
 *     Py_INCREF(Py_None)
 * 
 *     result.flags = PyBUF_RECORDS             # <<<<<<<<<<<<<<
 * 
 *     result.view.shape = <Py_ssize_t *> result.from_slice.shape
 */
  __pyx_v_result->__pyx_base.flags = PyBUF_RECORDS;

  /* "View.MemoryView":988
 *     result.flags = PyBUF_RECORDS
 * 
 *     result.view.shape = <Py_ssize_t *> result.from_slice.shape             # <<<<<<<<<<<<<<
 *     result.view.strides = <Py_ssize_t *> result.from_slice.strides
 * 
 */
  __pyx_v_result->__pyx_base.view.shape = ((Py_ssize_t *)__pyx_v_result->from_slice.shape);

  /* "View.MemoryView":989
 * 
 *     result.view.shape = <Py_ssize_t *> result.from_slice.shape
 *     result.view.strides = <Py_ssize_t *> result.from_slice.strides             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_v_result->__pyx_base.view.strides = ((Py_ssize_t *)__pyx_v_result->from_slice.strides);

  /* "View.MemoryView":992
 * 
 * 
 *     result.view.suboffsets = NULL             # <<<<<<<<<<<<<<
 *     for suboffset in result.from_slice.suboffsets[:ndim]:
 *         if suboffset >= 0:
 */
  __pyx_v_result->__pyx_base.view.suboffsets = NULL;

  /* "View.MemoryView":993
 * 
 *     result.view.suboffsets = NULL
 *     for suboffset in result.from_slice.suboffsets[:ndim]:             # <<<<<<<<<<<<<<
 *         if suboffset >= 0:
 *             result.view.suboffsets = <Py_ssize_t *> result.from_slice.suboffsets
 */
  __pyx_t_7 = (__pyx_v_result->from_slice.suboffsets + __pyx_v_ndim);
  for (__pyx_t_8 = __pyx_v_result->from_slice.suboffsets; __pyx_t_8 < __pyx_t_7; __pyx_t_8++) {
    __pyx_t_6 = __pyx_t_8;
    __pyx_v_suboffset = (__pyx_t_6[0]);

    /* "View.MemoryView":994
 *     result.view.suboffsets = NULL
 *     for suboffset in result.from_slice.suboffsets[:ndim]:
 *         if suboffset >= 0:             # <<<<<<<<<<<<<<
 *             result.view.suboffsets = <Py_ssize_t *> result.from_slice.suboffsets
 *             break
 */
    __pyx_t_1 = ((__pyx_v_suboffset >= 0) != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":995
 *     for suboffset in result.from_slice.suboffsets[:ndim]:
 *         if suboffset >= 0:
 *             result.view.suboffsets = <Py_ssize_t *> result.from_slice.suboffsets             # <<<<<<<<<<<<<<
 *             break
 * 
 */
      __pyx_v_result->__pyx_base.view.suboffsets = ((Py_ssize_t *)__pyx_v_result->from_slice.suboffsets);

      /* "View.MemoryView":996
 *         if suboffset >= 0:
 *             result.view.suboffsets = <Py_ssize_t *> result.from_slice.suboffsets
 *             break             # <<<<<<<<<<<<<<
 * 
 *     result.view.len = result.view.itemsize
 */
      goto __pyx_L5_break;

      /* "View.MemoryView":994
 *     result.view.suboffsets = NULL
 *     for suboffset in result.from_slice.suboffsets[:ndim]:
 *         if suboffset >= 0:             # <<<<<<<<<<<<<<
 *             result.view.suboffsets = <Py_ssize_t *> result.from_slice.suboffsets
 *             break
 */
    }
  }
  __pyx_L5_break:;

  /* "View.MemoryView":998
 *             break
 * 
 *     result.view.len = result.view.itemsize             # <<<<<<<<<<<<<<
 *     for length in result.view.shape[:ndim]:
 *         result.view.len *= length
 */
  __pyx_t_9 = __pyx_v_result->__pyx_base.view.itemsize;
  __pyx_v_result->__pyx_base.view.len = __pyx_t_9;

  /* "View.MemoryView":999
 * 
 *     result.view.len = result.view.itemsize
 *     for length in result.view.shape[:ndim]:             # <<<<<<<<<<<<<<
 *         result.view.len *= length
 * 
 */
  __pyx_t_7 = (__pyx_v_result->__pyx_base.view.shape + __pyx_v_ndim);
  for (__pyx_t_8 = __pyx_v_result->__pyx_base.view.shape; __pyx_t_8 < __pyx_t_7; __pyx_t_8++) {
    __pyx_t_6 = __pyx_t_8;
    __pyx_t_2 = PyInt_FromSsize_t((__pyx_t_6[0])); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 999; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_XDECREF_SET(__pyx_v_length, __pyx_t_2);
    __pyx_t_2 = 0;

    /* "View.MemoryView":1000
 *     result.view.len = result.view.itemsize
 *     for length in result.view.shape[:ndim]:
 *         result.view.len *= length             # <<<<<<<<<<<<<<
 * 
 *     result.to_object_func = to_object_func
 */
    __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_result->__pyx_base.view.len); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1000; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = PyNumber_InPlaceMultiply(__pyx_t_2, __pyx_v_length); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1000; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_9 = __Pyx_PyIndex_AsSsize_t(__pyx_t_3); if (unlikely((__pyx_t_9 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1000; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_v_result->__pyx_base.view.len = __pyx_t_9;
  }

  /* "View.MemoryView":1002
 *         result.view.len *= length
 * 
 *     result.to_object_func = to_object_func             # <<<<<<<<<<<<<<
 *     result.to_dtype_func = to_dtype_func
 * 
 */
  __pyx_v_result->to_object_func = __pyx_v_to_object_func;

  /* "View.MemoryView":1003
 * 
 *     result.to_object_func = to_object_func
 *     result.to_dtype_func = to_dtype_func             # <<<<<<<<<<<<<<
 * 
 *     return result
 */
  __pyx_v_result->to_dtype_func = __pyx_v_to_dtype_func;

  /* "View.MemoryView":1005
 *     result.to_dtype_func = to_dtype_func
 * 
 *     return result             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_get_slice_from_memoryview')
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(((PyObject *)__pyx_v_result));
  __pyx_r = ((PyObject *)__pyx_v_result);
  goto __pyx_L0;

  /* "View.MemoryView":958
 * 
 * @cname('__pyx_memoryview_fromslice')
 * cdef memoryview_fromslice(__Pyx_memviewslice memviewslice,             # <<<<<<<<<<<<<<
 *                           int ndim,
 *                           object (*to_object_func)(char *),
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview_fromslice", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_result);
  __Pyx_XDECREF(__pyx_v_length);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":1008
 * 
 * @cname('__pyx_memoryview_get_slice_from_memoryview')
 * cdef __Pyx_memviewslice *get_slice_from_memview(memoryview memview,             # <<<<<<<<<<<<<<
 *                                                    __Pyx_memviewslice *mslice):
 *     cdef _memoryviewslice obj
 */

static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __pyx_memoryview_obj *__pyx_v_memview, __Pyx_memviewslice *__pyx_v_mslice) {
  struct __pyx_memoryviewslice_obj *__pyx_v_obj = 0;
  __Pyx_memviewslice *__pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("get_slice_from_memview", 0);

  /* "View.MemoryView":1011
 *                                                    __Pyx_memviewslice *mslice):
 *     cdef _memoryviewslice obj
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         obj = memview
 *         return &obj.from_slice
 */
  __pyx_t_1 = __Pyx_TypeCheck(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type); 
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1012
 *     cdef _memoryviewslice obj
 *     if isinstance(memview, _memoryviewslice):
 *         obj = memview             # <<<<<<<<<<<<<<
 *         return &obj.from_slice
 *     else:
 */
    if (!(likely(((((PyObject *)__pyx_v_memview)) == Py_None) || likely(__Pyx_TypeTest(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type))))) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1012; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_t_3 = ((PyObject *)__pyx_v_memview);
    __Pyx_INCREF(__pyx_t_3);
    __pyx_v_obj = ((struct __pyx_memoryviewslice_obj *)__pyx_t_3);
    __pyx_t_3 = 0;

    /* "View.MemoryView":1013
 *     if isinstance(memview, _memoryviewslice):
 *         obj = memview
 *         return &obj.from_slice             # <<<<<<<<<<<<<<
 *     else:
 *         slice_copy(memview, mslice)
 */
    __pyx_r = (&__pyx_v_obj->from_slice);
    goto __pyx_L0;

    /* "View.MemoryView":1011
 *                                                    __Pyx_memviewslice *mslice):
 *     cdef _memoryviewslice obj
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         obj = memview
 *         return &obj.from_slice
 */
  }

  /* "View.MemoryView":1015
 *         return &obj.from_slice
 *     else:
 *         slice_copy(memview, mslice)             # <<<<<<<<<<<<<<
 *         return mslice
 * 
 */
  /*else*/ {
    __pyx_memoryview_slice_copy(__pyx_v_memview, __pyx_v_mslice);

    /* "View.MemoryView":1016
 *     else:
 *         slice_copy(memview, mslice)
 *         return mslice             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_slice_copy')
 */
    __pyx_r = __pyx_v_mslice;
    goto __pyx_L0;
  }

  /* "View.MemoryView":1008
 * 
 * @cname('__pyx_memoryview_get_slice_from_memoryview')
 * cdef __Pyx_memviewslice *get_slice_from_memview(memoryview memview,             # <<<<<<<<<<<<<<
 *                                                    __Pyx_memviewslice *mslice):
 *     cdef _memoryviewslice obj
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_WriteUnraisable("View.MemoryView.get_slice_from_memview", __pyx_clineno, __pyx_lineno, __pyx_filename, 0, 0);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_obj);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":1019
 * 
 * @cname('__pyx_memoryview_slice_copy')
 * cdef void slice_copy(memoryview memview, __Pyx_memviewslice *dst):             # <<<<<<<<<<<<<<
 *     cdef int dim
 *     cdef (Py_ssize_t*) shape, strides, suboffsets
 */

static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_memview, __Pyx_memviewslice *__pyx_v_dst) {
  int __pyx_v_dim;
  Py_ssize_t *__pyx_v_shape;
  Py_ssize_t *__pyx_v_strides;
  Py_ssize_t *__pyx_v_suboffsets;
  __Pyx_RefNannyDeclarations
  Py_ssize_t *__pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  Py_ssize_t __pyx_t_4;
  __Pyx_RefNannySetupContext("slice_copy", 0);

  /* "View.MemoryView":1023
 *     cdef (Py_ssize_t*) shape, strides, suboffsets
 * 
 *     shape = memview.view.shape             # <<<<<<<<<<<<<<
 *     strides = memview.view.strides
 *     suboffsets = memview.view.suboffsets
 */
  __pyx_t_1 = __pyx_v_memview->view.shape;
  __pyx_v_shape = __pyx_t_1;

  /* "View.MemoryView":1024
 * 
 *     shape = memview.view.shape
 *     strides = memview.view.strides             # <<<<<<<<<<<<<<
 *     suboffsets = memview.view.suboffsets
 * 
 */
  __pyx_t_1 = __pyx_v_memview->view.strides;
  __pyx_v_strides = __pyx_t_1;

  /* "View.MemoryView":1025
 *     shape = memview.view.shape
 *     strides = memview.view.strides
 *     suboffsets = memview.view.suboffsets             # <<<<<<<<<<<<<<
 * 
 *     dst.memview = <__pyx_memoryview *> memview
 */
  __pyx_t_1 = __pyx_v_memview->view.suboffsets;
  __pyx_v_suboffsets = __pyx_t_1;

  /* "View.MemoryView":1027
 *     suboffsets = memview.view.suboffsets
 * 
 *     dst.memview = <__pyx_memoryview *> memview             # <<<<<<<<<<<<<<
 *     dst.data = <char *> memview.view.buf
 * 
 */
  __pyx_v_dst->memview = ((struct __pyx_memoryview_obj *)__pyx_v_memview);

  /* "View.MemoryView":1028
 * 
 *     dst.memview = <__pyx_memoryview *> memview
 *     dst.data = <char *> memview.view.buf             # <<<<<<<<<<<<<<
 * 
 *     for dim in range(memview.view.ndim):
 */
  __pyx_v_dst->data = ((char *)__pyx_v_memview->view.buf);

  /* "View.MemoryView":1030
 *     dst.data = <char *> memview.view.buf
 * 
 *     for dim in range(memview.view.ndim):             # <<<<<<<<<<<<<<
 *         dst.shape[dim] = shape[dim]
 *         dst.strides[dim] = strides[dim]
 */
  __pyx_t_2 = __pyx_v_memview->view.ndim;
  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
    __pyx_v_dim = __pyx_t_3;

    /* "View.MemoryView":1031
 * 
 *     for dim in range(memview.view.ndim):
 *         dst.shape[dim] = shape[dim]             # <<<<<<<<<<<<<<
 *         dst.strides[dim] = strides[dim]
 *         dst.suboffsets[dim] = suboffsets[dim] if suboffsets else -1
 */
    (__pyx_v_dst->shape[__pyx_v_dim]) = (__pyx_v_shape[__pyx_v_dim]);

    /* "View.MemoryView":1032
 *     for dim in range(memview.view.ndim):
 *         dst.shape[dim] = shape[dim]
 *         dst.strides[dim] = strides[dim]             # <<<<<<<<<<<<<<
 *         dst.suboffsets[dim] = suboffsets[dim] if suboffsets else -1
 * 
 */
    (__pyx_v_dst->strides[__pyx_v_dim]) = (__pyx_v_strides[__pyx_v_dim]);

    /* "View.MemoryView":1033
 *         dst.shape[dim] = shape[dim]
 *         dst.strides[dim] = strides[dim]
 *         dst.suboffsets[dim] = suboffsets[dim] if suboffsets else -1             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_copy_object')
 */
    if ((__pyx_v_suboffsets != 0)) {
      __pyx_t_4 = (__pyx_v_suboffsets[__pyx_v_dim]);
    } else {
      __pyx_t_4 = -1L;
    }
    (__pyx_v_dst->suboffsets[__pyx_v_dim]) = __pyx_t_4;
  }

  /* "View.MemoryView":1019
 * 
 * @cname('__pyx_memoryview_slice_copy')
 * cdef void slice_copy(memoryview memview, __Pyx_memviewslice *dst):             # <<<<<<<<<<<<<<
 *     cdef int dim
 *     cdef (Py_ssize_t*) shape, strides, suboffsets
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "View.MemoryView":1036
 * 
 * @cname('__pyx_memoryview_copy_object')
 * cdef memoryview_copy(memoryview memview):             # <<<<<<<<<<<<<<
 *     "Create a new memoryview object"
 *     cdef __Pyx_memviewslice memviewslice
 */

static PyObject *__pyx_memoryview_copy_object(struct __pyx_memoryview_obj *__pyx_v_memview) {
  __Pyx_memviewslice __pyx_v_memviewslice;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("memoryview_copy", 0);

  /* "View.MemoryView":1039
 *     "Create a new memoryview object"
 *     cdef __Pyx_memviewslice memviewslice
 *     slice_copy(memview, &memviewslice)             # <<<<<<<<<<<<<<
 *     return memoryview_copy_from_slice(memview, &memviewslice)
 * 
 */
  __pyx_memoryview_slice_copy(__pyx_v_memview, (&__pyx_v_memviewslice));

  /* "View.MemoryView":1040
 *     cdef __Pyx_memviewslice memviewslice
 *     slice_copy(memview, &memviewslice)
 *     return memoryview_copy_from_slice(memview, &memviewslice)             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_copy_object_from_slice')
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __pyx_memoryview_copy_object_from_slice(__pyx_v_memview, (&__pyx_v_memviewslice)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1040; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":1036
 * 
 * @cname('__pyx_memoryview_copy_object')
 * cdef memoryview_copy(memoryview memview):             # <<<<<<<<<<<<<<
 *     "Create a new memoryview object"
 *     cdef __Pyx_memviewslice memviewslice
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview_copy", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":1043
 * 
 * @cname('__pyx_memoryview_copy_object_from_slice')
 * cdef memoryview_copy_from_slice(memoryview memview, __Pyx_memviewslice *memviewslice):             # <<<<<<<<<<<<<<
 *     """
 *     Create a new memoryview object from a given memoryview object and slice.
 */

static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview_obj *__pyx_v_memview, __Pyx_memviewslice *__pyx_v_memviewslice) {
  PyObject *(*__pyx_v_to_object_func)(char *);
  int (*__pyx_v_to_dtype_func)(char *, PyObject *);
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *(*__pyx_t_3)(char *);
  int (*__pyx_t_4)(char *, PyObject *);
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("memoryview_copy_from_slice", 0);

  /* "View.MemoryView":1050
 *     cdef int (*to_dtype_func)(char *, object) except 0
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         to_object_func = (<_memoryviewslice> memview).to_object_func
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func
 */
  __pyx_t_1 = __Pyx_TypeCheck(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type); 
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1051
 * 
 *     if isinstance(memview, _memoryviewslice):
 *         to_object_func = (<_memoryviewslice> memview).to_object_func             # <<<<<<<<<<<<<<
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func
 *     else:
 */
    __pyx_t_3 = ((struct __pyx_memoryviewslice_obj *)__pyx_v_memview)->to_object_func;
    __pyx_v_to_object_func = __pyx_t_3;

    /* "View.MemoryView":1052
 *     if isinstance(memview, _memoryviewslice):
 *         to_object_func = (<_memoryviewslice> memview).to_object_func
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func             # <<<<<<<<<<<<<<
 *     else:
 *         to_object_func = NULL
 */
    __pyx_t_4 = ((struct __pyx_memoryviewslice_obj *)__pyx_v_memview)->to_dtype_func;
    __pyx_v_to_dtype_func = __pyx_t_4;

    /* "View.MemoryView":1050
 *     cdef int (*to_dtype_func)(char *, object) except 0
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         to_object_func = (<_memoryviewslice> memview).to_object_func
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":1054
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func
 *     else:
 *         to_object_func = NULL             # <<<<<<<<<<<<<<
 *         to_dtype_func = NULL
 * 
 */
  /*else*/ {
    __pyx_v_to_object_func = NULL;

    /* "View.MemoryView":1055
 *     else:
 *         to_object_func = NULL
 *         to_dtype_func = NULL             # <<<<<<<<<<<<<<
 * 
 *     return memoryview_fromslice(memviewslice[0], memview.view.ndim,
 */
    __pyx_v_to_dtype_func = NULL;
  }
  __pyx_L3:;

  /* "View.MemoryView":1057
 *         to_dtype_func = NULL
 * 
 *     return memoryview_fromslice(memviewslice[0], memview.view.ndim,             # <<<<<<<<<<<<<<
 *                                 to_object_func, to_dtype_func,
 *                                 memview.dtype_is_object)
 */
  __Pyx_XDECREF(__pyx_r);

  /* "View.MemoryView":1059
 *     return memoryview_fromslice(memviewslice[0], memview.view.ndim,
 *                                 to_object_func, to_dtype_func,
 *                                 memview.dtype_is_object)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_5 = __pyx_memoryview_fromslice((__pyx_v_memviewslice[0]), __pyx_v_memview->view.ndim, __pyx_v_to_object_func, __pyx_v_to_dtype_func, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1057; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_r = __pyx_t_5;
  __pyx_t_5 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":1043
 * 
 * @cname('__pyx_memoryview_copy_object_from_slice')
 * cdef memoryview_copy_from_slice(memoryview memview, __Pyx_memviewslice *memviewslice):             # <<<<<<<<<<<<<<
 *     """
 *     Create a new memoryview object from a given memoryview object and slice.
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.memoryview_copy_from_slice", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":1065
 * 
 * 
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:             # <<<<<<<<<<<<<<
 *     if arg < 0:
 *         return -arg
 */

static Py_ssize_t abs_py_ssize_t(Py_ssize_t __pyx_v_arg) {
  Py_ssize_t __pyx_r;
  int __pyx_t_1;

  /* "View.MemoryView":1066
 * 
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:
 *     if arg < 0:             # <<<<<<<<<<<<<<
 *         return -arg
 *     else:
 */
  __pyx_t_1 = ((__pyx_v_arg < 0) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1067
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:
 *     if arg < 0:
 *         return -arg             # <<<<<<<<<<<<<<
 *     else:
 *         return arg
 */
    __pyx_r = (-__pyx_v_arg);
    goto __pyx_L0;

    /* "View.MemoryView":1066
 * 
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:
 *     if arg < 0:             # <<<<<<<<<<<<<<
 *         return -arg
 *     else:
 */
  }

  /* "View.MemoryView":1069
 *         return -arg
 *     else:
 *         return arg             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_get_best_slice_order')
 */
  /*else*/ {
    __pyx_r = __pyx_v_arg;
    goto __pyx_L0;
  }

  /* "View.MemoryView":1065
 * 
 * 
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:             # <<<<<<<<<<<<<<
 *     if arg < 0:
 *         return -arg
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1072
 * 
 * @cname('__pyx_get_best_slice_order')
 * cdef char get_best_order(__Pyx_memviewslice *mslice, int ndim) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     Figure out the best memory access order for a given slice.
 */

static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int __pyx_v_ndim) {
  int __pyx_v_i;
  Py_ssize_t __pyx_v_c_stride;
  Py_ssize_t __pyx_v_f_stride;
  char __pyx_r;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;

  /* "View.MemoryView":1077
 *     """
 *     cdef int i
 *     cdef Py_ssize_t c_stride = 0             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t f_stride = 0
 * 
 */
  __pyx_v_c_stride = 0;

  /* "View.MemoryView":1078
 *     cdef int i
 *     cdef Py_ssize_t c_stride = 0
 *     cdef Py_ssize_t f_stride = 0             # <<<<<<<<<<<<<<
 * 
 *     for i in range(ndim - 1, -1, -1):
 */
  __pyx_v_f_stride = 0;

  /* "View.MemoryView":1080
 *     cdef Py_ssize_t f_stride = 0
 * 
 *     for i in range(ndim - 1, -1, -1):             # <<<<<<<<<<<<<<
 *         if mslice.shape[i] > 1:
 *             c_stride = mslice.strides[i]
 */
  for (__pyx_t_1 = (__pyx_v_ndim - 1); __pyx_t_1 > -1L; __pyx_t_1-=1) {
    __pyx_v_i = __pyx_t_1;

    /* "View.MemoryView":1081
 * 
 *     for i in range(ndim - 1, -1, -1):
 *         if mslice.shape[i] > 1:             # <<<<<<<<<<<<<<
 *             c_stride = mslice.strides[i]
 *             break
 */
    __pyx_t_2 = (((__pyx_v_mslice->shape[__pyx_v_i]) > 1) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1082
 *     for i in range(ndim - 1, -1, -1):
 *         if mslice.shape[i] > 1:
 *             c_stride = mslice.strides[i]             # <<<<<<<<<<<<<<
 *             break
 * 
 */
      __pyx_v_c_stride = (__pyx_v_mslice->strides[__pyx_v_i]);

      /* "View.MemoryView":1083
 *         if mslice.shape[i] > 1:
 *             c_stride = mslice.strides[i]
 *             break             # <<<<<<<<<<<<<<
 * 
 *     for i in range(ndim):
 */
      goto __pyx_L4_break;

      /* "View.MemoryView":1081
 * 
 *     for i in range(ndim - 1, -1, -1):
 *         if mslice.shape[i] > 1:             # <<<<<<<<<<<<<<
 *             c_stride = mslice.strides[i]
 *             break
 */
    }
  }
  __pyx_L4_break:;

  /* "View.MemoryView":1085
 *             break
 * 
 *     for i in range(ndim):             # <<<<<<<<<<<<<<
 *         if mslice.shape[i] > 1:
 *             f_stride = mslice.strides[i]
 */
  __pyx_t_1 = __pyx_v_ndim;
  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_1; __pyx_t_3+=1) {
    __pyx_v_i = __pyx_t_3;

    /* "View.MemoryView":1086
 * 
 *     for i in range(ndim):
 *         if mslice.shape[i] > 1:             # <<<<<<<<<<<<<<
 *             f_stride = mslice.strides[i]
 *             break
 */
    __pyx_t_2 = (((__pyx_v_mslice->shape[__pyx_v_i]) > 1) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1087
 *     for i in range(ndim):
 *         if mslice.shape[i] > 1:
 *             f_stride = mslice.strides[i]             # <<<<<<<<<<<<<<
 *             break
 * 
 */
      __pyx_v_f_stride = (__pyx_v_mslice->strides[__pyx_v_i]);

      /* "View.MemoryView":1088
 *         if mslice.shape[i] > 1:
 *             f_stride = mslice.strides[i]
 *             break             # <<<<<<<<<<<<<<
 * 
 *     if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride):
 */
      goto __pyx_L7_break;

      /* "View.MemoryView":1086
 * 
 *     for i in range(ndim):
 *         if mslice.shape[i] > 1:             # <<<<<<<<<<<<<<
 *             f_stride = mslice.strides[i]
 *             break
 */
    }
  }
  __pyx_L7_break:;

  /* "View.MemoryView":1090
 *             break
 * 
 *     if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride):             # <<<<<<<<<<<<<<
 *         return 'C'
 *     else:
 */
  __pyx_t_2 = ((abs_py_ssize_t(__pyx_v_c_stride) <= abs_py_ssize_t(__pyx_v_f_stride)) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1091
 * 
 *     if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride):
 *         return 'C'             # <<<<<<<<<<<<<<
 *     else:
 *         return 'F'
 */
    __pyx_r = 'C';
    goto __pyx_L0;

    /* "View.MemoryView":1090
 *             break
 * 
 *     if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride):             # <<<<<<<<<<<<<<
 *         return 'C'
 *     else:
 */
  }

  /* "View.MemoryView":1093
 *         return 'C'
 *     else:
 *         return 'F'             # <<<<<<<<<<<<<<
 * 
 * @cython.cdivision(True)
 */
  /*else*/ {
    __pyx_r = 'F';
    goto __pyx_L0;
  }

  /* "View.MemoryView":1072
 * 
 * @cname('__pyx_get_best_slice_order')
 * cdef char get_best_order(__Pyx_memviewslice *mslice, int ndim) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     Figure out the best memory access order for a given slice.
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1096
 * 
 * @cython.cdivision(True)
 * cdef void _copy_strided_to_strided(char *src_data, Py_ssize_t *src_strides,             # <<<<<<<<<<<<<<
 *                                    char *dst_data, Py_ssize_t *dst_strides,
 *                                    Py_ssize_t *src_shape, Py_ssize_t *dst_shape,
 */

static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v_src_strides, char *__pyx_v_dst_data, Py_ssize_t *__pyx_v_dst_strides, Py_ssize_t *__pyx_v_src_shape, Py_ssize_t *__pyx_v_dst_shape, int __pyx_v_ndim, size_t __pyx_v_itemsize) {
  CYTHON_UNUSED Py_ssize_t __pyx_v_i;
  CYTHON_UNUSED Py_ssize_t __pyx_v_src_extent;
  Py_ssize_t __pyx_v_dst_extent;
  Py_ssize_t __pyx_v_src_stride;
  Py_ssize_t __pyx_v_dst_stride;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  Py_ssize_t __pyx_t_4;
  Py_ssize_t __pyx_t_5;

  /* "View.MemoryView":1103
 * 
 *     cdef Py_ssize_t i
 *     cdef Py_ssize_t src_extent = src_shape[0]             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t dst_extent = dst_shape[0]
 *     cdef Py_ssize_t src_stride = src_strides[0]
 */
  __pyx_v_src_extent = (__pyx_v_src_shape[0]);

  /* "View.MemoryView":1104
 *     cdef Py_ssize_t i
 *     cdef Py_ssize_t src_extent = src_shape[0]
 *     cdef Py_ssize_t dst_extent = dst_shape[0]             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t src_stride = src_strides[0]
 *     cdef Py_ssize_t dst_stride = dst_strides[0]
 */
  __pyx_v_dst_extent = (__pyx_v_dst_shape[0]);

  /* "View.MemoryView":1105
 *     cdef Py_ssize_t src_extent = src_shape[0]
 *     cdef Py_ssize_t dst_extent = dst_shape[0]
 *     cdef Py_ssize_t src_stride = src_strides[0]             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t dst_stride = dst_strides[0]
 * 
 */
  __pyx_v_src_stride = (__pyx_v_src_strides[0]);

  /* "View.MemoryView":1106
 *     cdef Py_ssize_t dst_extent = dst_shape[0]
 *     cdef Py_ssize_t src_stride = src_strides[0]
 *     cdef Py_ssize_t dst_stride = dst_strides[0]             # <<<<<<<<<<<<<<
 * 
 *     if ndim == 1:
 */
  __pyx_v_dst_stride = (__pyx_v_dst_strides[0]);

  /* "View.MemoryView":1108
 *     cdef Py_ssize_t dst_stride = dst_strides[0]
 * 
 *     if ndim == 1:             # <<<<<<<<<<<<<<
 *        if (src_stride > 0 and dst_stride > 0 and
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 */
  __pyx_t_1 = ((__pyx_v_ndim == 1) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1109
 * 
 *     if ndim == 1:
 *        if (src_stride > 0 and dst_stride > 0 and             # <<<<<<<<<<<<<<
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 */
    __pyx_t_2 = ((__pyx_v_src_stride > 0) != 0);
    if (__pyx_t_2) {
    } else {
      __pyx_t_1 = __pyx_t_2;
      goto __pyx_L5_bool_binop_done;
    }
    __pyx_t_2 = ((__pyx_v_dst_stride > 0) != 0);
    if (__pyx_t_2) {
    } else {
      __pyx_t_1 = __pyx_t_2;
      goto __pyx_L5_bool_binop_done;
    }

    /* "View.MemoryView":1110
 *     if ndim == 1:
 *        if (src_stride > 0 and dst_stride > 0 and
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):             # <<<<<<<<<<<<<<
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 *        else:
 */
    __pyx_t_2 = (((size_t)__pyx_v_src_stride) == __pyx_v_itemsize);
    if (__pyx_t_2) {
      __pyx_t_2 = (__pyx_v_itemsize == ((size_t)__pyx_v_dst_stride));
    }
    __pyx_t_3 = (__pyx_t_2 != 0);
    __pyx_t_1 = __pyx_t_3;
    __pyx_L5_bool_binop_done:;

    /* "View.MemoryView":1109
 * 
 *     if ndim == 1:
 *        if (src_stride > 0 and dst_stride > 0 and             # <<<<<<<<<<<<<<
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 */
    if (__pyx_t_1) {

      /* "View.MemoryView":1111
 *        if (src_stride > 0 and dst_stride > 0 and
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 *            memcpy(dst_data, src_data, itemsize * dst_extent)             # <<<<<<<<<<<<<<
 *        else:
 *            for i in range(dst_extent):
 */
      memcpy(__pyx_v_dst_data, __pyx_v_src_data, (__pyx_v_itemsize * __pyx_v_dst_extent));

      /* "View.MemoryView":1109
 * 
 *     if ndim == 1:
 *        if (src_stride > 0 and dst_stride > 0 and             # <<<<<<<<<<<<<<
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 */
      goto __pyx_L4;
    }

    /* "View.MemoryView":1113
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 *        else:
 *            for i in range(dst_extent):             # <<<<<<<<<<<<<<
 *                memcpy(dst_data, src_data, itemsize)
 *                src_data += src_stride
 */
    /*else*/ {
      __pyx_t_4 = __pyx_v_dst_extent;
      for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
        __pyx_v_i = __pyx_t_5;

        /* "View.MemoryView":1114
 *        else:
 *            for i in range(dst_extent):
 *                memcpy(dst_data, src_data, itemsize)             # <<<<<<<<<<<<<<
 *                src_data += src_stride
 *                dst_data += dst_stride
 */
        memcpy(__pyx_v_dst_data, __pyx_v_src_data, __pyx_v_itemsize);

        /* "View.MemoryView":1115
 *            for i in range(dst_extent):
 *                memcpy(dst_data, src_data, itemsize)
 *                src_data += src_stride             # <<<<<<<<<<<<<<
 *                dst_data += dst_stride
 *     else:
 */
        __pyx_v_src_data = (__pyx_v_src_data + __pyx_v_src_stride);

        /* "View.MemoryView":1116
 *                memcpy(dst_data, src_data, itemsize)
 *                src_data += src_stride
 *                dst_data += dst_stride             # <<<<<<<<<<<<<<
 *     else:
 *         for i in range(dst_extent):
 */
        __pyx_v_dst_data = (__pyx_v_dst_data + __pyx_v_dst_stride);
      }
    }
    __pyx_L4:;

    /* "View.MemoryView":1108
 *     cdef Py_ssize_t dst_stride = dst_strides[0]
 * 
 *     if ndim == 1:             # <<<<<<<<<<<<<<
 *        if (src_stride > 0 and dst_stride > 0 and
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":1118
 *                dst_data += dst_stride
 *     else:
 *         for i in range(dst_extent):             # <<<<<<<<<<<<<<
 *             _copy_strided_to_strided(src_data, src_strides + 1,
 *                                      dst_data, dst_strides + 1,
 */
  /*else*/ {
    __pyx_t_4 = __pyx_v_dst_extent;
    for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
      __pyx_v_i = __pyx_t_5;

      /* "View.MemoryView":1119
 *     else:
 *         for i in range(dst_extent):
 *             _copy_strided_to_strided(src_data, src_strides + 1,             # <<<<<<<<<<<<<<
 *                                      dst_data, dst_strides + 1,
 *                                      src_shape + 1, dst_shape + 1,
 */
      _copy_strided_to_strided(__pyx_v_src_data, (__pyx_v_src_strides + 1), __pyx_v_dst_data, (__pyx_v_dst_strides + 1), (__pyx_v_src_shape + 1), (__pyx_v_dst_shape + 1), (__pyx_v_ndim - 1), __pyx_v_itemsize);

      /* "View.MemoryView":1123
 *                                      src_shape + 1, dst_shape + 1,
 *                                      ndim - 1, itemsize)
 *             src_data += src_stride             # <<<<<<<<<<<<<<
 *             dst_data += dst_stride
 * 
 */
      __pyx_v_src_data = (__pyx_v_src_data + __pyx_v_src_stride);

      /* "View.MemoryView":1124
 *                                      ndim - 1, itemsize)
 *             src_data += src_stride
 *             dst_data += dst_stride             # <<<<<<<<<<<<<<
 * 
 * cdef void copy_strided_to_strided(__Pyx_memviewslice *src,
 */
      __pyx_v_dst_data = (__pyx_v_dst_data + __pyx_v_dst_stride);
    }
  }
  __pyx_L3:;

  /* "View.MemoryView":1096
 * 
 * @cython.cdivision(True)
 * cdef void _copy_strided_to_strided(char *src_data, Py_ssize_t *src_strides,             # <<<<<<<<<<<<<<
 *                                    char *dst_data, Py_ssize_t *dst_strides,
 *                                    Py_ssize_t *src_shape, Py_ssize_t *dst_shape,
 */

  /* function exit code */
}

/* "View.MemoryView":1126
 *             dst_data += dst_stride
 * 
 * cdef void copy_strided_to_strided(__Pyx_memviewslice *src,             # <<<<<<<<<<<<<<
 *                                   __Pyx_memviewslice *dst,
 *                                   int ndim, size_t itemsize) nogil:
 */

static void copy_strided_to_strided(__Pyx_memviewslice *__pyx_v_src, __Pyx_memviewslice *__pyx_v_dst, int __pyx_v_ndim, size_t __pyx_v_itemsize) {

  /* "View.MemoryView":1129
 *                                   __Pyx_memviewslice *dst,
 *                                   int ndim, size_t itemsize) nogil:
 *     _copy_strided_to_strided(src.data, src.strides, dst.data, dst.strides,             # <<<<<<<<<<<<<<
 *                              src.shape, dst.shape, ndim, itemsize)
 * 
 */
  _copy_strided_to_strided(__pyx_v_src->data, __pyx_v_src->strides, __pyx_v_dst->data, __pyx_v_dst->strides, __pyx_v_src->shape, __pyx_v_dst->shape, __pyx_v_ndim, __pyx_v_itemsize);

  /* "View.MemoryView":1126
 *             dst_data += dst_stride
 * 
 * cdef void copy_strided_to_strided(__Pyx_memviewslice *src,             # <<<<<<<<<<<<<<
 *                                   __Pyx_memviewslice *dst,
 *                                   int ndim, size_t itemsize) nogil:
 */

  /* function exit code */
}

/* "View.MemoryView":1133
 * 
 * @cname('__pyx_memoryview_slice_get_size')
 * cdef Py_ssize_t slice_get_size(__Pyx_memviewslice *src, int ndim) nogil:             # <<<<<<<<<<<<<<
 *     "Return the size of the memory occupied by the slice in number of bytes"
 *     cdef int i
 */

static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *__pyx_v_src, int __pyx_v_ndim) {
  int __pyx_v_i;
  Py_ssize_t __pyx_v_size;
  Py_ssize_t __pyx_r;
  Py_ssize_t __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;

  /* "View.MemoryView":1136
 *     "Return the size of the memory occupied by the slice in number of bytes"
 *     cdef int i
 *     cdef Py_ssize_t size = src.memview.view.itemsize             # <<<<<<<<<<<<<<
 * 
 *     for i in range(ndim):
 */
  __pyx_t_1 = __pyx_v_src->memview->view.itemsize;
  __pyx_v_size = __pyx_t_1;

  /* "View.MemoryView":1138
 *     cdef Py_ssize_t size = src.memview.view.itemsize
 * 
 *     for i in range(ndim):             # <<<<<<<<<<<<<<
 *         size *= src.shape[i]
 * 
 */
  __pyx_t_2 = __pyx_v_ndim;
  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
    __pyx_v_i = __pyx_t_3;

    /* "View.MemoryView":1139
 * 
 *     for i in range(ndim):
 *         size *= src.shape[i]             # <<<<<<<<<<<<<<
 * 
 *     return size
 */
    __pyx_v_size = (__pyx_v_size * (__pyx_v_src->shape[__pyx_v_i]));
  }

  /* "View.MemoryView":1141
 *         size *= src.shape[i]
 * 
 *     return size             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_fill_contig_strides_array')
 */
  __pyx_r = __pyx_v_size;
  goto __pyx_L0;

  /* "View.MemoryView":1133
 * 
 * @cname('__pyx_memoryview_slice_get_size')
 * cdef Py_ssize_t slice_get_size(__Pyx_memviewslice *src, int ndim) nogil:             # <<<<<<<<<<<<<<
 *     "Return the size of the memory occupied by the slice in number of bytes"
 *     cdef int i
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1144
 * 
 * @cname('__pyx_fill_contig_strides_array')
 * cdef Py_ssize_t fill_contig_strides_array(             # <<<<<<<<<<<<<<
 *                 Py_ssize_t *shape, Py_ssize_t *strides, Py_ssize_t stride,
 *                 int ndim, char order) nogil:
 */

static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ssize_t *__pyx_v_strides, Py_ssize_t __pyx_v_stride, int __pyx_v_ndim, char __pyx_v_order) {
  int __pyx_v_idx;
  Py_ssize_t __pyx_r;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;

  /* "View.MemoryView":1153
 *     cdef int idx
 * 
 *     if order == 'F':             # <<<<<<<<<<<<<<
 *         for idx in range(ndim):
 *             strides[idx] = stride
 */
  __pyx_t_1 = ((__pyx_v_order == 'F') != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1154
 * 
 *     if order == 'F':
 *         for idx in range(ndim):             # <<<<<<<<<<<<<<
 *             strides[idx] = stride
 *             stride = stride * shape[idx]
 */
    __pyx_t_2 = __pyx_v_ndim;
    for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
      __pyx_v_idx = __pyx_t_3;

      /* "View.MemoryView":1155
 *     if order == 'F':
 *         for idx in range(ndim):
 *             strides[idx] = stride             # <<<<<<<<<<<<<<
 *             stride = stride * shape[idx]
 *     else:
 */
      (__pyx_v_strides[__pyx_v_idx]) = __pyx_v_stride;

      /* "View.MemoryView":1156
 *         for idx in range(ndim):
 *             strides[idx] = stride
 *             stride = stride * shape[idx]             # <<<<<<<<<<<<<<
 *     else:
 *         for idx in range(ndim - 1, -1, -1):
 */
      __pyx_v_stride = (__pyx_v_stride * (__pyx_v_shape[__pyx_v_idx]));
    }

    /* "View.MemoryView":1153
 *     cdef int idx
 * 
 *     if order == 'F':             # <<<<<<<<<<<<<<
 *         for idx in range(ndim):
 *             strides[idx] = stride
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":1158
 *             stride = stride * shape[idx]
 *     else:
 *         for idx in range(ndim - 1, -1, -1):             # <<<<<<<<<<<<<<
 *             strides[idx] = stride
 *             stride = stride * shape[idx]
 */
  /*else*/ {
    for (__pyx_t_2 = (__pyx_v_ndim - 1); __pyx_t_2 > -1L; __pyx_t_2-=1) {
      __pyx_v_idx = __pyx_t_2;

      /* "View.MemoryView":1159
 *     else:
 *         for idx in range(ndim - 1, -1, -1):
 *             strides[idx] = stride             # <<<<<<<<<<<<<<
 *             stride = stride * shape[idx]
 * 
 */
      (__pyx_v_strides[__pyx_v_idx]) = __pyx_v_stride;

      /* "View.MemoryView":1160
 *         for idx in range(ndim - 1, -1, -1):
 *             strides[idx] = stride
 *             stride = stride * shape[idx]             # <<<<<<<<<<<<<<
 * 
 *     return stride
 */
      __pyx_v_stride = (__pyx_v_stride * (__pyx_v_shape[__pyx_v_idx]));
    }
  }
  __pyx_L3:;

  /* "View.MemoryView":1162
 *             stride = stride * shape[idx]
 * 
 *     return stride             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_copy_data_to_temp')
 */
  __pyx_r = __pyx_v_stride;
  goto __pyx_L0;

  /* "View.MemoryView":1144
 * 
 * @cname('__pyx_fill_contig_strides_array')
 * cdef Py_ssize_t fill_contig_strides_array(             # <<<<<<<<<<<<<<
 *                 Py_ssize_t *shape, Py_ssize_t *strides, Py_ssize_t stride,
 *                 int ndim, char order) nogil:
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1165
 * 
 * @cname('__pyx_memoryview_copy_data_to_temp')
 * cdef void *copy_data_to_temp(__Pyx_memviewslice *src,             # <<<<<<<<<<<<<<
 *                              __Pyx_memviewslice *tmpslice,
 *                              char order,
 */

static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, __Pyx_memviewslice *__pyx_v_tmpslice, char __pyx_v_order, int __pyx_v_ndim) {
  int __pyx_v_i;
  void *__pyx_v_result;
  size_t __pyx_v_itemsize;
  size_t __pyx_v_size;
  void *__pyx_r;
  Py_ssize_t __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  struct __pyx_memoryview_obj *__pyx_t_4;
  int __pyx_t_5;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;

  /* "View.MemoryView":1176
 *     cdef void *result
 * 
 *     cdef size_t itemsize = src.memview.view.itemsize             # <<<<<<<<<<<<<<
 *     cdef size_t size = slice_get_size(src, ndim)
 * 
 */
  __pyx_t_1 = __pyx_v_src->memview->view.itemsize;
  __pyx_v_itemsize = __pyx_t_1;

  /* "View.MemoryView":1177
 * 
 *     cdef size_t itemsize = src.memview.view.itemsize
 *     cdef size_t size = slice_get_size(src, ndim)             # <<<<<<<<<<<<<<
 * 
 *     result = malloc(size)
 */
  __pyx_v_size = __pyx_memoryview_slice_get_size(__pyx_v_src, __pyx_v_ndim);

  /* "View.MemoryView":1179
 *     cdef size_t size = slice_get_size(src, ndim)
 * 
 *     result = malloc(size)             # <<<<<<<<<<<<<<
 *     if not result:
 *         _err(MemoryError, NULL)
 */
  __pyx_v_result = malloc(__pyx_v_size);

  /* "View.MemoryView":1180
 * 
 *     result = malloc(size)
 *     if not result:             # <<<<<<<<<<<<<<
 *         _err(MemoryError, NULL)
 * 
 */
  __pyx_t_2 = ((!(__pyx_v_result != 0)) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1181
 *     result = malloc(size)
 *     if not result:
 *         _err(MemoryError, NULL)             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __pyx_t_3 = __pyx_memoryview_err(__pyx_builtin_MemoryError, NULL); if (unlikely(__pyx_t_3 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1181; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":1180
 * 
 *     result = malloc(size)
 *     if not result:             # <<<<<<<<<<<<<<
 *         _err(MemoryError, NULL)
 * 
 */
  }

  /* "View.MemoryView":1184
 * 
 * 
 *     tmpslice.data = <char *> result             # <<<<<<<<<<<<<<
 *     tmpslice.memview = src.memview
 *     for i in range(ndim):
 */
  __pyx_v_tmpslice->data = ((char *)__pyx_v_result);

  /* "View.MemoryView":1185
 * 
 *     tmpslice.data = <char *> result
 *     tmpslice.memview = src.memview             # <<<<<<<<<<<<<<
 *     for i in range(ndim):
 *         tmpslice.shape[i] = src.shape[i]
 */
  __pyx_t_4 = __pyx_v_src->memview;
  __pyx_v_tmpslice->memview = __pyx_t_4;

  /* "View.MemoryView":1186
 *     tmpslice.data = <char *> result
 *     tmpslice.memview = src.memview
 *     for i in range(ndim):             # <<<<<<<<<<<<<<
 *         tmpslice.shape[i] = src.shape[i]
 *         tmpslice.suboffsets[i] = -1
 */
  __pyx_t_3 = __pyx_v_ndim;
  for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_3; __pyx_t_5+=1) {
    __pyx_v_i = __pyx_t_5;

    /* "View.MemoryView":1187
 *     tmpslice.memview = src.memview
 *     for i in range(ndim):
 *         tmpslice.shape[i] = src.shape[i]             # <<<<<<<<<<<<<<
 *         tmpslice.suboffsets[i] = -1
 * 
 */
    (__pyx_v_tmpslice->shape[__pyx_v_i]) = (__pyx_v_src->shape[__pyx_v_i]);

    /* "View.MemoryView":1188
 *     for i in range(ndim):
 *         tmpslice.shape[i] = src.shape[i]
 *         tmpslice.suboffsets[i] = -1             # <<<<<<<<<<<<<<
 * 
 *     fill_contig_strides_array(&tmpslice.shape[0], &tmpslice.strides[0], itemsize,
 */
    (__pyx_v_tmpslice->suboffsets[__pyx_v_i]) = -1L;
  }

  /* "View.MemoryView":1190
 *         tmpslice.suboffsets[i] = -1
 * 
 *     fill_contig_strides_array(&tmpslice.shape[0], &tmpslice.strides[0], itemsize,             # <<<<<<<<<<<<<<
 *                               ndim, order)
 * 
 */
  __pyx_fill_contig_strides_array((&(__pyx_v_tmpslice->shape[0])), (&(__pyx_v_tmpslice->strides[0])), __pyx_v_itemsize, __pyx_v_ndim, __pyx_v_order);

  /* "View.MemoryView":1194
 * 
 * 
 *     for i in range(ndim):             # <<<<<<<<<<<<<<
 *         if tmpslice.shape[i] == 1:
 *             tmpslice.strides[i] = 0
 */
  __pyx_t_3 = __pyx_v_ndim;
  for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_3; __pyx_t_5+=1) {
    __pyx_v_i = __pyx_t_5;

    /* "View.MemoryView":1195
 * 
 *     for i in range(ndim):
 *         if tmpslice.shape[i] == 1:             # <<<<<<<<<<<<<<
 *             tmpslice.strides[i] = 0
 * 
 */
    __pyx_t_2 = (((__pyx_v_tmpslice->shape[__pyx_v_i]) == 1) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1196
 *     for i in range(ndim):
 *         if tmpslice.shape[i] == 1:
 *             tmpslice.strides[i] = 0             # <<<<<<<<<<<<<<
 * 
 *     if slice_is_contig(src, order, ndim):
 */
      (__pyx_v_tmpslice->strides[__pyx_v_i]) = 0;

      /* "View.MemoryView":1195
 * 
 *     for i in range(ndim):
 *         if tmpslice.shape[i] == 1:             # <<<<<<<<<<<<<<
 *             tmpslice.strides[i] = 0
 * 
 */
    }
  }

  /* "View.MemoryView":1198
 *             tmpslice.strides[i] = 0
 * 
 *     if slice_is_contig(src, order, ndim):             # <<<<<<<<<<<<<<
 *         memcpy(result, src.data, size)
 *     else:
 */
  __pyx_t_2 = (__pyx_memviewslice_is_contig(__pyx_v_src, __pyx_v_order, __pyx_v_ndim) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1199
 * 
 *     if slice_is_contig(src, order, ndim):
 *         memcpy(result, src.data, size)             # <<<<<<<<<<<<<<
 *     else:
 *         copy_strided_to_strided(src, tmpslice, ndim, itemsize)
 */
    memcpy(__pyx_v_result, __pyx_v_src->data, __pyx_v_size);

    /* "View.MemoryView":1198
 *             tmpslice.strides[i] = 0
 * 
 *     if slice_is_contig(src, order, ndim):             # <<<<<<<<<<<<<<
 *         memcpy(result, src.data, size)
 *     else:
 */
    goto __pyx_L9;
  }

  /* "View.MemoryView":1201
 *         memcpy(result, src.data, size)
 *     else:
 *         copy_strided_to_strided(src, tmpslice, ndim, itemsize)             # <<<<<<<<<<<<<<
 * 
 *     return result
 */
  /*else*/ {
    copy_strided_to_strided(__pyx_v_src, __pyx_v_tmpslice, __pyx_v_ndim, __pyx_v_itemsize);
  }
  __pyx_L9:;

  /* "View.MemoryView":1203
 *         copy_strided_to_strided(src, tmpslice, ndim, itemsize)
 * 
 *     return result             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = __pyx_v_result;
  goto __pyx_L0;

  /* "View.MemoryView":1165
 * 
 * @cname('__pyx_memoryview_copy_data_to_temp')
 * cdef void *copy_data_to_temp(__Pyx_memviewslice *src,             # <<<<<<<<<<<<<<
 *                              __Pyx_memviewslice *tmpslice,
 *                              char order,
 */

  /* function exit code */
  __pyx_L1_error:;
  {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();
    #endif
    __Pyx_AddTraceback("View.MemoryView.copy_data_to_temp", __pyx_clineno, __pyx_lineno, __pyx_filename);
    #ifdef WITH_THREAD
    PyGILState_Release(__pyx_gilstate_save);
    #endif
  }
  __pyx_r = NULL;
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1208
 * 
 * @cname('__pyx_memoryview_err_extents')
 * cdef int _err_extents(int i, Py_ssize_t extent1,             # <<<<<<<<<<<<<<
 *                              Py_ssize_t extent2) except -1 with gil:
 *     raise ValueError("got differing extents in dimension %d (got %d and %d)" %
 */

static int __pyx_memoryview_err_extents(int __pyx_v_i, Py_ssize_t __pyx_v_extent1, Py_ssize_t __pyx_v_extent2) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  #ifdef WITH_THREAD
  PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();
  #endif
  __Pyx_RefNannySetupContext("_err_extents", 0);

  /* "View.MemoryView":1211
 *                              Py_ssize_t extent2) except -1 with gil:
 *     raise ValueError("got differing extents in dimension %d (got %d and %d)" %
 *                                                         (i, extent1, extent2))             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_err_dim')
 */
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_i); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1211; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_extent1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1211; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = PyInt_FromSsize_t(__pyx_v_extent2); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1211; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1211; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_3);
  PyTuple_SET_ITEM(__pyx_t_4, 2, __pyx_t_3);
  __pyx_t_1 = 0;
  __pyx_t_2 = 0;
  __pyx_t_3 = 0;

  /* "View.MemoryView":1210
 * cdef int _err_extents(int i, Py_ssize_t extent1,
 *                              Py_ssize_t extent2) except -1 with gil:
 *     raise ValueError("got differing extents in dimension %d (got %d and %d)" %             # <<<<<<<<<<<<<<
 *                                                         (i, extent1, extent2))
 * 
 */
  __pyx_t_3 = __Pyx_PyString_Format(__pyx_kp_s_got_differing_extents_in_dimensi, __pyx_t_4); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1210; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_t_4 = PyTuple_New(1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1210; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_GIVEREF(__pyx_t_3);
  PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_3);
  __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_t_4, NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1210; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __Pyx_Raise(__pyx_t_3, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1210; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  /* "View.MemoryView":1208
 * 
 * @cname('__pyx_memoryview_err_extents')
 * cdef int _err_extents(int i, Py_ssize_t extent1,             # <<<<<<<<<<<<<<
 *                              Py_ssize_t extent2) except -1 with gil:
 *     raise ValueError("got differing extents in dimension %d (got %d and %d)" %
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_AddTraceback("View.MemoryView._err_extents", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __Pyx_RefNannyFinishContext();
  #ifdef WITH_THREAD
  PyGILState_Release(__pyx_gilstate_save);
  #endif
  return __pyx_r;
}

/* "View.MemoryView":1214
 * 
 * @cname('__pyx_memoryview_err_dim')
 * cdef int _err_dim(object error, char *msg, int dim) except -1 with gil:             # <<<<<<<<<<<<<<
 *     raise error(msg.decode('ascii') % dim)
 * 
 */

static int __pyx_memoryview_err_dim(PyObject *__pyx_v_error, char *__pyx_v_msg, int __pyx_v_dim) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  #ifdef WITH_THREAD
  PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();
  #endif
  __Pyx_RefNannySetupContext("_err_dim", 0);
  __Pyx_INCREF(__pyx_v_error);

  /* "View.MemoryView":1215
 * @cname('__pyx_memoryview_err_dim')
 * cdef int _err_dim(object error, char *msg, int dim) except -1 with gil:
 *     raise error(msg.decode('ascii') % dim)             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_err')
 */
  __pyx_t_2 = __Pyx_decode_c_string(__pyx_v_msg, 0, strlen(__pyx_v_msg), NULL, NULL, PyUnicode_DecodeASCII); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1215; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_dim); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1215; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_4 = PyUnicode_Format(__pyx_t_2, __pyx_t_3); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1215; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_INCREF(__pyx_v_error);
  __pyx_t_3 = __pyx_v_error; __pyx_t_2 = NULL;
  if (CYTHON_COMPILING_IN_CPYTHON && unlikely(PyMethod_Check(__pyx_t_3))) {
    __pyx_t_2 = PyMethod_GET_SELF(__pyx_t_3);
    if (likely(__pyx_t_2)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
      __Pyx_INCREF(__pyx_t_2);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_3, function);
    }
  }
  if (!__pyx_t_2) {
    __pyx_t_1 = __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_4); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1215; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __Pyx_GOTREF(__pyx_t_1);
  } else {
    __pyx_t_5 = PyTuple_New(1+1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1215; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_2); PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_2); __pyx_t_2 = NULL;
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_5, 0+1, __pyx_t_4);
    __pyx_t_4 = 0;
    __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_3, __pyx_t_5, NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1215; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  }
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1215; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  /* "View.MemoryView":1214
 * 
 * @cname('__pyx_memoryview_err_dim')
 * cdef int _err_dim(object error, char *msg, int dim) except -1 with gil:             # <<<<<<<<<<<<<<
 *     raise error(msg.decode('ascii') % dim)
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView._err_dim", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __Pyx_XDECREF(__pyx_v_error);
  __Pyx_RefNannyFinishContext();
  #ifdef WITH_THREAD
  PyGILState_Release(__pyx_gilstate_save);
  #endif
  return __pyx_r;
}

/* "View.MemoryView":1218
 * 
 * @cname('__pyx_memoryview_err')
 * cdef int _err(object error, char *msg) except -1 with gil:             # <<<<<<<<<<<<<<
 *     if msg != NULL:
 *         raise error(msg.decode('ascii'))
 */

static int __pyx_memoryview_err(PyObject *__pyx_v_error, char *__pyx_v_msg) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  #ifdef WITH_THREAD
  PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();
  #endif
  __Pyx_RefNannySetupContext("_err", 0);
  __Pyx_INCREF(__pyx_v_error);

  /* "View.MemoryView":1219
 * @cname('__pyx_memoryview_err')
 * cdef int _err(object error, char *msg) except -1 with gil:
 *     if msg != NULL:             # <<<<<<<<<<<<<<
 *         raise error(msg.decode('ascii'))
 *     else:
 */
  __pyx_t_1 = ((__pyx_v_msg != NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1220
 * cdef int _err(object error, char *msg) except -1 with gil:
 *     if msg != NULL:
 *         raise error(msg.decode('ascii'))             # <<<<<<<<<<<<<<
 *     else:
 *         raise error
 */
    __pyx_t_3 = __Pyx_decode_c_string(__pyx_v_msg, 0, strlen(__pyx_v_msg), NULL, NULL, PyUnicode_DecodeASCII); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1220; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_INCREF(__pyx_v_error);
    __pyx_t_4 = __pyx_v_error; __pyx_t_5 = NULL;
    if (CYTHON_COMPILING_IN_CPYTHON && unlikely(PyMethod_Check(__pyx_t_4))) {
      __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
      if (likely(__pyx_t_5)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
        __Pyx_INCREF(__pyx_t_5);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_4, function);
      }
    }
    if (!__pyx_t_5) {
      __pyx_t_2 = __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_t_3); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1220; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      __Pyx_GOTREF(__pyx_t_2);
    } else {
      __pyx_t_6 = PyTuple_New(1+1); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1220; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_GIVEREF(__pyx_t_5); PyTuple_SET_ITEM(__pyx_t_6, 0, __pyx_t_5); __pyx_t_5 = NULL;
      __Pyx_GIVEREF(__pyx_t_3);
      PyTuple_SET_ITEM(__pyx_t_6, 0+1, __pyx_t_3);
      __pyx_t_3 = 0;
      __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_4, __pyx_t_6, NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1220; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      __Pyx_GOTREF(__pyx_t_2);
      __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    }
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __Pyx_Raise(__pyx_t_2, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1220; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":1219
 * @cname('__pyx_memoryview_err')
 * cdef int _err(object error, char *msg) except -1 with gil:
 *     if msg != NULL:             # <<<<<<<<<<<<<<
 *         raise error(msg.decode('ascii'))
 *     else:
 */
  }

  /* "View.MemoryView":1222
 *         raise error(msg.decode('ascii'))
 *     else:
 *         raise error             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_copy_contents')
 */
  /*else*/ {
    __Pyx_Raise(__pyx_v_error, 0, 0, 0);
    {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1222; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }

  /* "View.MemoryView":1218
 * 
 * @cname('__pyx_memoryview_err')
 * cdef int _err(object error, char *msg) except -1 with gil:             # <<<<<<<<<<<<<<
 *     if msg != NULL:
 *         raise error(msg.decode('ascii'))
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_AddTraceback("View.MemoryView._err", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __Pyx_XDECREF(__pyx_v_error);
  __Pyx_RefNannyFinishContext();
  #ifdef WITH_THREAD
  PyGILState_Release(__pyx_gilstate_save);
  #endif
  return __pyx_r;
}

/* "View.MemoryView":1225
 * 
 * @cname('__pyx_memoryview_copy_contents')
 * cdef int memoryview_copy_contents(__Pyx_memviewslice src,             # <<<<<<<<<<<<<<
 *                                   __Pyx_memviewslice dst,
 *                                   int src_ndim, int dst_ndim,
 */

static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_memviewslice __pyx_v_dst, int __pyx_v_src_ndim, int __pyx_v_dst_ndim, int __pyx_v_dtype_is_object) {
  void *__pyx_v_tmpdata;
  size_t __pyx_v_itemsize;
  int __pyx_v_i;
  char __pyx_v_order;
  int __pyx_v_broadcasting;
  int __pyx_v_direct_copy;
  __Pyx_memviewslice __pyx_v_tmp;
  int __pyx_v_ndim;
  int __pyx_r;
  Py_ssize_t __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;
  int __pyx_t_5;
  void *__pyx_t_6;
  int __pyx_t_7;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;

  /* "View.MemoryView":1233
 *     Check for overlapping memory and verify the shapes.
 *     """
 *     cdef void *tmpdata = NULL             # <<<<<<<<<<<<<<
 *     cdef size_t itemsize = src.memview.view.itemsize
 *     cdef int i
 */
  __pyx_v_tmpdata = NULL;

  /* "View.MemoryView":1234
 *     """
 *     cdef void *tmpdata = NULL
 *     cdef size_t itemsize = src.memview.view.itemsize             # <<<<<<<<<<<<<<
 *     cdef int i
 *     cdef char order = get_best_order(&src, src_ndim)
 */
  __pyx_t_1 = __pyx_v_src.memview->view.itemsize;
  __pyx_v_itemsize = __pyx_t_1;

  /* "View.MemoryView":1236
 *     cdef size_t itemsize = src.memview.view.itemsize
 *     cdef int i
 *     cdef char order = get_best_order(&src, src_ndim)             # <<<<<<<<<<<<<<
 *     cdef bint broadcasting = False
 *     cdef bint direct_copy = False
 */
  __pyx_v_order = __pyx_get_best_slice_order((&__pyx_v_src), __pyx_v_src_ndim);

  /* "View.MemoryView":1237
 *     cdef int i
 *     cdef char order = get_best_order(&src, src_ndim)
 *     cdef bint broadcasting = False             # <<<<<<<<<<<<<<
 *     cdef bint direct_copy = False
 *     cdef __Pyx_memviewslice tmp
 */
  __pyx_v_broadcasting = 0;

  /* "View.MemoryView":1238
 *     cdef char order = get_best_order(&src, src_ndim)
 *     cdef bint broadcasting = False
 *     cdef bint direct_copy = False             # <<<<<<<<<<<<<<
 *     cdef __Pyx_memviewslice tmp
 * 
 */
  __pyx_v_direct_copy = 0;

  /* "View.MemoryView":1241
 *     cdef __Pyx_memviewslice tmp
 * 
 *     if src_ndim < dst_ndim:             # <<<<<<<<<<<<<<
 *         broadcast_leading(&src, src_ndim, dst_ndim)
 *     elif dst_ndim < src_ndim:
 */
  __pyx_t_2 = ((__pyx_v_src_ndim < __pyx_v_dst_ndim) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1242
 * 
 *     if src_ndim < dst_ndim:
 *         broadcast_leading(&src, src_ndim, dst_ndim)             # <<<<<<<<<<<<<<
 *     elif dst_ndim < src_ndim:
 *         broadcast_leading(&dst, dst_ndim, src_ndim)
 */
    __pyx_memoryview_broadcast_leading((&__pyx_v_src), __pyx_v_src_ndim, __pyx_v_dst_ndim);

    /* "View.MemoryView":1241
 *     cdef __Pyx_memviewslice tmp
 * 
 *     if src_ndim < dst_ndim:             # <<<<<<<<<<<<<<
 *         broadcast_leading(&src, src_ndim, dst_ndim)
 *     elif dst_ndim < src_ndim:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":1243
 *     if src_ndim < dst_ndim:
 *         broadcast_leading(&src, src_ndim, dst_ndim)
 *     elif dst_ndim < src_ndim:             # <<<<<<<<<<<<<<
 *         broadcast_leading(&dst, dst_ndim, src_ndim)
 * 
 */
  __pyx_t_2 = ((__pyx_v_dst_ndim < __pyx_v_src_ndim) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1244
 *         broadcast_leading(&src, src_ndim, dst_ndim)
 *     elif dst_ndim < src_ndim:
 *         broadcast_leading(&dst, dst_ndim, src_ndim)             # <<<<<<<<<<<<<<
 * 
 *     cdef int ndim = max(src_ndim, dst_ndim)
 */
    __pyx_memoryview_broadcast_leading((&__pyx_v_dst), __pyx_v_dst_ndim, __pyx_v_src_ndim);

    /* "View.MemoryView":1243
 *     if src_ndim < dst_ndim:
 *         broadcast_leading(&src, src_ndim, dst_ndim)
 *     elif dst_ndim < src_ndim:             # <<<<<<<<<<<<<<
 *         broadcast_leading(&dst, dst_ndim, src_ndim)
 * 
 */
  }
  __pyx_L3:;

  /* "View.MemoryView":1246
 *         broadcast_leading(&dst, dst_ndim, src_ndim)
 * 
 *     cdef int ndim = max(src_ndim, dst_ndim)             # <<<<<<<<<<<<<<
 * 
 *     for i in range(ndim):
 */
  __pyx_t_3 = __pyx_v_dst_ndim;
  __pyx_t_4 = __pyx_v_src_ndim;
  if (((__pyx_t_3 > __pyx_t_4) != 0)) {
    __pyx_t_5 = __pyx_t_3;
  } else {
    __pyx_t_5 = __pyx_t_4;
  }
  __pyx_v_ndim = __pyx_t_5;

  /* "View.MemoryView":1248
 *     cdef int ndim = max(src_ndim, dst_ndim)
 * 
 *     for i in range(ndim):             # <<<<<<<<<<<<<<
 *         if src.shape[i] != dst.shape[i]:
 *             if src.shape[i] == 1:
 */
  __pyx_t_5 = __pyx_v_ndim;
  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_5; __pyx_t_3+=1) {
    __pyx_v_i = __pyx_t_3;

    /* "View.MemoryView":1249
 * 
 *     for i in range(ndim):
 *         if src.shape[i] != dst.shape[i]:             # <<<<<<<<<<<<<<
 *             if src.shape[i] == 1:
 *                 broadcasting = True
 */
    __pyx_t_2 = (((__pyx_v_src.shape[__pyx_v_i]) != (__pyx_v_dst.shape[__pyx_v_i])) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1250
 *     for i in range(ndim):
 *         if src.shape[i] != dst.shape[i]:
 *             if src.shape[i] == 1:             # <<<<<<<<<<<<<<
 *                 broadcasting = True
 *                 src.strides[i] = 0
 */
      __pyx_t_2 = (((__pyx_v_src.shape[__pyx_v_i]) == 1) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":1251
 *         if src.shape[i] != dst.shape[i]:
 *             if src.shape[i] == 1:
 *                 broadcasting = True             # <<<<<<<<<<<<<<
 *                 src.strides[i] = 0
 *             else:
 */
        __pyx_v_broadcasting = 1;

        /* "View.MemoryView":1252
 *             if src.shape[i] == 1:
 *                 broadcasting = True
 *                 src.strides[i] = 0             # <<<<<<<<<<<<<<
 *             else:
 *                 _err_extents(i, dst.shape[i], src.shape[i])
 */
        (__pyx_v_src.strides[__pyx_v_i]) = 0;

        /* "View.MemoryView":1250
 *     for i in range(ndim):
 *         if src.shape[i] != dst.shape[i]:
 *             if src.shape[i] == 1:             # <<<<<<<<<<<<<<
 *                 broadcasting = True
 *                 src.strides[i] = 0
 */
        goto __pyx_L7;
      }

      /* "View.MemoryView":1254
 *                 src.strides[i] = 0
 *             else:
 *                 _err_extents(i, dst.shape[i], src.shape[i])             # <<<<<<<<<<<<<<
 * 
 *         if src.suboffsets[i] >= 0:
 */
      /*else*/ {
        __pyx_t_4 = __pyx_memoryview_err_extents(__pyx_v_i, (__pyx_v_dst.shape[__pyx_v_i]), (__pyx_v_src.shape[__pyx_v_i])); if (unlikely(__pyx_t_4 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1254; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
      }
      __pyx_L7:;

      /* "View.MemoryView":1249
 * 
 *     for i in range(ndim):
 *         if src.shape[i] != dst.shape[i]:             # <<<<<<<<<<<<<<
 *             if src.shape[i] == 1:
 *                 broadcasting = True
 */
    }

    /* "View.MemoryView":1256
 *                 _err_extents(i, dst.shape[i], src.shape[i])
 * 
 *         if src.suboffsets[i] >= 0:             # <<<<<<<<<<<<<<
 *             _err_dim(ValueError, "Dimension %d is not direct", i)
 * 
 */
    __pyx_t_2 = (((__pyx_v_src.suboffsets[__pyx_v_i]) >= 0) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1257
 * 
 *         if src.suboffsets[i] >= 0:
 *             _err_dim(ValueError, "Dimension %d is not direct", i)             # <<<<<<<<<<<<<<
 * 
 *     if slices_overlap(&src, &dst, ndim, itemsize):
 */
      __pyx_t_4 = __pyx_memoryview_err_dim(__pyx_builtin_ValueError, __pyx_k_Dimension_d_is_not_direct, __pyx_v_i); if (unlikely(__pyx_t_4 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1257; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

      /* "View.MemoryView":1256
 *                 _err_extents(i, dst.shape[i], src.shape[i])
 * 
 *         if src.suboffsets[i] >= 0:             # <<<<<<<<<<<<<<
 *             _err_dim(ValueError, "Dimension %d is not direct", i)
 * 
 */
    }
  }

  /* "View.MemoryView":1259
 *             _err_dim(ValueError, "Dimension %d is not direct", i)
 * 
 *     if slices_overlap(&src, &dst, ndim, itemsize):             # <<<<<<<<<<<<<<
 * 
 *         if not slice_is_contig(&src, order, ndim):
 */
  __pyx_t_2 = (__pyx_slices_overlap((&__pyx_v_src), (&__pyx_v_dst), __pyx_v_ndim, __pyx_v_itemsize) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1261
 *     if slices_overlap(&src, &dst, ndim, itemsize):
 * 
 *         if not slice_is_contig(&src, order, ndim):             # <<<<<<<<<<<<<<
 *             order = get_best_order(&dst, ndim)
 * 
 */
    __pyx_t_2 = ((!(__pyx_memviewslice_is_contig((&__pyx_v_src), __pyx_v_order, __pyx_v_ndim) != 0)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1262
 * 
 *         if not slice_is_contig(&src, order, ndim):
 *             order = get_best_order(&dst, ndim)             # <<<<<<<<<<<<<<
 * 
 *         tmpdata = copy_data_to_temp(&src, &tmp, order, ndim)
 */
      __pyx_v_order = __pyx_get_best_slice_order((&__pyx_v_dst), __pyx_v_ndim);

      /* "View.MemoryView":1261
 *     if slices_overlap(&src, &dst, ndim, itemsize):
 * 
 *         if not slice_is_contig(&src, order, ndim):             # <<<<<<<<<<<<<<
 *             order = get_best_order(&dst, ndim)
 * 
 */
    }

    /* "View.MemoryView":1264
 *             order = get_best_order(&dst, ndim)
 * 
 *         tmpdata = copy_data_to_temp(&src, &tmp, order, ndim)             # <<<<<<<<<<<<<<
 *         src = tmp
 * 
 */
    __pyx_t_6 = __pyx_memoryview_copy_data_to_temp((&__pyx_v_src), (&__pyx_v_tmp), __pyx_v_order, __pyx_v_ndim); if (unlikely(__pyx_t_6 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1264; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    __pyx_v_tmpdata = __pyx_t_6;

    /* "View.MemoryView":1265
 * 
 *         tmpdata = copy_data_to_temp(&src, &tmp, order, ndim)
 *         src = tmp             # <<<<<<<<<<<<<<
 * 
 *     if not broadcasting:
 */
    __pyx_v_src = __pyx_v_tmp;

    /* "View.MemoryView":1259
 *             _err_dim(ValueError, "Dimension %d is not direct", i)
 * 
 *     if slices_overlap(&src, &dst, ndim, itemsize):             # <<<<<<<<<<<<<<
 * 
 *         if not slice_is_contig(&src, order, ndim):
 */
  }

  /* "View.MemoryView":1267
 *         src = tmp
 * 
 *     if not broadcasting:             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_2 = ((!(__pyx_v_broadcasting != 0)) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1270
 * 
 * 
 *         if slice_is_contig(&src, 'C', ndim):             # <<<<<<<<<<<<<<
 *             direct_copy = slice_is_contig(&dst, 'C', ndim)
 *         elif slice_is_contig(&src, 'F', ndim):
 */
    __pyx_t_2 = (__pyx_memviewslice_is_contig((&__pyx_v_src), 'C', __pyx_v_ndim) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1271
 * 
 *         if slice_is_contig(&src, 'C', ndim):
 *             direct_copy = slice_is_contig(&dst, 'C', ndim)             # <<<<<<<<<<<<<<
 *         elif slice_is_contig(&src, 'F', ndim):
 *             direct_copy = slice_is_contig(&dst, 'F', ndim)
 */
      __pyx_v_direct_copy = __pyx_memviewslice_is_contig((&__pyx_v_dst), 'C', __pyx_v_ndim);

      /* "View.MemoryView":1270
 * 
 * 
 *         if slice_is_contig(&src, 'C', ndim):             # <<<<<<<<<<<<<<
 *             direct_copy = slice_is_contig(&dst, 'C', ndim)
 *         elif slice_is_contig(&src, 'F', ndim):
 */
      goto __pyx_L12;
    }

    /* "View.MemoryView":1272
 *         if slice_is_contig(&src, 'C', ndim):
 *             direct_copy = slice_is_contig(&dst, 'C', ndim)
 *         elif slice_is_contig(&src, 'F', ndim):             # <<<<<<<<<<<<<<
 *             direct_copy = slice_is_contig(&dst, 'F', ndim)
 * 
 */
    __pyx_t_2 = (__pyx_memviewslice_is_contig((&__pyx_v_src), 'F', __pyx_v_ndim) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1273
 *             direct_copy = slice_is_contig(&dst, 'C', ndim)
 *         elif slice_is_contig(&src, 'F', ndim):
 *             direct_copy = slice_is_contig(&dst, 'F', ndim)             # <<<<<<<<<<<<<<
 * 
 *         if direct_copy:
 */
      __pyx_v_direct_copy = __pyx_memviewslice_is_contig((&__pyx_v_dst), 'F', __pyx_v_ndim);

      /* "View.MemoryView":1272
 *         if slice_is_contig(&src, 'C', ndim):
 *             direct_copy = slice_is_contig(&dst, 'C', ndim)
 *         elif slice_is_contig(&src, 'F', ndim):             # <<<<<<<<<<<<<<
 *             direct_copy = slice_is_contig(&dst, 'F', ndim)
 * 
 */
    }
    __pyx_L12:;

    /* "View.MemoryView":1275
 *             direct_copy = slice_is_contig(&dst, 'F', ndim)
 * 
 *         if direct_copy:             # <<<<<<<<<<<<<<
 * 
 *             refcount_copying(&dst, dtype_is_object, ndim, False)
 */
    __pyx_t_2 = (__pyx_v_direct_copy != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1277
 *         if direct_copy:
 * 
 *             refcount_copying(&dst, dtype_is_object, ndim, False)             # <<<<<<<<<<<<<<
 *             memcpy(dst.data, src.data, slice_get_size(&src, ndim))
 *             refcount_copying(&dst, dtype_is_object, ndim, True)
 */
      __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 0);

      /* "View.MemoryView":1278
 * 
 *             refcount_copying(&dst, dtype_is_object, ndim, False)
 *             memcpy(dst.data, src.data, slice_get_size(&src, ndim))             # <<<<<<<<<<<<<<
 *             refcount_copying(&dst, dtype_is_object, ndim, True)
 *             free(tmpdata)
 */
      memcpy(__pyx_v_dst.data, __pyx_v_src.data, __pyx_memoryview_slice_get_size((&__pyx_v_src), __pyx_v_ndim));

      /* "View.MemoryView":1279
 *             refcount_copying(&dst, dtype_is_object, ndim, False)
 *             memcpy(dst.data, src.data, slice_get_size(&src, ndim))
 *             refcount_copying(&dst, dtype_is_object, ndim, True)             # <<<<<<<<<<<<<<
 *             free(tmpdata)
 *             return 0
 */
      __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 1);

      /* "View.MemoryView":1280
 *             memcpy(dst.data, src.data, slice_get_size(&src, ndim))
 *             refcount_copying(&dst, dtype_is_object, ndim, True)
 *             free(tmpdata)             # <<<<<<<<<<<<<<
 *             return 0
 * 
 */
      free(__pyx_v_tmpdata);

      /* "View.MemoryView":1281
 *             refcount_copying(&dst, dtype_is_object, ndim, True)
 *             free(tmpdata)
 *             return 0             # <<<<<<<<<<<<<<
 * 
 *     if order == 'F' == get_best_order(&dst, ndim):
 */
      __pyx_r = 0;
      goto __pyx_L0;

      /* "View.MemoryView":1275
 *             direct_copy = slice_is_contig(&dst, 'F', ndim)
 * 
 *         if direct_copy:             # <<<<<<<<<<<<<<
 * 
 *             refcount_copying(&dst, dtype_is_object, ndim, False)
 */
    }

    /* "View.MemoryView":1267
 *         src = tmp
 * 
 *     if not broadcasting:             # <<<<<<<<<<<<<<
 * 
 * 
 */
  }

  /* "View.MemoryView":1283
 *             return 0
 * 
 *     if order == 'F' == get_best_order(&dst, ndim):             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_2 = (__pyx_v_order == 'F');
  if (__pyx_t_2) {
    __pyx_t_2 = ('F' == __pyx_get_best_slice_order((&__pyx_v_dst), __pyx_v_ndim));
  }
  __pyx_t_7 = (__pyx_t_2 != 0);
  if (__pyx_t_7) {

    /* "View.MemoryView":1286
 * 
 * 
 *         transpose_memslice(&src)             # <<<<<<<<<<<<<<
 *         transpose_memslice(&dst)
 * 
 */
    __pyx_t_5 = __pyx_memslice_transpose((&__pyx_v_src)); if (unlikely(__pyx_t_5 == 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1286; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":1287
 * 
 *         transpose_memslice(&src)
 *         transpose_memslice(&dst)             # <<<<<<<<<<<<<<
 * 
 *     refcount_copying(&dst, dtype_is_object, ndim, False)
 */
    __pyx_t_5 = __pyx_memslice_transpose((&__pyx_v_dst)); if (unlikely(__pyx_t_5 == 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1287; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

    /* "View.MemoryView":1283
 *             return 0
 * 
 *     if order == 'F' == get_best_order(&dst, ndim):             # <<<<<<<<<<<<<<
 * 
 * 
 */
  }

  /* "View.MemoryView":1289
 *         transpose_memslice(&dst)
 * 
 *     refcount_copying(&dst, dtype_is_object, ndim, False)             # <<<<<<<<<<<<<<
 *     copy_strided_to_strided(&src, &dst, ndim, itemsize)
 *     refcount_copying(&dst, dtype_is_object, ndim, True)
 */
  __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 0);

  /* "View.MemoryView":1290
 * 
 *     refcount_copying(&dst, dtype_is_object, ndim, False)
 *     copy_strided_to_strided(&src, &dst, ndim, itemsize)             # <<<<<<<<<<<<<<
 *     refcount_copying(&dst, dtype_is_object, ndim, True)
 * 
 */
  copy_strided_to_strided((&__pyx_v_src), (&__pyx_v_dst), __pyx_v_ndim, __pyx_v_itemsize);

  /* "View.MemoryView":1291
 *     refcount_copying(&dst, dtype_is_object, ndim, False)
 *     copy_strided_to_strided(&src, &dst, ndim, itemsize)
 *     refcount_copying(&dst, dtype_is_object, ndim, True)             # <<<<<<<<<<<<<<
 * 
 *     free(tmpdata)
 */
  __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 1);

  /* "View.MemoryView":1293
 *     refcount_copying(&dst, dtype_is_object, ndim, True)
 * 
 *     free(tmpdata)             # <<<<<<<<<<<<<<
 *     return 0
 * 
 */
  free(__pyx_v_tmpdata);

  /* "View.MemoryView":1294
 * 
 *     free(tmpdata)
 *     return 0             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_broadcast_leading')
 */
  __pyx_r = 0;
  goto __pyx_L0;

  /* "View.MemoryView":1225
 * 
 * @cname('__pyx_memoryview_copy_contents')
 * cdef int memoryview_copy_contents(__Pyx_memviewslice src,             # <<<<<<<<<<<<<<
 *                                   __Pyx_memviewslice dst,
 *                                   int src_ndim, int dst_ndim,
 */

  /* function exit code */
  __pyx_L1_error:;
  {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();
    #endif
    __Pyx_AddTraceback("View.MemoryView.memoryview_copy_contents", __pyx_clineno, __pyx_lineno, __pyx_filename);
    #ifdef WITH_THREAD
    PyGILState_Release(__pyx_gilstate_save);
    #endif
  }
  __pyx_r = -1;
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1297
 * 
 * @cname('__pyx_memoryview_broadcast_leading')
 * cdef void broadcast_leading(__Pyx_memviewslice *mslice,             # <<<<<<<<<<<<<<
 *                             int ndim,
 *                             int ndim_other) nogil:
 */

static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslice, int __pyx_v_ndim, int __pyx_v_ndim_other) {
  int __pyx_v_i;
  int __pyx_v_offset;
  int __pyx_t_1;
  int __pyx_t_2;

  /* "View.MemoryView":1301
 *                             int ndim_other) nogil:
 *     cdef int i
 *     cdef int offset = ndim_other - ndim             # <<<<<<<<<<<<<<
 * 
 *     for i in range(ndim - 1, -1, -1):
 */
  __pyx_v_offset = (__pyx_v_ndim_other - __pyx_v_ndim);

  /* "View.MemoryView":1303
 *     cdef int offset = ndim_other - ndim
 * 
 *     for i in range(ndim - 1, -1, -1):             # <<<<<<<<<<<<<<
 *         mslice.shape[i + offset] = mslice.shape[i]
 *         mslice.strides[i + offset] = mslice.strides[i]
 */
  for (__pyx_t_1 = (__pyx_v_ndim - 1); __pyx_t_1 > -1L; __pyx_t_1-=1) {
    __pyx_v_i = __pyx_t_1;

    /* "View.MemoryView":1304
 * 
 *     for i in range(ndim - 1, -1, -1):
 *         mslice.shape[i + offset] = mslice.shape[i]             # <<<<<<<<<<<<<<
 *         mslice.strides[i + offset] = mslice.strides[i]
 *         mslice.suboffsets[i + offset] = mslice.suboffsets[i]
 */
    (__pyx_v_mslice->shape[(__pyx_v_i + __pyx_v_offset)]) = (__pyx_v_mslice->shape[__pyx_v_i]);

    /* "View.MemoryView":1305
 *     for i in range(ndim - 1, -1, -1):
 *         mslice.shape[i + offset] = mslice.shape[i]
 *         mslice.strides[i + offset] = mslice.strides[i]             # <<<<<<<<<<<<<<
 *         mslice.suboffsets[i + offset] = mslice.suboffsets[i]
 * 
 */
    (__pyx_v_mslice->strides[(__pyx_v_i + __pyx_v_offset)]) = (__pyx_v_mslice->strides[__pyx_v_i]);

    /* "View.MemoryView":1306
 *         mslice.shape[i + offset] = mslice.shape[i]
 *         mslice.strides[i + offset] = mslice.strides[i]
 *         mslice.suboffsets[i + offset] = mslice.suboffsets[i]             # <<<<<<<<<<<<<<
 * 
 *     for i in range(offset):
 */
    (__pyx_v_mslice->suboffsets[(__pyx_v_i + __pyx_v_offset)]) = (__pyx_v_mslice->suboffsets[__pyx_v_i]);
  }

  /* "View.MemoryView":1308
 *         mslice.suboffsets[i + offset] = mslice.suboffsets[i]
 * 
 *     for i in range(offset):             # <<<<<<<<<<<<<<
 *         mslice.shape[i] = 1
 *         mslice.strides[i] = mslice.strides[0]
 */
  __pyx_t_1 = __pyx_v_offset;
  for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
    __pyx_v_i = __pyx_t_2;

    /* "View.MemoryView":1309
 * 
 *     for i in range(offset):
 *         mslice.shape[i] = 1             # <<<<<<<<<<<<<<
 *         mslice.strides[i] = mslice.strides[0]
 *         mslice.suboffsets[i] = -1
 */
    (__pyx_v_mslice->shape[__pyx_v_i]) = 1;

    /* "View.MemoryView":1310
 *     for i in range(offset):
 *         mslice.shape[i] = 1
 *         mslice.strides[i] = mslice.strides[0]             # <<<<<<<<<<<<<<
 *         mslice.suboffsets[i] = -1
 * 
 */
    (__pyx_v_mslice->strides[__pyx_v_i]) = (__pyx_v_mslice->strides[0]);

    /* "View.MemoryView":1311
 *         mslice.shape[i] = 1
 *         mslice.strides[i] = mslice.strides[0]
 *         mslice.suboffsets[i] = -1             # <<<<<<<<<<<<<<
 * 
 * 
 */
    (__pyx_v_mslice->suboffsets[__pyx_v_i]) = -1L;
  }

  /* "View.MemoryView":1297
 * 
 * @cname('__pyx_memoryview_broadcast_leading')
 * cdef void broadcast_leading(__Pyx_memviewslice *mslice,             # <<<<<<<<<<<<<<
 *                             int ndim,
 *                             int ndim_other) nogil:
 */

  /* function exit code */
}

/* "View.MemoryView":1319
 * 
 * @cname('__pyx_memoryview_refcount_copying')
 * cdef void refcount_copying(__Pyx_memviewslice *dst, bint dtype_is_object,             # <<<<<<<<<<<<<<
 *                            int ndim, bint inc) nogil:
 * 
 */

static void __pyx_memoryview_refcount_copying(__Pyx_memviewslice *__pyx_v_dst, int __pyx_v_dtype_is_object, int __pyx_v_ndim, int __pyx_v_inc) {
  int __pyx_t_1;

  /* "View.MemoryView":1323
 * 
 * 
 *     if dtype_is_object:             # <<<<<<<<<<<<<<
 *         refcount_objects_in_slice_with_gil(dst.data, dst.shape,
 *                                            dst.strides, ndim, inc)
 */
  __pyx_t_1 = (__pyx_v_dtype_is_object != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1324
 * 
 *     if dtype_is_object:
 *         refcount_objects_in_slice_with_gil(dst.data, dst.shape,             # <<<<<<<<<<<<<<
 *                                            dst.strides, ndim, inc)
 * 
 */
    __pyx_memoryview_refcount_objects_in_slice_with_gil(__pyx_v_dst->data, __pyx_v_dst->shape, __pyx_v_dst->strides, __pyx_v_ndim, __pyx_v_inc);

    /* "View.MemoryView":1323
 * 
 * 
 *     if dtype_is_object:             # <<<<<<<<<<<<<<
 *         refcount_objects_in_slice_with_gil(dst.data, dst.shape,
 *                                            dst.strides, ndim, inc)
 */
  }

  /* "View.MemoryView":1319
 * 
 * @cname('__pyx_memoryview_refcount_copying')
 * cdef void refcount_copying(__Pyx_memviewslice *dst, bint dtype_is_object,             # <<<<<<<<<<<<<<
 *                            int ndim, bint inc) nogil:
 * 
 */

  /* function exit code */
}

/* "View.MemoryView":1328
 * 
 * @cname('__pyx_memoryview_refcount_objects_in_slice_with_gil')
 * cdef void refcount_objects_in_slice_with_gil(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                                              Py_ssize_t *strides, int ndim,
 *                                              bint inc) with gil:
 */

static void __pyx_memoryview_refcount_objects_in_slice_with_gil(char *__pyx_v_data, Py_ssize_t *__pyx_v_shape, Py_ssize_t *__pyx_v_strides, int __pyx_v_ndim, int __pyx_v_inc) {
  __Pyx_RefNannyDeclarations
  #ifdef WITH_THREAD
  PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();
  #endif
  __Pyx_RefNannySetupContext("refcount_objects_in_slice_with_gil", 0);

  /* "View.MemoryView":1331
 *                                              Py_ssize_t *strides, int ndim,
 *                                              bint inc) with gil:
 *     refcount_objects_in_slice(data, shape, strides, ndim, inc)             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_refcount_objects_in_slice')
 */
  __pyx_memoryview_refcount_objects_in_slice(__pyx_v_data, __pyx_v_shape, __pyx_v_strides, __pyx_v_ndim, __pyx_v_inc);

  /* "View.MemoryView":1328
 * 
 * @cname('__pyx_memoryview_refcount_objects_in_slice_with_gil')
 * cdef void refcount_objects_in_slice_with_gil(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                                              Py_ssize_t *strides, int ndim,
 *                                              bint inc) with gil:
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  #ifdef WITH_THREAD
  PyGILState_Release(__pyx_gilstate_save);
  #endif
}

/* "View.MemoryView":1334
 * 
 * @cname('__pyx_memoryview_refcount_objects_in_slice')
 * cdef void refcount_objects_in_slice(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                                     Py_ssize_t *strides, int ndim, bint inc):
 *     cdef Py_ssize_t i
 */

static void __pyx_memoryview_refcount_objects_in_slice(char *__pyx_v_data, Py_ssize_t *__pyx_v_shape, Py_ssize_t *__pyx_v_strides, int __pyx_v_ndim, int __pyx_v_inc) {
  CYTHON_UNUSED Py_ssize_t __pyx_v_i;
  __Pyx_RefNannyDeclarations
  Py_ssize_t __pyx_t_1;
  Py_ssize_t __pyx_t_2;
  int __pyx_t_3;
  __Pyx_RefNannySetupContext("refcount_objects_in_slice", 0);

  /* "View.MemoryView":1338
 *     cdef Py_ssize_t i
 * 
 *     for i in range(shape[0]):             # <<<<<<<<<<<<<<
 *         if ndim == 1:
 *             if inc:
 */
  __pyx_t_1 = (__pyx_v_shape[0]);
  for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
    __pyx_v_i = __pyx_t_2;

    /* "View.MemoryView":1339
 * 
 *     for i in range(shape[0]):
 *         if ndim == 1:             # <<<<<<<<<<<<<<
 *             if inc:
 *                 Py_INCREF((<PyObject **> data)[0])
 */
    __pyx_t_3 = ((__pyx_v_ndim == 1) != 0);
    if (__pyx_t_3) {

      /* "View.MemoryView":1340
 *     for i in range(shape[0]):
 *         if ndim == 1:
 *             if inc:             # <<<<<<<<<<<<<<
 *                 Py_INCREF((<PyObject **> data)[0])
 *             else:
 */
      __pyx_t_3 = (__pyx_v_inc != 0);
      if (__pyx_t_3) {

        /* "View.MemoryView":1341
 *         if ndim == 1:
 *             if inc:
 *                 Py_INCREF((<PyObject **> data)[0])             # <<<<<<<<<<<<<<
 *             else:
 *                 Py_DECREF((<PyObject **> data)[0])
 */
        Py_INCREF((((PyObject **)__pyx_v_data)[0]));

        /* "View.MemoryView":1340
 *     for i in range(shape[0]):
 *         if ndim == 1:
 *             if inc:             # <<<<<<<<<<<<<<
 *                 Py_INCREF((<PyObject **> data)[0])
 *             else:
 */
        goto __pyx_L6;
      }

      /* "View.MemoryView":1343
 *                 Py_INCREF((<PyObject **> data)[0])
 *             else:
 *                 Py_DECREF((<PyObject **> data)[0])             # <<<<<<<<<<<<<<
 *         else:
 *             refcount_objects_in_slice(data, shape + 1, strides + 1,
 */
      /*else*/ {
        Py_DECREF((((PyObject **)__pyx_v_data)[0]));
      }
      __pyx_L6:;

      /* "View.MemoryView":1339
 * 
 *     for i in range(shape[0]):
 *         if ndim == 1:             # <<<<<<<<<<<<<<
 *             if inc:
 *                 Py_INCREF((<PyObject **> data)[0])
 */
      goto __pyx_L5;
    }

    /* "View.MemoryView":1345
 *                 Py_DECREF((<PyObject **> data)[0])
 *         else:
 *             refcount_objects_in_slice(data, shape + 1, strides + 1,             # <<<<<<<<<<<<<<
 *                                       ndim - 1, inc)
 * 
 */
    /*else*/ {

      /* "View.MemoryView":1346
 *         else:
 *             refcount_objects_in_slice(data, shape + 1, strides + 1,
 *                                       ndim - 1, inc)             # <<<<<<<<<<<<<<
 * 
 *         data += strides[0]
 */
      __pyx_memoryview_refcount_objects_in_slice(__pyx_v_data, (__pyx_v_shape + 1), (__pyx_v_strides + 1), (__pyx_v_ndim - 1), __pyx_v_inc);
    }
    __pyx_L5:;

    /* "View.MemoryView":1348
 *                                       ndim - 1, inc)
 * 
 *         data += strides[0]             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __pyx_v_data = (__pyx_v_data + (__pyx_v_strides[0]));
  }

  /* "View.MemoryView":1334
 * 
 * @cname('__pyx_memoryview_refcount_objects_in_slice')
 * cdef void refcount_objects_in_slice(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                                     Py_ssize_t *strides, int ndim, bint inc):
 *     cdef Py_ssize_t i
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "View.MemoryView":1354
 * 
 * @cname('__pyx_memoryview_slice_assign_scalar')
 * cdef void slice_assign_scalar(__Pyx_memviewslice *dst, int ndim,             # <<<<<<<<<<<<<<
 *                               size_t itemsize, void *item,
 *                               bint dtype_is_object) nogil:
 */

static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *__pyx_v_dst, int __pyx_v_ndim, size_t __pyx_v_itemsize, void *__pyx_v_item, int __pyx_v_dtype_is_object) {

  /* "View.MemoryView":1357
 *                               size_t itemsize, void *item,
 *                               bint dtype_is_object) nogil:
 *     refcount_copying(dst, dtype_is_object, ndim, False)             # <<<<<<<<<<<<<<
 *     _slice_assign_scalar(dst.data, dst.shape, dst.strides, ndim,
 *                          itemsize, item)
 */
  __pyx_memoryview_refcount_copying(__pyx_v_dst, __pyx_v_dtype_is_object, __pyx_v_ndim, 0);

  /* "View.MemoryView":1358
 *                               bint dtype_is_object) nogil:
 *     refcount_copying(dst, dtype_is_object, ndim, False)
 *     _slice_assign_scalar(dst.data, dst.shape, dst.strides, ndim,             # <<<<<<<<<<<<<<
 *                          itemsize, item)
 *     refcount_copying(dst, dtype_is_object, ndim, True)
 */
  __pyx_memoryview__slice_assign_scalar(__pyx_v_dst->data, __pyx_v_dst->shape, __pyx_v_dst->strides, __pyx_v_ndim, __pyx_v_itemsize, __pyx_v_item);

  /* "View.MemoryView":1360
 *     _slice_assign_scalar(dst.data, dst.shape, dst.strides, ndim,
 *                          itemsize, item)
 *     refcount_copying(dst, dtype_is_object, ndim, True)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_memoryview_refcount_copying(__pyx_v_dst, __pyx_v_dtype_is_object, __pyx_v_ndim, 1);

  /* "View.MemoryView":1354
 * 
 * @cname('__pyx_memoryview_slice_assign_scalar')
 * cdef void slice_assign_scalar(__Pyx_memviewslice *dst, int ndim,             # <<<<<<<<<<<<<<
 *                               size_t itemsize, void *item,
 *                               bint dtype_is_object) nogil:
 */

  /* function exit code */
}

/* "View.MemoryView":1364
 * 
 * @cname('__pyx_memoryview__slice_assign_scalar')
 * cdef void _slice_assign_scalar(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                               Py_ssize_t *strides, int ndim,
 *                               size_t itemsize, void *item) nogil:
 */

static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t *__pyx_v_shape, Py_ssize_t *__pyx_v_strides, int __pyx_v_ndim, size_t __pyx_v_itemsize, void *__pyx_v_item) {
  CYTHON_UNUSED Py_ssize_t __pyx_v_i;
  Py_ssize_t __pyx_v_stride;
  Py_ssize_t __pyx_v_extent;
  int __pyx_t_1;
  Py_ssize_t __pyx_t_2;
  Py_ssize_t __pyx_t_3;

  /* "View.MemoryView":1368
 *                               size_t itemsize, void *item) nogil:
 *     cdef Py_ssize_t i
 *     cdef Py_ssize_t stride = strides[0]             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t extent = shape[0]
 * 
 */
  __pyx_v_stride = (__pyx_v_strides[0]);

  /* "View.MemoryView":1369
 *     cdef Py_ssize_t i
 *     cdef Py_ssize_t stride = strides[0]
 *     cdef Py_ssize_t extent = shape[0]             # <<<<<<<<<<<<<<
 * 
 *     if ndim == 1:
 */
  __pyx_v_extent = (__pyx_v_shape[0]);

  /* "View.MemoryView":1371
 *     cdef Py_ssize_t extent = shape[0]
 * 
 *     if ndim == 1:             # <<<<<<<<<<<<<<
 *         for i in range(extent):
 *             memcpy(data, item, itemsize)
 */
  __pyx_t_1 = ((__pyx_v_ndim == 1) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1372
 * 
 *     if ndim == 1:
 *         for i in range(extent):             # <<<<<<<<<<<<<<
 *             memcpy(data, item, itemsize)
 *             data += stride
 */
    __pyx_t_2 = __pyx_v_extent;
    for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
      __pyx_v_i = __pyx_t_3;

      /* "View.MemoryView":1373
 *     if ndim == 1:
 *         for i in range(extent):
 *             memcpy(data, item, itemsize)             # <<<<<<<<<<<<<<
 *             data += stride
 *     else:
 */
      memcpy(__pyx_v_data, __pyx_v_item, __pyx_v_itemsize);

      /* "View.MemoryView":1374
 *         for i in range(extent):
 *             memcpy(data, item, itemsize)
 *             data += stride             # <<<<<<<<<<<<<<
 *     else:
 *         for i in range(extent):
 */
      __pyx_v_data = (__pyx_v_data + __pyx_v_stride);
    }

    /* "View.MemoryView":1371
 *     cdef Py_ssize_t extent = shape[0]
 * 
 *     if ndim == 1:             # <<<<<<<<<<<<<<
 *         for i in range(extent):
 *             memcpy(data, item, itemsize)
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":1376
 *             data += stride
 *     else:
 *         for i in range(extent):             # <<<<<<<<<<<<<<
 *             _slice_assign_scalar(data, shape + 1, strides + 1,
 *                                 ndim - 1, itemsize, item)
 */
  /*else*/ {
    __pyx_t_2 = __pyx_v_extent;
    for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
      __pyx_v_i = __pyx_t_3;

      /* "View.MemoryView":1377
 *     else:
 *         for i in range(extent):
 *             _slice_assign_scalar(data, shape + 1, strides + 1,             # <<<<<<<<<<<<<<
 *                                 ndim - 1, itemsize, item)
 *             data += stride
 */
      __pyx_memoryview__slice_assign_scalar(__pyx_v_data, (__pyx_v_shape + 1), (__pyx_v_strides + 1), (__pyx_v_ndim - 1), __pyx_v_itemsize, __pyx_v_item);

      /* "View.MemoryView":1379
 *             _slice_assign_scalar(data, shape + 1, strides + 1,
 *                                 ndim - 1, itemsize, item)
 *             data += stride             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_v_data = (__pyx_v_data + __pyx_v_stride);
    }
  }
  __pyx_L3:;

  /* "View.MemoryView":1364
 * 
 * @cname('__pyx_memoryview__slice_assign_scalar')
 * cdef void _slice_assign_scalar(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                               Py_ssize_t *strides, int ndim,
 *                               size_t itemsize, void *item) nogil:
 */

  /* function exit code */
}

static PyObject *__pyx_tp_new_array(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_array_obj *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_array_obj *)o);
  p->mode = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->_format = ((PyObject*)Py_None); Py_INCREF(Py_None);
  if (unlikely(__pyx_array___cinit__(o, a, k) < 0)) {
    Py_DECREF(o); o = 0;
  }
  return o;
}

static void __pyx_tp_dealloc_array(PyObject *o) {
  struct __pyx_array_obj *p = (struct __pyx_array_obj *)o;
  #if PY_VERSION_HEX >= 0x030400a1
  if (unlikely(Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  {
    PyObject *etype, *eval, *etb;
    PyErr_Fetch(&etype, &eval, &etb);
    ++Py_REFCNT(o);
    __pyx_array___dealloc__(o);
    --Py_REFCNT(o);
    PyErr_Restore(etype, eval, etb);
  }
  Py_CLEAR(p->mode);
  Py_CLEAR(p->_format);
  (*Py_TYPE(o)->tp_free)(o);
}
static PyObject *__pyx_sq_item_array(PyObject *o, Py_ssize_t i) {
  PyObject *r;
  PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0;
  r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x);
  Py_DECREF(x);
  return r;
}

static int __pyx_mp_ass_subscript_array(PyObject *o, PyObject *i, PyObject *v) {
  if (v) {
    return __pyx_array___setitem__(o, i, v);
  }
  else {
    PyErr_Format(PyExc_NotImplementedError,
      "Subscript deletion not supported by %.200s", Py_TYPE(o)->tp_name);
    return -1;
  }
}

static PyObject *__pyx_tp_getattro_array(PyObject *o, PyObject *n) {
  PyObject *v = PyObject_GenericGetAttr(o, n);
  if (!v && PyErr_ExceptionMatches(PyExc_AttributeError)) {
    PyErr_Clear();
    v = __pyx_array___getattr__(o, n);
  }
  return v;
}

static PyObject *__pyx_getprop___pyx_array_memview(PyObject *o, CYTHON_UNUSED void *x) {
  return get_memview(o);
}

static PyMethodDef __pyx_methods_array[] = {
  {"__getattr__", (PyCFunction)__pyx_array___getattr__, METH_O|METH_COEXIST, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_array[] = {
  {(char *)"memview", __pyx_getprop___pyx_array_memview, 0, 0, 0},
  {0, 0, 0, 0, 0}
};

static PySequenceMethods __pyx_tp_as_sequence_array = {
  0, /*sq_length*/
  0, /*sq_concat*/
  0, /*sq_repeat*/
  __pyx_sq_item_array, /*sq_item*/
  0, /*sq_slice*/
  0, /*sq_ass_item*/
  0, /*sq_ass_slice*/
  0, /*sq_contains*/
  0, /*sq_inplace_concat*/
  0, /*sq_inplace_repeat*/
};

static PyMappingMethods __pyx_tp_as_mapping_array = {
  0, /*mp_length*/
  __pyx_array___getitem__, /*mp_subscript*/
  __pyx_mp_ass_subscript_array, /*mp_ass_subscript*/
};

static PyBufferProcs __pyx_tp_as_buffer_array = {
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getreadbuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getwritebuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getsegcount*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getcharbuffer*/
  #endif
  __pyx_array_getbuffer, /*bf_getbuffer*/
  0, /*bf_releasebuffer*/
};

static PyTypeObject __pyx_type___pyx_array = {
  PyVarObject_HEAD_INIT(0, 0)
  "_rmsd.array", /*tp_name*/
  sizeof(struct __pyx_array_obj), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_array, /*tp_dealloc*/
  0, /*tp_print*/
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  0, /*tp_repr*/
  0, /*tp_as_number*/
  &__pyx_tp_as_sequence_array, /*tp_as_sequence*/
  &__pyx_tp_as_mapping_array, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  __pyx_tp_getattro_array, /*tp_getattro*/
  0, /*tp_setattro*/
  &__pyx_tp_as_buffer_array, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
  0, /*tp_doc*/
  0, /*tp_traverse*/
  0, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_array, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_array, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  0, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_array, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
};

static PyObject *__pyx_tp_new_Enum(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  struct __pyx_MemviewEnum_obj *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_MemviewEnum_obj *)o);
  p->name = Py_None; Py_INCREF(Py_None);
  return o;
}

static void __pyx_tp_dealloc_Enum(PyObject *o) {
  struct __pyx_MemviewEnum_obj *p = (struct __pyx_MemviewEnum_obj *)o;
  #if PY_VERSION_HEX >= 0x030400a1
  if (unlikely(Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  Py_CLEAR(p->name);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_Enum(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_MemviewEnum_obj *p = (struct __pyx_MemviewEnum_obj *)o;
  if (p->name) {
    e = (*v)(p->name, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_Enum(PyObject *o) {
  PyObject* tmp;
  struct __pyx_MemviewEnum_obj *p = (struct __pyx_MemviewEnum_obj *)o;
  tmp = ((PyObject*)p->name);
  p->name = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  return 0;
}

static PyMethodDef __pyx_methods_Enum[] = {
  {0, 0, 0, 0}
};

static PyTypeObject __pyx_type___pyx_MemviewEnum = {
  PyVarObject_HEAD_INIT(0, 0)
  "_rmsd.Enum", /*tp_name*/
  sizeof(struct __pyx_MemviewEnum_obj), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_Enum, /*tp_dealloc*/
  0, /*tp_print*/
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  __pyx_MemviewEnum___repr__, /*tp_repr*/
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_Enum, /*tp_traverse*/
  __pyx_tp_clear_Enum, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_Enum, /*tp_methods*/
  0, /*tp_members*/
  0, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_MemviewEnum___init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_Enum, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
};
static struct __pyx_vtabstruct_memoryview __pyx_vtable_memoryview;

static PyObject *__pyx_tp_new_memoryview(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_memoryview_obj *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_memoryview_obj *)o);
  p->__pyx_vtab = __pyx_vtabptr_memoryview;
  p->obj = Py_None; Py_INCREF(Py_None);
  p->_size = Py_None; Py_INCREF(Py_None);
  p->_array_interface = Py_None; Py_INCREF(Py_None);
  p->view.obj = NULL;
  if (unlikely(__pyx_memoryview___cinit__(o, a, k) < 0)) {
    Py_DECREF(o); o = 0;
  }
  return o;
}

static void __pyx_tp_dealloc_memoryview(PyObject *o) {
  struct __pyx_memoryview_obj *p = (struct __pyx_memoryview_obj *)o;
  #if PY_VERSION_HEX >= 0x030400a1
  if (unlikely(Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  {
    PyObject *etype, *eval, *etb;
    PyErr_Fetch(&etype, &eval, &etb);
    ++Py_REFCNT(o);
    __pyx_memoryview___dealloc__(o);
    --Py_REFCNT(o);
    PyErr_Restore(etype, eval, etb);
  }
  Py_CLEAR(p->obj);
  Py_CLEAR(p->_size);
  Py_CLEAR(p->_array_interface);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_memoryview(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_memoryview_obj *p = (struct __pyx_memoryview_obj *)o;
  if (p->obj) {
    e = (*v)(p->obj, a); if (e) return e;
  }
  if (p->_size) {
    e = (*v)(p->_size, a); if (e) return e;
  }
  if (p->_array_interface) {
    e = (*v)(p->_array_interface, a); if (e) return e;
  }
  if (p->view.obj) {
    e = (*v)(p->view.obj, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_memoryview(PyObject *o) {
  PyObject* tmp;
  struct __pyx_memoryview_obj *p = (struct __pyx_memoryview_obj *)o;
  tmp = ((PyObject*)p->obj);
  p->obj = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->_size);
  p->_size = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->_array_interface);
  p->_array_interface = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  Py_CLEAR(p->view.obj);
  return 0;
}
static PyObject *__pyx_sq_item_memoryview(PyObject *o, Py_ssize_t i) {
  PyObject *r;
  PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0;
  r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x);
  Py_DECREF(x);
  return r;
}

static int __pyx_mp_ass_subscript_memoryview(PyObject *o, PyObject *i, PyObject *v) {
  if (v) {
    return __pyx_memoryview___setitem__(o, i, v);
  }
  else {
    PyErr_Format(PyExc_NotImplementedError,
      "Subscript deletion not supported by %.200s", Py_TYPE(o)->tp_name);
    return -1;
  }
}

static PyObject *__pyx_getprop___pyx_memoryview_T(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_memoryview_transpose(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_base(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_memoryview__get__base(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_shape(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_memoryview_get_shape(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_strides(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_memoryview_get_strides(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_suboffsets(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_memoryview_get_suboffsets(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_ndim(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_memoryview_get_ndim(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_itemsize(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_memoryview_get_itemsize(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_nbytes(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_memoryview_get_nbytes(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_size(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_memoryview_get_size(o);
}

static PyMethodDef __pyx_methods_memoryview[] = {
  {"is_c_contig", (PyCFunction)__pyx_memoryview_is_c_contig, METH_NOARGS, 0},
  {"is_f_contig", (PyCFunction)__pyx_memoryview_is_f_contig, METH_NOARGS, 0},
  {"copy", (PyCFunction)__pyx_memoryview_copy, METH_NOARGS, 0},
  {"copy_fortran", (PyCFunction)__pyx_memoryview_copy_fortran, METH_NOARGS, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_memoryview[] = {
  {(char *)"T", __pyx_getprop___pyx_memoryview_T, 0, 0, 0},
  {(char *)"base", __pyx_getprop___pyx_memoryview_base, 0, 0, 0},
  {(char *)"shape", __pyx_getprop___pyx_memoryview_shape, 0, 0, 0},
  {(char *)"strides", __pyx_getprop___pyx_memoryview_strides, 0, 0, 0},
  {(char *)"suboffsets", __pyx_getprop___pyx_memoryview_suboffsets, 0, 0, 0},
  {(char *)"ndim", __pyx_getprop___pyx_memoryview_ndim, 0, 0, 0},
  {(char *)"itemsize", __pyx_getprop___pyx_memoryview_itemsize, 0, 0, 0},
  {(char *)"nbytes", __pyx_getprop___pyx_memoryview_nbytes, 0, 0, 0},
  {(char *)"size", __pyx_getprop___pyx_memoryview_size, 0, 0, 0},
  {0, 0, 0, 0, 0}
};

static PySequenceMethods __pyx_tp_as_sequence_memoryview = {
  __pyx_memoryview___len__, /*sq_length*/
  0, /*sq_concat*/
  0, /*sq_repeat*/
  __pyx_sq_item_memoryview, /*sq_item*/
  0, /*sq_slice*/
  0, /*sq_ass_item*/
  0, /*sq_ass_slice*/
  0, /*sq_contains*/
  0, /*sq_inplace_concat*/
  0, /*sq_inplace_repeat*/
};

static PyMappingMethods __pyx_tp_as_mapping_memoryview = {
  __pyx_memoryview___len__, /*mp_length*/
  __pyx_memoryview___getitem__, /*mp_subscript*/
  __pyx_mp_ass_subscript_memoryview, /*mp_ass_subscript*/
};

static PyBufferProcs __pyx_tp_as_buffer_memoryview = {
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getreadbuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getwritebuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getsegcount*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getcharbuffer*/
  #endif
  __pyx_memoryview_getbuffer, /*bf_getbuffer*/
  0, /*bf_releasebuffer*/
};

static PyTypeObject __pyx_type___pyx_memoryview = {
  PyVarObject_HEAD_INIT(0, 0)
  "_rmsd.memoryview", /*tp_name*/
  sizeof(struct __pyx_memoryview_obj), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_memoryview, /*tp_dealloc*/
  0, /*tp_print*/
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  __pyx_memoryview___repr__, /*tp_repr*/
  0, /*tp_as_number*/
  &__pyx_tp_as_sequence_memoryview, /*tp_as_sequence*/
  &__pyx_tp_as_mapping_memoryview, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  __pyx_memoryview___str__, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  &__pyx_tp_as_buffer_memoryview, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_memoryview, /*tp_traverse*/
  __pyx_tp_clear_memoryview, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_memoryview, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_memoryview, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  0, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_memoryview, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
};
static struct __pyx_vtabstruct__memoryviewslice __pyx_vtable__memoryviewslice;

static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_memoryviewslice_obj *p;
  PyObject *o = __pyx_tp_new_memoryview(t, a, k);
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_memoryviewslice_obj *)o);
  p->__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_memoryview*)__pyx_vtabptr__memoryviewslice;
  p->from_object = Py_None; Py_INCREF(Py_None);
  p->from_slice.memview = NULL;
  return o;
}

static void __pyx_tp_dealloc__memoryviewslice(PyObject *o) {
  struct __pyx_memoryviewslice_obj *p = (struct __pyx_memoryviewslice_obj *)o;
  #if PY_VERSION_HEX >= 0x030400a1
  if (unlikely(Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  {
    PyObject *etype, *eval, *etb;
    PyErr_Fetch(&etype, &eval, &etb);
    ++Py_REFCNT(o);
    __pyx_memoryviewslice___dealloc__(o);
    --Py_REFCNT(o);
    PyErr_Restore(etype, eval, etb);
  }
  Py_CLEAR(p->from_object);
  PyObject_GC_Track(o);
  __pyx_tp_dealloc_memoryview(o);
}

static int __pyx_tp_traverse__memoryviewslice(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_memoryviewslice_obj *p = (struct __pyx_memoryviewslice_obj *)o;
  e = __pyx_tp_traverse_memoryview(o, v, a); if (e) return e;
  if (p->from_object) {
    e = (*v)(p->from_object, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear__memoryviewslice(PyObject *o) {
  PyObject* tmp;
  struct __pyx_memoryviewslice_obj *p = (struct __pyx_memoryviewslice_obj *)o;
  __pyx_tp_clear_memoryview(o);
  tmp = ((PyObject*)p->from_object);
  p->from_object = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  __PYX_XDEC_MEMVIEW(&p->from_slice, 1);
  return 0;
}

static PyObject *__pyx_getprop___pyx_memoryviewslice_base(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_memoryviewslice__get__base(o);
}

static PyMethodDef __pyx_methods__memoryviewslice[] = {
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets__memoryviewslice[] = {
  {(char *)"base", __pyx_getprop___pyx_memoryviewslice_base, 0, 0, 0},
  {0, 0, 0, 0, 0}
};

static PyTypeObject __pyx_type___pyx_memoryviewslice = {
  PyVarObject_HEAD_INIT(0, 0)
  "_rmsd._memoryviewslice", /*tp_name*/
  sizeof(struct __pyx_memoryviewslice_obj), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc__memoryviewslice, /*tp_dealloc*/
  0, /*tp_print*/
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY
  __pyx_memoryview___repr__, /*tp_repr*/
  #else
  0, /*tp_repr*/
  #endif
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  #if CYTHON_COMPILING_IN_PYPY
  __pyx_memoryview___str__, /*tp_str*/
  #else
  0, /*tp_str*/
  #endif
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  "Internal class for passing memoryview slices to Python", /*tp_doc*/
  __pyx_tp_traverse__memoryviewslice, /*tp_traverse*/
  __pyx_tp_clear__memoryviewslice, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods__memoryviewslice, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets__memoryviewslice, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  0, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new__memoryviewslice, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
};

static PyMethodDef __pyx_methods[] = {
  {0, 0, 0, 0}
};

#if PY_MAJOR_VERSION >= 3
static struct PyModuleDef __pyx_moduledef = {
  #if PY_VERSION_HEX < 0x03020000
    { PyObject_HEAD_INIT(NULL) NULL, 0, NULL },
  #else
    PyModuleDef_HEAD_INIT,
  #endif
    "_rmsd",
    0, /* m_doc */
    -1, /* m_size */
    __pyx_methods /* m_methods */,
    NULL, /* m_reload */
    NULL, /* m_traverse */
    NULL, /* m_clear */
    NULL /* m_free */
};
#endif

static __Pyx_StringTabEntry __pyx_string_tab[] = {
  {&__pyx_n_s_ASCII, __pyx_k_ASCII, sizeof(__pyx_k_ASCII), 0, 0, 1, 1},
  {&__pyx_kp_s_Buffer_view_does_not_expose_stri, __pyx_k_Buffer_view_does_not_expose_stri, sizeof(__pyx_k_Buffer_view_does_not_expose_stri), 0, 0, 1, 0},
  {&__pyx_n_s_C, __pyx_k_C, sizeof(__pyx_k_C), 0, 0, 1, 1},
  {&__pyx_kp_s_Can_only_create_a_buffer_that_is, __pyx_k_Can_only_create_a_buffer_that_is, sizeof(__pyx_k_Can_only_create_a_buffer_that_is), 0, 0, 1, 0},
  {&__pyx_kp_s_Cannot_calculate_RMSD_of_frame_d, __pyx_k_Cannot_calculate_RMSD_of_frame_d, sizeof(__pyx_k_Cannot_calculate_RMSD_of_frame_d), 0, 0, 1, 0},
  {&__pyx_kp_s_Cannot_calculate_RMSD_of_frame_d_2, __pyx_k_Cannot_calculate_RMSD_of_frame_d_2, sizeof(__pyx_k_Cannot_calculate_RMSD_of_frame_d_2), 0, 0, 1, 0},
  {&__pyx_kp_s_Cannot_index_with_type_s, __pyx_k_Cannot_index_with_type_s, sizeof(__pyx_k_Cannot_index_with_type_s), 0, 0, 1, 0},
  {&__pyx_n_s_Ellipsis, __pyx_k_Ellipsis, sizeof(__pyx_k_Ellipsis), 0, 0, 1, 1},
  {&__pyx_kp_s_Empty_shape_tuple_for_cython_arr, __pyx_k_Empty_shape_tuple_for_cython_arr, sizeof(__pyx_k_Empty_shape_tuple_for_cython_arr), 0, 0, 1, 0},
  {&__pyx_n_s_IndexError, __pyx_k_IndexError, sizeof(__pyx_k_IndexError), 0, 0, 1, 1},
  {&__pyx_kp_s_Indirect_dimensions_not_supporte, __pyx_k_Indirect_dimensions_not_supporte, sizeof(__pyx_k_Indirect_dimensions_not_supporte), 0, 0, 1, 0},
  {&__pyx_kp_s_Input_arrays_must_have_middle_di, __pyx_k_Input_arrays_must_have_middle_di, sizeof(__pyx_k_Input_arrays_must_have_middle_di), 0, 0, 1, 0},
  {&__pyx_kp_s_Input_arrays_must_have_same_numb, __pyx_k_Input_arrays_must_have_same_numb, sizeof(__pyx_k_Input_arrays_must_have_same_numb), 0, 0, 1, 0},
  {&__pyx_kp_s_Input_trajectories_must_have_sam, __pyx_k_Input_trajectories_must_have_sam, sizeof(__pyx_k_Input_trajectories_must_have_sam), 0, 0, 1, 0},
  {&__pyx_kp_s_Invalid_mode_expected_c_or_fortr, __pyx_k_Invalid_mode_expected_c_or_fortr, sizeof(__pyx_k_Invalid_mode_expected_c_or_fortr), 0, 0, 1, 0},
  {&__pyx_kp_s_Invalid_shape_in_axis_d_d, __pyx_k_Invalid_shape_in_axis_d_d, sizeof(__pyx_k_Invalid_shape_in_axis_d_d), 0, 0, 1, 0},
  {&__pyx_n_s_MemoryError, __pyx_k_MemoryError, sizeof(__pyx_k_MemoryError), 0, 0, 1, 1},
  {&__pyx_kp_s_MemoryView_of_r_at_0x_x, __pyx_k_MemoryView_of_r_at_0x_x, sizeof(__pyx_k_MemoryView_of_r_at_0x_x), 0, 0, 1, 0},
  {&__pyx_kp_s_MemoryView_of_r_object, __pyx_k_MemoryView_of_r_object, sizeof(__pyx_k_MemoryView_of_r_object), 0, 0, 1, 0},
  {&__pyx_n_b_O, __pyx_k_O, sizeof(__pyx_k_O), 0, 0, 0, 1},
  {&__pyx_kp_s_Out_of_bounds_on_buffer_access_a, __pyx_k_Out_of_bounds_on_buffer_access_a, sizeof(__pyx_k_Out_of_bounds_on_buffer_access_a), 0, 0, 1, 0},
  {&__pyx_n_s_TypeError, __pyx_k_TypeError, sizeof(__pyx_k_TypeError), 0, 0, 1, 1},
  {&__pyx_kp_s_Unable_to_convert_item_to_object, __pyx_k_Unable_to_convert_item_to_object, sizeof(__pyx_k_Unable_to_convert_item_to_object), 0, 0, 1, 0},
  {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1},
  {&__pyx_n_s_all, __pyx_k_all, sizeof(__pyx_k_all), 0, 0, 1, 1},
  {&__pyx_n_s_allocate_buffer, __pyx_k_allocate_buffer, sizeof(__pyx_k_allocate_buffer), 0, 0, 1, 1},
  {&__pyx_n_s_array, __pyx_k_array, sizeof(__pyx_k_array), 0, 0, 1, 1},
  {&__pyx_n_s_asarray, __pyx_k_asarray, sizeof(__pyx_k_asarray), 0, 0, 1, 1},
  {&__pyx_n_s_atom_indices, __pyx_k_atom_indices, sizeof(__pyx_k_atom_indices), 0, 0, 1, 1},
  {&__pyx_kp_s_atom_indices_must_be_valid_posit, __pyx_k_atom_indices_must_be_valid_posit, sizeof(__pyx_k_atom_indices_must_be_valid_posit), 0, 0, 1, 0},
  {&__pyx_n_s_base, __pyx_k_base, sizeof(__pyx_k_base), 0, 0, 1, 1},
  {&__pyx_n_s_c, __pyx_k_c, sizeof(__pyx_k_c), 0, 0, 1, 1},
  {&__pyx_n_u_c, __pyx_k_c, sizeof(__pyx_k_c), 0, 1, 0, 1},
  {&__pyx_n_s_center_inplace_atom_major, __pyx_k_center_inplace_atom_major, sizeof(__pyx_k_center_inplace_atom_major), 0, 0, 1, 1},
  {&__pyx_n_s_class, __pyx_k_class, sizeof(__pyx_k_class), 0, 0, 1, 1},
  {&__pyx_kp_s_contiguous_and_direct, __pyx_k_contiguous_and_direct, sizeof(__pyx_k_contiguous_and_direct), 0, 0, 1, 0},
  {&__pyx_kp_s_contiguous_and_indirect, __pyx_k_contiguous_and_indirect, sizeof(__pyx_k_contiguous_and_indirect), 0, 0, 1, 0},
  {&__pyx_n_s_copy, __pyx_k_copy, sizeof(__pyx_k_copy), 0, 0, 1, 1},
  {&__pyx_n_s_distances, __pyx_k_distances, sizeof(__pyx_k_distances), 0, 0, 1, 1},
  {&__pyx_n_s_dtype, __pyx_k_dtype, sizeof(__pyx_k_dtype), 0, 0, 1, 1},
  {&__pyx_n_s_dtype_is_object, __pyx_k_dtype_is_object, sizeof(__pyx_k_dtype_is_object), 0, 0, 1, 1},
  {&__pyx_n_s_empty, __pyx_k_empty, sizeof(__pyx_k_empty), 0, 0, 1, 1},
  {&__pyx_n_s_encode, __pyx_k_encode, sizeof(__pyx_k_encode), 0, 0, 1, 1},
  {&__pyx_n_s_ensure_type, __pyx_k_ensure_type, sizeof(__pyx_k_ensure_type), 0, 0, 1, 1},
  {&__pyx_n_s_enumerate, __pyx_k_enumerate, sizeof(__pyx_k_enumerate), 0, 0, 1, 1},
  {&__pyx_n_s_error, __pyx_k_error, sizeof(__pyx_k_error), 0, 0, 1, 1},
  {&__pyx_n_s_flags, __pyx_k_flags, sizeof(__pyx_k_flags), 0, 0, 1, 1},
  {&__pyx_n_s_float32, __pyx_k_float32, sizeof(__pyx_k_float32), 0, 0, 1, 1},
  {&__pyx_n_s_format, __pyx_k_format, sizeof(__pyx_k_format), 0, 0, 1, 1},
  {&__pyx_n_s_fortran, __pyx_k_fortran, sizeof(__pyx_k_fortran), 0, 0, 1, 1},
  {&__pyx_n_u_fortran, __pyx_k_fortran, sizeof(__pyx_k_fortran), 0, 1, 0, 1},
  {&__pyx_n_s_frame, __pyx_k_frame, sizeof(__pyx_k_frame), 0, 0, 1, 1},
  {&__pyx_n_s_g1, __pyx_k_g1, sizeof(__pyx_k_g1), 0, 0, 1, 1},
  {&__pyx_n_s_g2, __pyx_k_g2, sizeof(__pyx_k_g2), 0, 0, 1, 1},
  {&__pyx_n_s_g_align1, __pyx_k_g_align1, sizeof(__pyx_k_g_align1), 0, 0, 1, 1},
  {&__pyx_n_s_g_align2, __pyx_k_g_align2, sizeof(__pyx_k_g_align2), 0, 0, 1, 1},
  {&__pyx_n_s_g_mobile, __pyx_k_g_mobile, sizeof(__pyx_k_g_mobile), 0, 0, 1, 1},
  {&__pyx_n_s_g_target, __pyx_k_g_target, sizeof(__pyx_k_g_target), 0, 0, 1, 1},
  {&__pyx_n_s_getMultipleAlignDisplaceRMSDs_at, __pyx_k_getMultipleAlignDisplaceRMSDs_at, sizeof(__pyx_k_getMultipleAlignDisplaceRMSDs_at), 0, 0, 1, 1},
  {&__pyx_n_s_getMultipleRMSDs_atom_major, __pyx_k_getMultipleRMSDs_atom_major, sizeof(__pyx_k_getMultipleRMSDs_atom_major), 0, 0, 1, 1},
  {&__pyx_n_s_getMultipleRMSDs_axis_major, __pyx_k_getMultipleRMSDs_axis_major, sizeof(__pyx_k_getMultipleRMSDs_axis_major), 0, 0, 1, 1},
  {&__pyx_kp_s_got_differing_extents_in_dimensi, __pyx_k_got_differing_extents_in_dimensi, sizeof(__pyx_k_got_differing_extents_in_dimensi), 0, 0, 1, 0},
  {&__pyx_kp_s_home_harrigan_source_mdtraj_mdt, __pyx_k_home_harrigan_source_mdtraj_mdt, sizeof(__pyx_k_home_harrigan_source_mdtraj_mdt), 0, 0, 1, 0},
  {&__pyx_n_s_i, __pyx_k_i, sizeof(__pyx_k_i), 0, 0, 1, 1},
  {&__pyx_n_s_id, __pyx_k_id, sizeof(__pyx_k_id), 0, 0, 1, 1},
  {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1},
  {&__pyx_n_s_int, __pyx_k_int, sizeof(__pyx_k_int), 0, 0, 1, 1},
  {&__pyx_n_s_itemsize, __pyx_k_itemsize, sizeof(__pyx_k_itemsize), 0, 0, 1, 1},
  {&__pyx_kp_s_itemsize_0_for_cython_array, __pyx_k_itemsize_0_for_cython_array, sizeof(__pyx_k_itemsize_0_for_cython_array), 0, 0, 1, 0},
  {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1},
  {&__pyx_n_s_mdtraj_utils, __pyx_k_mdtraj_utils, sizeof(__pyx_k_mdtraj_utils), 0, 0, 1, 1},
  {&__pyx_n_s_memview, __pyx_k_memview, sizeof(__pyx_k_memview), 0, 0, 1, 1},
  {&__pyx_n_s_mode, __pyx_k_mode, sizeof(__pyx_k_mode), 0, 0, 1, 1},
  {&__pyx_n_s_msd, __pyx_k_msd, sizeof(__pyx_k_msd), 0, 0, 1, 1},
  {&__pyx_n_s_n_align_atoms_padded, __pyx_k_n_align_atoms_padded, sizeof(__pyx_k_n_align_atoms_padded), 0, 0, 1, 1},
  {&__pyx_n_s_n_atoms, __pyx_k_n_atoms, sizeof(__pyx_k_n_atoms), 0, 0, 1, 1},
  {&__pyx_n_s_n_atoms_align, __pyx_k_n_atoms_align, sizeof(__pyx_k_n_atoms_align), 0, 0, 1, 1},
  {&__pyx_n_s_n_atoms_displ, __pyx_k_n_atoms_displ, sizeof(__pyx_k_n_atoms_displ), 0, 0, 1, 1},
  {&__pyx_n_s_n_atoms_displace, __pyx_k_n_atoms_displace, sizeof(__pyx_k_n_atoms_displace), 0, 0, 1, 1},
  {&__pyx_n_s_n_displ_atoms_padded, __pyx_k_n_displ_atoms_padded, sizeof(__pyx_k_n_displ_atoms_padded), 0, 0, 1, 1},
  {&__pyx_n_s_n_frames, __pyx_k_n_frames, sizeof(__pyx_k_n_frames), 0, 0, 1, 1},
  {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1},
  {&__pyx_n_s_name_2, __pyx_k_name_2, sizeof(__pyx_k_name_2), 0, 0, 1, 1},
  {&__pyx_n_s_ndim, __pyx_k_ndim, sizeof(__pyx_k_ndim), 0, 0, 1, 1},
  {&__pyx_n_s_np, __pyx_k_np, sizeof(__pyx_k_np), 0, 0, 1, 1},
  {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1},
  {&__pyx_n_s_obj, __pyx_k_obj, sizeof(__pyx_k_obj), 0, 0, 1, 1},
  {&__pyx_n_s_order, __pyx_k_order, sizeof(__pyx_k_order), 0, 0, 1, 1},
  {&__pyx_n_s_pack, __pyx_k_pack, sizeof(__pyx_k_pack), 0, 0, 1, 1},
  {&__pyx_n_s_parallel, __pyx_k_parallel, sizeof(__pyx_k_parallel), 0, 0, 1, 1},
  {&__pyx_n_s_precentered, __pyx_k_precentered, sizeof(__pyx_k_precentered), 0, 0, 1, 1},
  {&__pyx_n_s_pyx_getbuffer, __pyx_k_pyx_getbuffer, sizeof(__pyx_k_pyx_getbuffer), 0, 0, 1, 1},
  {&__pyx_n_s_pyx_vtable, __pyx_k_pyx_vtable, sizeof(__pyx_k_pyx_vtable), 0, 0, 1, 1},
  {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1},
  {&__pyx_n_s_ref_atom_indices, __pyx_k_ref_atom_indices, sizeof(__pyx_k_ref_atom_indices), 0, 0, 1, 1},
  {&__pyx_kp_s_ref_atom_indices_must_be_valid_p, __pyx_k_ref_atom_indices_must_be_valid_p, sizeof(__pyx_k_ref_atom_indices_must_be_valid_p), 0, 0, 1, 0},
  {&__pyx_n_s_ref_g, __pyx_k_ref_g, sizeof(__pyx_k_ref_g), 0, 0, 1, 1},
  {&__pyx_n_s_ref_xyz_frame, __pyx_k_ref_xyz_frame, sizeof(__pyx_k_ref_xyz_frame), 0, 0, 1, 1},
  {&__pyx_n_s_reference, __pyx_k_reference, sizeof(__pyx_k_reference), 0, 0, 1, 1},
  {&__pyx_n_s_rmsd, __pyx_k_rmsd, sizeof(__pyx_k_rmsd), 0, 0, 1, 1},
  {&__pyx_n_s_rmsd_2, __pyx_k_rmsd_2, sizeof(__pyx_k_rmsd_2), 0, 0, 1, 1},
  {&__pyx_kp_u_rmsd_line_59, __pyx_k_rmsd_line_59, sizeof(__pyx_k_rmsd_line_59), 0, 1, 0, 0},
  {&__pyx_kp_u_rmsd_target_reference_frame_0_at, __pyx_k_rmsd_target_reference_frame_0_at, sizeof(__pyx_k_rmsd_target_reference_frame_0_at), 0, 1, 0, 0},
  {&__pyx_n_s_rmsd_traces, __pyx_k_rmsd_traces, sizeof(__pyx_k_rmsd_traces), 0, 0, 1, 1},
  {&__pyx_n_s_rot, __pyx_k_rot, sizeof(__pyx_k_rot), 0, 0, 1, 1},
  {&__pyx_n_s_shape, __pyx_k_shape, sizeof(__pyx_k_shape), 0, 0, 1, 1},
  {&__pyx_n_s_size, __pyx_k_size, sizeof(__pyx_k_size), 0, 0, 1, 1},
  {&__pyx_n_s_start, __pyx_k_start, sizeof(__pyx_k_start), 0, 0, 1, 1},
  {&__pyx_n_s_step, __pyx_k_step, sizeof(__pyx_k_step), 0, 0, 1, 1},
  {&__pyx_n_s_stop, __pyx_k_stop, sizeof(__pyx_k_stop), 0, 0, 1, 1},
  {&__pyx_kp_s_strided_and_direct, __pyx_k_strided_and_direct, sizeof(__pyx_k_strided_and_direct), 0, 0, 1, 0},
  {&__pyx_kp_s_strided_and_direct_or_indirect, __pyx_k_strided_and_direct_or_indirect, sizeof(__pyx_k_strided_and_direct_or_indirect), 0, 0, 1, 0},
  {&__pyx_kp_s_strided_and_indirect, __pyx_k_strided_and_indirect, sizeof(__pyx_k_strided_and_indirect), 0, 0, 1, 0},
  {&__pyx_n_s_struct, __pyx_k_struct, sizeof(__pyx_k_struct), 0, 0, 1, 1},
  {&__pyx_n_s_superpose_atom_major, __pyx_k_superpose_atom_major, sizeof(__pyx_k_superpose_atom_major), 0, 0, 1, 1},
  {&__pyx_n_s_target, __pyx_k_target, sizeof(__pyx_k_target), 0, 0, 1, 1},
  {&__pyx_n_s_target_frame, __pyx_k_target_frame, sizeof(__pyx_k_target_frame), 0, 0, 1, 1},
  {&__pyx_n_s_target_g, __pyx_k_target_g, sizeof(__pyx_k_target_g), 0, 0, 1, 1},
  {&__pyx_n_s_target_n_frames, __pyx_k_target_n_frames, sizeof(__pyx_k_target_n_frames), 0, 0, 1, 1},
  {&__pyx_n_s_target_xyz, __pyx_k_target_xyz, sizeof(__pyx_k_target_xyz), 0, 0, 1, 1},
  {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1},
  {&__pyx_n_s_traces, __pyx_k_traces, sizeof(__pyx_k_traces), 0, 0, 1, 1},
  {&__pyx_kp_s_unable_to_allocate_array_data, __pyx_k_unable_to_allocate_array_data, sizeof(__pyx_k_unable_to_allocate_array_data), 0, 0, 1, 0},
  {&__pyx_kp_s_unable_to_allocate_shape_and_str, __pyx_k_unable_to_allocate_shape_and_str, sizeof(__pyx_k_unable_to_allocate_shape_and_str), 0, 0, 1, 0},
  {&__pyx_n_s_unpack, __pyx_k_unpack, sizeof(__pyx_k_unpack), 0, 0, 1, 1},
  {&__pyx_n_s_xyz, __pyx_k_xyz, sizeof(__pyx_k_xyz), 0, 0, 1, 1},
  {&__pyx_n_s_xyz1, __pyx_k_xyz1, sizeof(__pyx_k_xyz1), 0, 0, 1, 1},
  {&__pyx_n_s_xyz2, __pyx_k_xyz2, sizeof(__pyx_k_xyz2), 0, 0, 1, 1},
  {&__pyx_n_s_xyz_align1, __pyx_k_xyz_align1, sizeof(__pyx_k_xyz_align1), 0, 0, 1, 1},
  {&__pyx_kp_s_xyz_align1_and_xyz_displ1_must_c, __pyx_k_xyz_align1_and_xyz_displ1_must_c, sizeof(__pyx_k_xyz_align1_and_xyz_displ1_must_c), 0, 0, 1, 0},
  {&__pyx_n_s_xyz_align2, __pyx_k_xyz_align2, sizeof(__pyx_k_xyz_align2), 0, 0, 1, 1},
  {&__pyx_kp_s_xyz_align2_and_xyz_displ2_must_c, __pyx_k_xyz_align2_and_xyz_displ2_must_c, sizeof(__pyx_k_xyz_align2_and_xyz_displ2_must_c), 0, 0, 1, 0},
  {&__pyx_n_s_xyz_align_mobile, __pyx_k_xyz_align_mobile, sizeof(__pyx_k_xyz_align_mobile), 0, 0, 1, 1},
  {&__pyx_kp_s_xyz_align_mobile_and_xyz_displac, __pyx_k_xyz_align_mobile_and_xyz_displac, sizeof(__pyx_k_xyz_align_mobile_and_xyz_displac), 0, 0, 1, 0},
  {&__pyx_n_s_xyz_align_target, __pyx_k_xyz_align_target, sizeof(__pyx_k_xyz_align_target), 0, 0, 1, 1},
  {&__pyx_n_s_xyz_displ1, __pyx_k_xyz_displ1, sizeof(__pyx_k_xyz_displ1), 0, 0, 1, 1},
  {&__pyx_n_s_xyz_displ2, __pyx_k_xyz_displ2, sizeof(__pyx_k_xyz_displ2), 0, 0, 1, 1},
  {&__pyx_n_s_xyz_displace_mobile, __pyx_k_xyz_displace_mobile, sizeof(__pyx_k_xyz_displace_mobile), 0, 0, 1, 1},
  {&__pyx_n_s_zeros, __pyx_k_zeros, sizeof(__pyx_k_zeros), 0, 0, 1, 1},
  {0, 0, 0, 0, 0, 0, 0}
};
static int __Pyx_InitCachedBuiltins(void) {
  __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 135; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_n_s_range); if (!__pyx_builtin_range) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 187; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_builtin_MemoryError = __Pyx_GetBuiltinName(__pyx_n_s_MemoryError); if (!__pyx_builtin_MemoryError) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 144; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_builtin_enumerate = __Pyx_GetBuiltinName(__pyx_n_s_enumerate); if (!__pyx_builtin_enumerate) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 147; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_builtin_Ellipsis = __Pyx_GetBuiltinName(__pyx_n_s_Ellipsis); if (!__pyx_builtin_Ellipsis) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 359; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_builtin_TypeError = __Pyx_GetBuiltinName(__pyx_n_s_TypeError); if (!__pyx_builtin_TypeError) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_builtin_id = __Pyx_GetBuiltinName(__pyx_n_s_id); if (!__pyx_builtin_id) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 571; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_builtin_IndexError = __Pyx_GetBuiltinName(__pyx_n_s_IndexError); if (!__pyx_builtin_IndexError) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 790; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  return 0;
  __pyx_L1_error:;
  return -1;
}

static int __Pyx_InitCachedConstants(void) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0);

  /* "_rmsd.pyx":129
 *     # import time
 *     if atom_indices is None:
 *         atom_indices = slice(None)             # <<<<<<<<<<<<<<
 *     else:
 *         atom_indices = ensure_type(np.asarray(atom_indices), dtype=np.int, ndim=1, name='atom_indices')
 */
  __pyx_slice_ = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice_)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 129; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_slice_);
  __Pyx_GIVEREF(__pyx_slice_);

  /* "_rmsd.pyx":135
 *                               (atom_indices < target.xyz.shape[1]) *
 *                               (atom_indices < reference.xyz.shape[1])):
 *             raise ValueError("atom_indices must be valid positive indices")             # <<<<<<<<<<<<<<
 * 
 *     if ref_atom_indices is None:
 */
  __pyx_tuple__2 = PyTuple_Pack(1, __pyx_kp_s_atom_indices_must_be_valid_posit); if (unlikely(!__pyx_tuple__2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 135; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__2);
  __Pyx_GIVEREF(__pyx_tuple__2);

  /* "_rmsd.pyx":145
 *                               (ref_atom_indices < target.xyz.shape[1]) *
 *                               (ref_atom_indices < reference.xyz.shape[1])):
 *             raise ValueError("ref_atom_indices must be valid positive indices")             # <<<<<<<<<<<<<<
 * 
 *     # Error checks
 */
  __pyx_tuple__3 = PyTuple_Pack(1, __pyx_kp_s_ref_atom_indices_must_be_valid_p); if (unlikely(!__pyx_tuple__3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__3);
  __Pyx_GIVEREF(__pyx_tuple__3);

  /* "_rmsd.pyx":163
 *     cdef float[:] target_g
 *     cdef int target_n_frames = target.xyz.shape[0]
 *     cdef int n_atoms = target.xyz.shape[1] if np.all(atom_indices == slice(None)) else len(atom_indices)             # <<<<<<<<<<<<<<
 * 
 *     # make sure *every* frame in target_xyz is in proper c-major order
 */
  __pyx_slice__4 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__4)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 163; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_slice__4);
  __Pyx_GIVEREF(__pyx_slice__4);

  /* "_rmsd.pyx":166
 * 
 *     # make sure *every* frame in target_xyz is in proper c-major order
 *     target_xyz = np.asarray(target.xyz[:, atom_indices, :], order='C', dtype=np.float32)             # <<<<<<<<<<<<<<
 *     # only extract the `frame`-th conformation from ref_xyz
 *     ref_xyz_frame = np.asarray(reference.xyz[frame, ref_atom_indices, :], order='C', dtype=np.float32)
 */
  __pyx_slice__5 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_slice__5);
  __Pyx_GIVEREF(__pyx_slice__5);
  __pyx_slice__6 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_slice__6);
  __Pyx_GIVEREF(__pyx_slice__6);

  /* "_rmsd.pyx":168
 *     target_xyz = np.asarray(target.xyz[:, atom_indices, :], order='C', dtype=np.float32)
 *     # only extract the `frame`-th conformation from ref_xyz
 *     ref_xyz_frame = np.asarray(reference.xyz[frame, ref_atom_indices, :], order='C', dtype=np.float32)             # <<<<<<<<<<<<<<
 * 
 *     # t0 = time.time()
 */
  __pyx_slice__7 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 168; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_slice__7);
  __Pyx_GIVEREF(__pyx_slice__7);

  /* "_rmsd.pyx":171
 * 
 *     # t0 = time.time()
 *     if precentered and (reference._rmsd_traces is not None) and (target._rmsd_traces is not None) and atom_indices == slice(None):             # <<<<<<<<<<<<<<
 *         target_g = np.asarray(target._rmsd_traces, order='C', dtype=np.float32)
 *         ref_g = reference._rmsd_traces[frame]
 */
  __pyx_slice__8 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 171; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_slice__8);
  __Pyx_GIVEREF(__pyx_slice__8);

  /* "_rmsd.pyx":366
 *                          xyz_align_mobile.shape[1]))
 *     if not xyz_align_mobile.shape[0] == xyz_displace_mobile.shape[0]:
 *         raise ValueError("xyz_align_mobile and xyz_displace_mobile must contain the same number of frames")             # <<<<<<<<<<<<<<
 * 
 *     # we could get away with using less memory here: we only need 1 rotation
 */
  __pyx_tuple__9 = PyTuple_Pack(1, __pyx_kp_s_xyz_align_mobile_and_xyz_displac); if (unlikely(!__pyx_tuple__9)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 366; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__9);
  __Pyx_GIVEREF(__pyx_tuple__9);

  /* "_rmsd.pyx":441
 *                          "found %d and %d." % (xyz_displ1.shape[1], xyz_displ2.shape[1]))
 *     if not xyz_align1.shape[0] == xyz_displ1.shape[0]:
 *         raise ValueError("xyz_align1 and xyz_displ1 must contain the same number of frames")             # <<<<<<<<<<<<<<
 *     if not xyz_align2.shape[0] == xyz_displ2.shape[0]:
 *         raise ValueError("xyz_align2 and xyz_displ2 must contain the same number of frames")
 */
  __pyx_tuple__10 = PyTuple_Pack(1, __pyx_kp_s_xyz_align1_and_xyz_displ1_must_c); if (unlikely(!__pyx_tuple__10)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 441; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__10);
  __Pyx_GIVEREF(__pyx_tuple__10);

  /* "_rmsd.pyx":443
 *         raise ValueError("xyz_align1 and xyz_displ1 must contain the same number of frames")
 *     if not xyz_align2.shape[0] == xyz_displ2.shape[0]:
 *         raise ValueError("xyz_align2 and xyz_displ2 must contain the same number of frames")             # <<<<<<<<<<<<<<
 *     if frame >= xyz_align1.shape[0]:
 *         raise ValueError("Cannot calculate RMSD of frame %d: xyz1 has "
 */
  __pyx_tuple__11 = PyTuple_Pack(1, __pyx_kp_s_xyz_align2_and_xyz_displ2_must_c); if (unlikely(!__pyx_tuple__11)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 443; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__11);
  __Pyx_GIVEREF(__pyx_tuple__11);

  /* "View.MemoryView":129
 * 
 *         if not self.ndim:
 *             raise ValueError("Empty shape tuple for cython.array")             # <<<<<<<<<<<<<<
 * 
 *         if itemsize <= 0:
 */
  __pyx_tuple__12 = PyTuple_Pack(1, __pyx_kp_s_Empty_shape_tuple_for_cython_arr); if (unlikely(!__pyx_tuple__12)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 129; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__12);
  __Pyx_GIVEREF(__pyx_tuple__12);

  /* "View.MemoryView":132
 * 
 *         if itemsize <= 0:
 *             raise ValueError("itemsize <= 0 for cython.array")             # <<<<<<<<<<<<<<
 * 
 *         if not isinstance(format, bytes):
 */
  __pyx_tuple__13 = PyTuple_Pack(1, __pyx_kp_s_itemsize_0_for_cython_array); if (unlikely(!__pyx_tuple__13)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__13);
  __Pyx_GIVEREF(__pyx_tuple__13);

  /* "View.MemoryView":135
 * 
 *         if not isinstance(format, bytes):
 *             format = format.encode('ASCII')             # <<<<<<<<<<<<<<
 *         self._format = format  # keep a reference to the byte string
 *         self.format = self._format
 */
  __pyx_tuple__14 = PyTuple_Pack(1, __pyx_n_s_ASCII); if (unlikely(!__pyx_tuple__14)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 135; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__14);
  __Pyx_GIVEREF(__pyx_tuple__14);

  /* "View.MemoryView":144
 * 
 *         if not self._shape:
 *             raise MemoryError("unable to allocate shape and strides.")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_tuple__15 = PyTuple_Pack(1, __pyx_kp_s_unable_to_allocate_shape_and_str); if (unlikely(!__pyx_tuple__15)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 144; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__15);
  __Pyx_GIVEREF(__pyx_tuple__15);

  /* "View.MemoryView":172
 *             self.data = <char *>malloc(self.len)
 *             if not self.data:
 *                 raise MemoryError("unable to allocate array data.")             # <<<<<<<<<<<<<<
 * 
 *             if self.dtype_is_object:
 */
  __pyx_tuple__16 = PyTuple_Pack(1, __pyx_kp_s_unable_to_allocate_array_data); if (unlikely(!__pyx_tuple__16)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__16);
  __Pyx_GIVEREF(__pyx_tuple__16);

  /* "View.MemoryView":188
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         if not (flags & bufmode):
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")             # <<<<<<<<<<<<<<
 *         info.buf = self.data
 *         info.len = self.len
 */
  __pyx_tuple__17 = PyTuple_Pack(1, __pyx_kp_s_Can_only_create_a_buffer_that_is); if (unlikely(!__pyx_tuple__17)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 188; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__17);
  __Pyx_GIVEREF(__pyx_tuple__17);

  /* "View.MemoryView":447
 *             result = struct.unpack(self.view.format, bytesitem)
 *         except struct.error:
 *             raise ValueError("Unable to convert item to object")             # <<<<<<<<<<<<<<
 *         else:
 *             if len(self.view.format) == 1:
 */
  __pyx_tuple__18 = PyTuple_Pack(1, __pyx_kp_s_Unable_to_convert_item_to_object); if (unlikely(!__pyx_tuple__18)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 447; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__18);
  __Pyx_GIVEREF(__pyx_tuple__18);

  /* "View.MemoryView":523
 *             if self.view.strides == NULL:
 * 
 *                 raise ValueError("Buffer view does not expose strides")             # <<<<<<<<<<<<<<
 * 
 *             return tuple([stride for stride in self.view.strides[:self.view.ndim]])
 */
  __pyx_tuple__19 = PyTuple_Pack(1, __pyx_kp_s_Buffer_view_does_not_expose_stri); if (unlikely(!__pyx_tuple__19)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 523; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__19);
  __Pyx_GIVEREF(__pyx_tuple__19);

  /* "View.MemoryView":531
 *         def __get__(self):
 *             if self.view.suboffsets == NULL:
 *                 return (-1,) * self.view.ndim             # <<<<<<<<<<<<<<
 * 
 *             return tuple([suboffset for suboffset in self.view.suboffsets[:self.view.ndim]])
 */
  __pyx_tuple__20 = PyTuple_New(1); if (unlikely(!__pyx_tuple__20)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 531; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__20);
  __Pyx_INCREF(__pyx_int_neg_1);
  __Pyx_GIVEREF(__pyx_int_neg_1);
  PyTuple_SET_ITEM(__pyx_tuple__20, 0, __pyx_int_neg_1);
  __Pyx_GIVEREF(__pyx_tuple__20);

  /* "View.MemoryView":640
 *         if item is Ellipsis:
 *             if not seen_ellipsis:
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))             # <<<<<<<<<<<<<<
 *                 seen_ellipsis = True
 *             else:
 */
  __pyx_slice__21 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__21)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 640; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_slice__21);
  __Pyx_GIVEREF(__pyx_slice__21);

  /* "View.MemoryView":643
 *                 seen_ellipsis = True
 *             else:
 *                 result.append(slice(None))             # <<<<<<<<<<<<<<
 *             have_slices = True
 *         else:
 */
  __pyx_slice__22 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__22)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 643; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_slice__22);
  __Pyx_GIVEREF(__pyx_slice__22);

  /* "View.MemoryView":654
 *     nslices = ndim - len(result)
 *     if nslices:
 *         result.extend([slice(None)] * nslices)             # <<<<<<<<<<<<<<
 * 
 *     return have_slices or nslices, tuple(result)
 */
  __pyx_slice__23 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__23)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 654; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_slice__23);
  __Pyx_GIVEREF(__pyx_slice__23);

  /* "View.MemoryView":661
 *     for suboffset in suboffsets[:ndim]:
 *         if suboffset >= 0:
 *             raise ValueError("Indirect dimensions not supported")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_tuple__24 = PyTuple_Pack(1, __pyx_kp_s_Indirect_dimensions_not_supporte); if (unlikely(!__pyx_tuple__24)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 661; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__24);
  __Pyx_GIVEREF(__pyx_tuple__24);

  /* "_rmsd.pyx":59
 * 
 * @cython.boundscheck(False)
 * def rmsd(target, reference, int frame=0, atom_indices=None,             # <<<<<<<<<<<<<<
 *          ref_atom_indices=None, bool parallel=True, bool precentered=False):
 *     """rmsd(target, reference, frame=0, atom_indices=None, parallel=True, precentered=False)
 */
  __pyx_tuple__25 = PyTuple_Pack(16, __pyx_n_s_target, __pyx_n_s_reference, __pyx_n_s_frame, __pyx_n_s_atom_indices, __pyx_n_s_ref_atom_indices, __pyx_n_s_parallel, __pyx_n_s_precentered, __pyx_n_s_i, __pyx_n_s_msd, __pyx_n_s_ref_g, __pyx_n_s_target_xyz, __pyx_n_s_ref_xyz_frame, __pyx_n_s_target_g, __pyx_n_s_target_n_frames, __pyx_n_s_n_atoms, __pyx_n_s_distances); if (unlikely(!__pyx_tuple__25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__25);
  __Pyx_GIVEREF(__pyx_tuple__25);
  __pyx_codeobj__26 = (PyObject*)__Pyx_PyCode_New(7, 0, 16, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__25, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_harrigan_source_mdtraj_mdt, __pyx_n_s_rmsd, 59, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__26)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  /* "_rmsd.pyx":196
 * 
 * 
 * def _center_inplace_atom_major(float[:, :, ::1] xyz not None):             # <<<<<<<<<<<<<<
 *     assert xyz.shape[2] == 3
 *     cdef float[:] traces = np.empty(xyz.shape[0], dtype=np.float32)
 */
  __pyx_tuple__27 = PyTuple_Pack(3, __pyx_n_s_xyz, __pyx_n_s_xyz, __pyx_n_s_traces); if (unlikely(!__pyx_tuple__27)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 196; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__27);
  __Pyx_GIVEREF(__pyx_tuple__27);
  __pyx_codeobj__28 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__27, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_harrigan_source_mdtraj_mdt, __pyx_n_s_center_inplace_atom_major, 196, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__28)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 196; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  /* "_rmsd.pyx":211
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleRMSDs_axis_major(float[:, :, ::1] xyz1 not None,             # <<<<<<<<<<<<<<
 *                                 float[:, :, ::1] xyz2 not None, float[::1] g1,
 *                                 float[::1] g2, int frame, bool parallel=True):
 */
  __pyx_tuple__29 = PyTuple_Pack(11, __pyx_n_s_xyz1, __pyx_n_s_xyz2, __pyx_n_s_g1, __pyx_n_s_g2, __pyx_n_s_frame, __pyx_n_s_parallel, __pyx_n_s_i, __pyx_n_s_n_frames, __pyx_n_s_n_atoms, __pyx_n_s_msd, __pyx_n_s_distances); if (unlikely(!__pyx_tuple__29)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 211; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__29);
  __Pyx_GIVEREF(__pyx_tuple__29);
  __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(6, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_harrigan_source_mdtraj_mdt, __pyx_n_s_getMultipleRMSDs_axis_major, 211, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 211; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  /* "_rmsd.pyx":271
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleRMSDs_atom_major(float[:, :, ::1] xyz1 not None, float[:, :, ::1] xyz2 not None,             # <<<<<<<<<<<<<<
 *                                 float[::1] g1 not None, float[::1] g2 not None, int frame,
 *                                 bool parallel=True):
 */
  __pyx_tuple__31 = PyTuple_Pack(11, __pyx_n_s_xyz1, __pyx_n_s_xyz2, __pyx_n_s_g1, __pyx_n_s_g2, __pyx_n_s_frame, __pyx_n_s_parallel, __pyx_n_s_i, __pyx_n_s_n_frames, __pyx_n_s_n_atoms, __pyx_n_s_msd, __pyx_n_s_distances); if (unlikely(!__pyx_tuple__31)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__31);
  __Pyx_GIVEREF(__pyx_tuple__31);
  __pyx_codeobj__32 = (PyObject*)__Pyx_PyCode_New(6, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__31, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_harrigan_source_mdtraj_mdt, __pyx_n_s_getMultipleRMSDs_atom_major, 271, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__32)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  /* "_rmsd.pyx":329
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def superpose_atom_major(float[:, :, ::1] xyz_align_target not None,             # <<<<<<<<<<<<<<
 *                          float[:, :, ::1] xyz_align_mobile not None,
 *                          float[::1] g_target not None, float[::1] g_mobile not None,
 */
  __pyx_tuple__33 = PyTuple_Pack(12, __pyx_n_s_xyz_align_target, __pyx_n_s_xyz_align_mobile, __pyx_n_s_g_target, __pyx_n_s_g_mobile, __pyx_n_s_xyz_displace_mobile, __pyx_n_s_target_frame, __pyx_n_s_parallel, __pyx_n_s_i, __pyx_n_s_n_frames, __pyx_n_s_n_atoms_align, __pyx_n_s_n_atoms_displace, __pyx_n_s_rot); if (unlikely(!__pyx_tuple__33)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__33);
  __Pyx_GIVEREF(__pyx_tuple__33);
  __pyx_codeobj__34 = (PyObject*)__Pyx_PyCode_New(7, 0, 12, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__33, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_harrigan_source_mdtraj_mdt, __pyx_n_s_superpose_atom_major, 329, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__34)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  /* "_rmsd.pyx":388
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleAlignDisplaceRMSDs_atom_major(float[:, :, ::1] xyz_align1 not None,             # <<<<<<<<<<<<<<
 *     float[:, :, ::1] xyz_align2 not None, float[::1] g_align1 not None,
 *     float[::1] g_align2 not None, float[:, :, ::1] xyz_displ1 not None,
 */
  __pyx_tuple__35 = PyTuple_Pack(17, __pyx_n_s_xyz_align1, __pyx_n_s_xyz_align2, __pyx_n_s_g_align1, __pyx_n_s_g_align2, __pyx_n_s_xyz_displ1, __pyx_n_s_xyz_displ2, __pyx_n_s_n_atoms_align, __pyx_n_s_n_atoms_displ, __pyx_n_s_frame, __pyx_n_s_parallel, __pyx_n_s_msd, __pyx_n_s_i, __pyx_n_s_n_frames, __pyx_n_s_n_align_atoms_padded, __pyx_n_s_n_displ_atoms_padded, __pyx_n_s_rot, __pyx_n_s_distances); if (unlikely(!__pyx_tuple__35)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__35);
  __Pyx_GIVEREF(__pyx_tuple__35);
  __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(10, 0, 17, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_harrigan_source_mdtraj_mdt, __pyx_n_s_getMultipleAlignDisplaceRMSDs_at, 388, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  /* "View.MemoryView":278
 *         return self.name
 * 
 * cdef generic = Enum("<strided and direct or indirect>")             # <<<<<<<<<<<<<<
 * cdef strided = Enum("<strided and direct>") # default
 * cdef indirect = Enum("<strided and indirect>")
 */
  __pyx_tuple__37 = PyTuple_Pack(1, __pyx_kp_s_strided_and_direct_or_indirect); if (unlikely(!__pyx_tuple__37)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 278; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__37);
  __Pyx_GIVEREF(__pyx_tuple__37);

  /* "View.MemoryView":279
 * 
 * cdef generic = Enum("<strided and direct or indirect>")
 * cdef strided = Enum("<strided and direct>") # default             # <<<<<<<<<<<<<<
 * cdef indirect = Enum("<strided and indirect>")
 * 
 */
  __pyx_tuple__38 = PyTuple_Pack(1, __pyx_kp_s_strided_and_direct); if (unlikely(!__pyx_tuple__38)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__38);
  __Pyx_GIVEREF(__pyx_tuple__38);

  /* "View.MemoryView":280
 * cdef generic = Enum("<strided and direct or indirect>")
 * cdef strided = Enum("<strided and direct>") # default
 * cdef indirect = Enum("<strided and indirect>")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_tuple__39 = PyTuple_Pack(1, __pyx_kp_s_strided_and_indirect); if (unlikely(!__pyx_tuple__39)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 280; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__39);
  __Pyx_GIVEREF(__pyx_tuple__39);

  /* "View.MemoryView":283
 * 
 * 
 * cdef contiguous = Enum("<contiguous and direct>")             # <<<<<<<<<<<<<<
 * cdef indirect_contiguous = Enum("<contiguous and indirect>")
 * 
 */
  __pyx_tuple__40 = PyTuple_Pack(1, __pyx_kp_s_contiguous_and_direct); if (unlikely(!__pyx_tuple__40)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 283; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__40);
  __Pyx_GIVEREF(__pyx_tuple__40);

  /* "View.MemoryView":284
 * 
 * cdef contiguous = Enum("<contiguous and direct>")
 * cdef indirect_contiguous = Enum("<contiguous and indirect>")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_tuple__41 = PyTuple_Pack(1, __pyx_kp_s_contiguous_and_indirect); if (unlikely(!__pyx_tuple__41)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 284; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_tuple__41);
  __Pyx_GIVEREF(__pyx_tuple__41);
  __Pyx_RefNannyFinishContext();
  return 0;
  __pyx_L1_error:;
  __Pyx_RefNannyFinishContext();
  return -1;
}

static int __Pyx_InitGlobals(void) {
  /* InitThreads.init */
  #ifdef WITH_THREAD
PyEval_InitThreads();
#endif

if (unlikely(PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}

  if (__Pyx_InitStrings(__pyx_string_tab) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
  __pyx_int_0 = PyInt_FromLong(0); if (unlikely(!__pyx_int_0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_int_1 = PyInt_FromLong(1); if (unlikely(!__pyx_int_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_int_3 = PyInt_FromLong(3); if (unlikely(!__pyx_int_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_int_neg_1 = PyInt_FromLong(-1); if (unlikely(!__pyx_int_neg_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  return 0;
  __pyx_L1_error:;
  return -1;
}

#if PY_MAJOR_VERSION < 3
PyMODINIT_FUNC init_rmsd(void); /*proto*/
PyMODINIT_FUNC init_rmsd(void)
#else
PyMODINIT_FUNC PyInit__rmsd(void); /*proto*/
PyMODINIT_FUNC PyInit__rmsd(void)
#endif
{
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannyDeclarations
  #if CYTHON_REFNANNY
  __Pyx_RefNanny = __Pyx_RefNannyImportAPI("refnanny");
  if (!__Pyx_RefNanny) {
      PyErr_Clear();
      __Pyx_RefNanny = __Pyx_RefNannyImportAPI("Cython.Runtime.refnanny");
      if (!__Pyx_RefNanny)
          Py_FatalError("failed to import 'refnanny' module");
  }
  #endif
  __Pyx_RefNannySetupContext("PyMODINIT_FUNC PyInit__rmsd(void)", 0);
  if (__Pyx_check_binary_version() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_empty_tuple = PyTuple_New(0); if (unlikely(!__pyx_empty_tuple)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_empty_bytes = PyBytes_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_bytes)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  #ifdef __Pyx_CyFunction_USED
  if (__pyx_CyFunction_init() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  #endif
  #ifdef __Pyx_FusedFunction_USED
  if (__pyx_FusedFunction_init() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  #endif
  #ifdef __Pyx_Coroutine_USED
  if (__pyx_Coroutine_init() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  #endif
  #ifdef __Pyx_Generator_USED
  if (__pyx_Generator_init() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  #endif
  #ifdef __Pyx_StopAsyncIteration_USED
  if (__pyx_StopAsyncIteration_init() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  #endif
  /*--- Library function declarations ---*/
  /*--- Threads initialization code ---*/
  #if defined(__PYX_FORCE_INIT_THREADS) && __PYX_FORCE_INIT_THREADS
  #ifdef WITH_THREAD /* Python build with threading support? */
  PyEval_InitThreads();
  #endif
  #endif
  /*--- Module creation code ---*/
  #if PY_MAJOR_VERSION < 3
  __pyx_m = Py_InitModule4("_rmsd", __pyx_methods, 0, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m);
  #else
  __pyx_m = PyModule_Create(&__pyx_moduledef);
  #endif
  if (unlikely(!__pyx_m)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  Py_INCREF(__pyx_d);
  __pyx_b = PyImport_AddModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  #if CYTHON_COMPILING_IN_PYPY
  Py_INCREF(__pyx_b);
  #endif
  if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;};
  /*--- Initialize various global constants etc. ---*/
  if (__Pyx_InitGlobals() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  #if PY_MAJOR_VERSION < 3 && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT)
  if (__Pyx_init_sys_getdefaultencoding_params() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  #endif
  if (__pyx_module_is_main__rmsd) {
    if (PyObject_SetAttrString(__pyx_m, "__name__", __pyx_n_s_main) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  }
  #if PY_MAJOR_VERSION >= 3
  {
    PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    if (!PyDict_GetItemString(modules, "_rmsd")) {
      if (unlikely(PyDict_SetItemString(modules, "_rmsd", __pyx_m) < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
    }
  }
  #endif
  /*--- Builtin init code ---*/
  if (__Pyx_InitCachedBuiltins() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  /*--- Constants init code ---*/
  if (__Pyx_InitCachedConstants() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  /*--- Global init code ---*/
  generic = Py_None; Py_INCREF(Py_None);
  strided = Py_None; Py_INCREF(Py_None);
  indirect = Py_None; Py_INCREF(Py_None);
  contiguous = Py_None; Py_INCREF(Py_None);
  indirect_contiguous = Py_None; Py_INCREF(Py_None);
  /*--- Variable export code ---*/
  /*--- Function export code ---*/
  /*--- Type init code ---*/
  if (PyType_Ready(&__pyx_type___pyx_array) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 101; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_type___pyx_array.tp_print = 0;
  __pyx_array_type = &__pyx_type___pyx_array;
  if (PyType_Ready(&__pyx_type___pyx_MemviewEnum) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_type___pyx_MemviewEnum.tp_print = 0;
  __pyx_MemviewEnum_type = &__pyx_type___pyx_MemviewEnum;
  __pyx_vtabptr_memoryview = &__pyx_vtable_memoryview;
  __pyx_vtable_memoryview.get_item_pointer = (char *(*)(struct __pyx_memoryview_obj *, PyObject *))__pyx_memoryview_get_item_pointer;
  __pyx_vtable_memoryview.is_slice = (PyObject *(*)(struct __pyx_memoryview_obj *, PyObject *))__pyx_memoryview_is_slice;
  __pyx_vtable_memoryview.setitem_slice_assignment = (PyObject *(*)(struct __pyx_memoryview_obj *, PyObject *, PyObject *))__pyx_memoryview_setitem_slice_assignment;
  __pyx_vtable_memoryview.setitem_slice_assign_scalar = (PyObject *(*)(struct __pyx_memoryview_obj *, struct __pyx_memoryview_obj *, PyObject *))__pyx_memoryview_setitem_slice_assign_scalar;
  __pyx_vtable_memoryview.setitem_indexed = (PyObject *(*)(struct __pyx_memoryview_obj *, PyObject *, PyObject *))__pyx_memoryview_setitem_indexed;
  __pyx_vtable_memoryview.convert_item_to_object = (PyObject *(*)(struct __pyx_memoryview_obj *, char *))__pyx_memoryview_convert_item_to_object;
  __pyx_vtable_memoryview.assign_item_from_object = (PyObject *(*)(struct __pyx_memoryview_obj *, char *, PyObject *))__pyx_memoryview_assign_item_from_object;
  if (PyType_Ready(&__pyx_type___pyx_memoryview) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 304; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_type___pyx_memoryview.tp_print = 0;
  if (__Pyx_SetVtable(__pyx_type___pyx_memoryview.tp_dict, __pyx_vtabptr_memoryview) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 304; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_memoryview_type = &__pyx_type___pyx_memoryview;
  __pyx_vtabptr__memoryviewslice = &__pyx_vtable__memoryviewslice;
  __pyx_vtable__memoryviewslice.__pyx_base = *__pyx_vtabptr_memoryview;
  __pyx_vtable__memoryviewslice.__pyx_base.convert_item_to_object = (PyObject *(*)(struct __pyx_memoryview_obj *, char *))__pyx_memoryviewslice_convert_item_to_object;
  __pyx_vtable__memoryviewslice.__pyx_base.assign_item_from_object = (PyObject *(*)(struct __pyx_memoryview_obj *, char *, PyObject *))__pyx_memoryviewslice_assign_item_from_object;
  __pyx_type___pyx_memoryviewslice.tp_base = __pyx_memoryview_type;
  if (PyType_Ready(&__pyx_type___pyx_memoryviewslice) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 923; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_type___pyx_memoryviewslice.tp_print = 0;
  if (__Pyx_SetVtable(__pyx_type___pyx_memoryviewslice.tp_dict, __pyx_vtabptr__memoryviewslice) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 923; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_memoryviewslice_type = &__pyx_type___pyx_memoryviewslice;
  /*--- Type import code ---*/
  __pyx_ptype_7cpython_4type_type = __Pyx_ImportType(__Pyx_BUILTIN_MODULE_NAME, "type", 
  #if CYTHON_COMPILING_IN_PYPY
  sizeof(PyTypeObject),
  #else
  sizeof(PyHeapTypeObject),
  #endif
  0); if (unlikely(!__pyx_ptype_7cpython_4type_type)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 9; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_ptype_7cpython_4bool_bool = __Pyx_ImportType(__Pyx_BUILTIN_MODULE_NAME, "bool", sizeof(PyBoolObject), 0); if (unlikely(!__pyx_ptype_7cpython_4bool_bool)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 8; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __pyx_ptype_7cpython_7complex_complex = __Pyx_ImportType(__Pyx_BUILTIN_MODULE_NAME, "complex", sizeof(PyComplexObject), 0); if (unlikely(!__pyx_ptype_7cpython_7complex_complex)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  /*--- Variable import code ---*/
  /*--- Function import code ---*/
  /*--- Execution code ---*/
  #if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED)
  if (__Pyx_patch_abc() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  #endif

  /* "_rmsd.pyx":29
 * 
 * import cython
 * import numpy as np             # <<<<<<<<<<<<<<
 * from mdtraj.utils import ensure_type
 * 
 */
  __pyx_t_1 = __Pyx_Import(__pyx_n_s_numpy, 0, -1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 29; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_np, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 29; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "_rmsd.pyx":30
 * import cython
 * import numpy as np
 * from mdtraj.utils import ensure_type             # <<<<<<<<<<<<<<
 * 
 * from cpython cimport bool
 */
  __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 30; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_INCREF(__pyx_n_s_ensure_type);
  __Pyx_GIVEREF(__pyx_n_s_ensure_type);
  PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_ensure_type);
  __pyx_t_2 = __Pyx_Import(__pyx_n_s_mdtraj_utils, __pyx_t_1, -1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 30; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_ensure_type); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 30; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_ensure_type, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 30; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "_rmsd.pyx":59
 * 
 * @cython.boundscheck(False)
 * def rmsd(target, reference, int frame=0, atom_indices=None,             # <<<<<<<<<<<<<<
 *          ref_atom_indices=None, bool parallel=True, bool precentered=False):
 *     """rmsd(target, reference, frame=0, atom_indices=None, parallel=True, precentered=False)
 */
  __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_5_rmsd_1rmsd, NULL, __pyx_n_s_rmsd_2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_rmsd, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "_rmsd.pyx":196
 * 
 * 
 * def _center_inplace_atom_major(float[:, :, ::1] xyz not None):             # <<<<<<<<<<<<<<
 *     assert xyz.shape[2] == 3
 *     cdef float[:] traces = np.empty(xyz.shape[0], dtype=np.float32)
 */
  __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_5_rmsd_3_center_inplace_atom_major, NULL, __pyx_n_s_rmsd_2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 196; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_center_inplace_atom_major, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 196; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "_rmsd.pyx":211
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleRMSDs_axis_major(float[:, :, ::1] xyz1 not None,             # <<<<<<<<<<<<<<
 *                                 float[:, :, ::1] xyz2 not None, float[::1] g1,
 *                                 float[::1] g2, int frame, bool parallel=True):
 */
  __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_5_rmsd_5getMultipleRMSDs_axis_major, NULL, __pyx_n_s_rmsd_2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 211; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_getMultipleRMSDs_axis_major, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 211; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "_rmsd.pyx":271
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleRMSDs_atom_major(float[:, :, ::1] xyz1 not None, float[:, :, ::1] xyz2 not None,             # <<<<<<<<<<<<<<
 *                                 float[::1] g1 not None, float[::1] g2 not None, int frame,
 *                                 bool parallel=True):
 */
  __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_5_rmsd_7getMultipleRMSDs_atom_major, NULL, __pyx_n_s_rmsd_2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_getMultipleRMSDs_atom_major, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 271; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "_rmsd.pyx":329
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def superpose_atom_major(float[:, :, ::1] xyz_align_target not None,             # <<<<<<<<<<<<<<
 *                          float[:, :, ::1] xyz_align_mobile not None,
 *                          float[::1] g_target not None, float[::1] g_mobile not None,
 */
  __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_5_rmsd_9superpose_atom_major, NULL, __pyx_n_s_rmsd_2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_superpose_atom_major, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "_rmsd.pyx":388
 * @cython.boundscheck(False)
 * @cython.wraparound(False)
 * def getMultipleAlignDisplaceRMSDs_atom_major(float[:, :, ::1] xyz_align1 not None,             # <<<<<<<<<<<<<<
 *     float[:, :, ::1] xyz_align2 not None, float[::1] g_align1 not None,
 *     float[::1] g_align2 not None, float[:, :, ::1] xyz_displ1 not None,
 */
  __pyx_t_2 = PyCFunction_NewEx(&__pyx_mdef_5_rmsd_11getMultipleAlignDisplaceRMSDs_atom_major, NULL, __pyx_n_s_rmsd_2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_getMultipleAlignDisplaceRMSDs_at, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "_rmsd.pyx":1
 * ##############################################################################             # <<<<<<<<<<<<<<
 * # MDTraj: A Python Library for Loading, Saving, and Manipulating
 * #         Molecular Dynamics Trajectories.
 */
  __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_t_2, __pyx_kp_u_rmsd_line_59, __pyx_kp_u_rmsd_target_reference_frame_0_at) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "View.MemoryView":205
 *         info.obj = self
 * 
 *     __pyx_getbuffer = capsule(<void *> &__pyx_array_getbuffer, "getbuffer(obj, view, flags)")             # <<<<<<<<<<<<<<
 * 
 *     def __dealloc__(array self):
 */
  __pyx_t_2 = __pyx_capsule_create(((void *)(&__pyx_array_getbuffer)), __pyx_k_getbuffer_obj_view_flags); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 205; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_array_type->tp_dict, __pyx_n_s_pyx_getbuffer, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 205; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  PyType_Modified(__pyx_array_type);

  /* "View.MemoryView":278
 *         return self.name
 * 
 * cdef generic = Enum("<strided and direct or indirect>")             # <<<<<<<<<<<<<<
 * cdef strided = Enum("<strided and direct>") # default
 * cdef indirect = Enum("<strided and indirect>")
 */
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_MemviewEnum_type), __pyx_tuple__37, NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 278; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_XGOTREF(generic);
  __Pyx_DECREF_SET(generic, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_2);
  __pyx_t_2 = 0;

  /* "View.MemoryView":279
 * 
 * cdef generic = Enum("<strided and direct or indirect>")
 * cdef strided = Enum("<strided and direct>") # default             # <<<<<<<<<<<<<<
 * cdef indirect = Enum("<strided and indirect>")
 * 
 */
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_MemviewEnum_type), __pyx_tuple__38, NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_XGOTREF(strided);
  __Pyx_DECREF_SET(strided, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_2);
  __pyx_t_2 = 0;

  /* "View.MemoryView":280
 * cdef generic = Enum("<strided and direct or indirect>")
 * cdef strided = Enum("<strided and direct>") # default
 * cdef indirect = Enum("<strided and indirect>")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_MemviewEnum_type), __pyx_tuple__39, NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 280; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_XGOTREF(indirect);
  __Pyx_DECREF_SET(indirect, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_2);
  __pyx_t_2 = 0;

  /* "View.MemoryView":283
 * 
 * 
 * cdef contiguous = Enum("<contiguous and direct>")             # <<<<<<<<<<<<<<
 * cdef indirect_contiguous = Enum("<contiguous and indirect>")
 * 
 */
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_MemviewEnum_type), __pyx_tuple__40, NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 283; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_XGOTREF(contiguous);
  __Pyx_DECREF_SET(contiguous, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_2);
  __pyx_t_2 = 0;

  /* "View.MemoryView":284
 * 
 * cdef contiguous = Enum("<contiguous and direct>")
 * cdef indirect_contiguous = Enum("<contiguous and indirect>")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_MemviewEnum_type), __pyx_tuple__41, NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 284; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_XGOTREF(indirect_contiguous);
  __Pyx_DECREF_SET(indirect_contiguous, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_2);
  __pyx_t_2 = 0;

  /* "View.MemoryView":498
 *         info.obj = self
 * 
 *     __pyx_getbuffer = capsule(<void *> &__pyx_memoryview_getbuffer, "getbuffer(obj, view, flags)")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_2 = __pyx_capsule_create(((void *)(&__pyx_memoryview_getbuffer)), __pyx_k_getbuffer_obj_view_flags); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 498; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_memoryview_type->tp_dict, __pyx_n_s_pyx_getbuffer, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 498; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  PyType_Modified(__pyx_memoryview_type);

  /* "View.MemoryView":954
 *             return self.from_object
 * 
 *     __pyx_getbuffer = capsule(<void *> &__pyx_memoryview_getbuffer, "getbuffer(obj, view, flags)")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_2 = __pyx_capsule_create(((void *)(&__pyx_memoryview_getbuffer)), __pyx_k_getbuffer_obj_view_flags); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 954; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_memoryviewslice_type->tp_dict, __pyx_n_s_pyx_getbuffer, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 954; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  PyType_Modified(__pyx_memoryviewslice_type);

  /* "View.MemoryView":1364
 * 
 * @cname('__pyx_memoryview__slice_assign_scalar')
 * cdef void _slice_assign_scalar(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                               Py_ssize_t *strides, int ndim,
 *                               size_t itemsize, void *item) nogil:
 */

  /*--- Wrapped vars code ---*/

  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  if (__pyx_m) {
    if (__pyx_d) {
      __Pyx_AddTraceback("init _rmsd", __pyx_clineno, __pyx_lineno, __pyx_filename);
    }
    Py_DECREF(__pyx_m); __pyx_m = 0;
  } else if (!PyErr_Occurred()) {
    PyErr_SetString(PyExc_ImportError, "init _rmsd");
  }
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  #if PY_MAJOR_VERSION < 3
  return;
  #else
  return __pyx_m;
  #endif
}

/* --- Runtime support code --- */
#if CYTHON_REFNANNY
static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) {
    PyObject *m = NULL, *p = NULL;
    void *r = NULL;
    m = PyImport_ImportModule((char *)modname);
    if (!m) goto end;
    p = PyObject_GetAttrString(m, (char *)"RefNannyAPI");
    if (!p) goto end;
    r = PyLong_AsVoidPtr(p);
end:
    Py_XDECREF(p);
    Py_XDECREF(m);
    return (__Pyx_RefNannyAPIStruct *)r;
}
#endif

static PyObject *__Pyx_GetBuiltinName(PyObject *name) {
    PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name);
    if (unlikely(!result)) {
        PyErr_Format(PyExc_NameError,
#if PY_MAJOR_VERSION >= 3
            "name '%U' is not defined", name);
#else
            "name '%.200s' is not defined", PyString_AS_STRING(name));
#endif
    }
    return result;
}

static void __Pyx_RaiseArgtupleInvalid(
    const char* func_name,
    int exact,
    Py_ssize_t num_min,
    Py_ssize_t num_max,
    Py_ssize_t num_found)
{
    Py_ssize_t num_expected;
    const char *more_or_less;
    if (num_found < num_min) {
        num_expected = num_min;
        more_or_less = "at least";
    } else {
        num_expected = num_max;
        more_or_less = "at most";
    }
    if (exact) {
        more_or_less = "exactly";
    }
    PyErr_Format(PyExc_TypeError,
                 "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)",
                 func_name, more_or_less, num_expected,
                 (num_expected == 1) ? "" : "s", num_found);
}

static void __Pyx_RaiseDoubleKeywordsError(
    const char* func_name,
    PyObject* kw_name)
{
    PyErr_Format(PyExc_TypeError,
        #if PY_MAJOR_VERSION >= 3
        "%s() got multiple values for keyword argument '%U'", func_name, kw_name);
        #else
        "%s() got multiple values for keyword argument '%s'", func_name,
        PyString_AsString(kw_name));
        #endif
}

static int __Pyx_ParseOptionalKeywords(
    PyObject *kwds,
    PyObject **argnames[],
    PyObject *kwds2,
    PyObject *values[],
    Py_ssize_t num_pos_args,
    const char* function_name)
{
    PyObject *key = 0, *value = 0;
    Py_ssize_t pos = 0;
    PyObject*** name;
    PyObject*** first_kw_arg = argnames + num_pos_args;
    while (PyDict_Next(kwds, &pos, &key, &value)) {
        name = first_kw_arg;
        while (*name && (**name != key)) name++;
        if (*name) {
            values[name-argnames] = value;
            continue;
        }
        name = first_kw_arg;
        #if PY_MAJOR_VERSION < 3
        if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) {
            while (*name) {
                if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key))
                        && _PyString_Eq(**name, key)) {
                    values[name-argnames] = value;
                    break;
                }
                name++;
            }
            if (*name) continue;
            else {
                PyObject*** argname = argnames;
                while (argname != first_kw_arg) {
                    if ((**argname == key) || (
                            (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key))
                             && _PyString_Eq(**argname, key))) {
                        goto arg_passed_twice;
                    }
                    argname++;
                }
            }
        } else
        #endif
        if (likely(PyUnicode_Check(key))) {
            while (*name) {
                int cmp = (**name == key) ? 0 :
                #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
                    (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                #endif
                    PyUnicode_Compare(**name, key);
                if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
                if (cmp == 0) {
                    values[name-argnames] = value;
                    break;
                }
                name++;
            }
            if (*name) continue;
            else {
                PyObject*** argname = argnames;
                while (argname != first_kw_arg) {
                    int cmp = (**argname == key) ? 0 :
                    #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
                        (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                    #endif
                        PyUnicode_Compare(**argname, key);
                    if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
                    if (cmp == 0) goto arg_passed_twice;
                    argname++;
                }
            }
        } else
            goto invalid_keyword_type;
        if (kwds2) {
            if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
        } else {
            goto invalid_keyword;
        }
    }
    return 0;
arg_passed_twice:
    __Pyx_RaiseDoubleKeywordsError(function_name, key);
    goto bad;
invalid_keyword_type:
    PyErr_Format(PyExc_TypeError,
        "%.200s() keywords must be strings", function_name);
    goto bad;
invalid_keyword:
    PyErr_Format(PyExc_TypeError,
    #if PY_MAJOR_VERSION < 3
        "%.200s() got an unexpected keyword argument '%.200s'",
        function_name, PyString_AsString(key));
    #else
        "%s() got an unexpected keyword argument '%U'",
        function_name, key);
    #endif
bad:
    return -1;
}

static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) {
    PyErr_Format(PyExc_TypeError,
        "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)",
        name, type->tp_name, Py_TYPE(obj)->tp_name);
}
static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
    const char *name, int exact)
{
    if (unlikely(!type)) {
        PyErr_SetString(PyExc_SystemError, "Missing type object");
        return 0;
    }
    if (none_allowed && obj == Py_None) return 1;
    else if (exact) {
        if (likely(Py_TYPE(obj) == type)) return 1;
        #if PY_MAJOR_VERSION == 2
        else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1;
        #endif
    }
    else {
        if (likely(PyObject_TypeCheck(obj, type))) return 1;
    }
    __Pyx_RaiseArgumentTypeInvalid(name, obj, type);
    return 0;
}

static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) {
    PyObject *result;
#if CYTHON_COMPILING_IN_CPYTHON
    result = PyDict_GetItem(__pyx_d, name);
    if (likely(result)) {
        Py_INCREF(result);
    } else {
#else
    result = PyObject_GetItem(__pyx_d, name);
    if (!result) {
        PyErr_Clear();
#endif
        result = __Pyx_GetBuiltinName(name);
    }
    return result;
}

#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) {
    PyObject *result;
    ternaryfunc call = func->ob_type->tp_call;
    if (unlikely(!call))
        return PyObject_Call(func, arg, kw);
    if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
        return NULL;
    result = (*call)(func, arg, kw);
    Py_LeaveRecursiveCall();
    if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
        PyErr_SetString(
            PyExc_SystemError,
            "NULL result without error in PyObject_Call");
    }
    return result;
}
#endif

#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) {
    PyObject *self, *result;
    PyCFunction cfunc;
    cfunc = PyCFunction_GET_FUNCTION(func);
    self = PyCFunction_GET_SELF(func);
    if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
        return NULL;
    result = cfunc(self, arg);
    Py_LeaveRecursiveCall();
    if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
        PyErr_SetString(
            PyExc_SystemError,
            "NULL result without error in PyObject_Call");
    }
    return result;
}
#endif

#if CYTHON_COMPILING_IN_CPYTHON
static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) {
    PyObject *result;
    PyObject *args = PyTuple_New(1);
    if (unlikely(!args)) return NULL;
    Py_INCREF(arg);
    PyTuple_SET_ITEM(args, 0, arg);
    result = __Pyx_PyObject_Call(func, args, NULL);
    Py_DECREF(args);
    return result;
}
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
#ifdef __Pyx_CyFunction_USED
    if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) {
#else
    if (likely(PyCFunction_Check(func))) {
#endif
        if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) {
            return __Pyx_PyObject_CallMethO(func, arg);
        }
    }
    return __Pyx__PyObject_CallOneArg(func, arg);
}
#else
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
    PyObject *result;
    PyObject *args = PyTuple_Pack(1, arg);
    if (unlikely(!args)) return NULL;
    result = __Pyx_PyObject_Call(func, args, NULL);
    Py_DECREF(args);
    return result;
}
#endif

static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) {
    PyObject *r;
    if (!j) return NULL;
    r = PyObject_GetItem(o, j);
    Py_DECREF(j);
    return r;
}
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
                                                              CYTHON_NCP_UNUSED int wraparound,
                                                              CYTHON_NCP_UNUSED int boundscheck) {
#if CYTHON_COMPILING_IN_CPYTHON
    if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o);
    if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) {
        PyObject *r = PyList_GET_ITEM(o, i);
        Py_INCREF(r);
        return r;
    }
    return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
#else
    return PySequence_GetItem(o, i);
#endif
}
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
                                                              CYTHON_NCP_UNUSED int wraparound,
                                                              CYTHON_NCP_UNUSED int boundscheck) {
#if CYTHON_COMPILING_IN_CPYTHON
    if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o);
    if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) {
        PyObject *r = PyTuple_GET_ITEM(o, i);
        Py_INCREF(r);
        return r;
    }
    return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
#else
    return PySequence_GetItem(o, i);
#endif
}
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list,
                                                     CYTHON_NCP_UNUSED int wraparound,
                                                     CYTHON_NCP_UNUSED int boundscheck) {
#if CYTHON_COMPILING_IN_CPYTHON
    if (is_list || PyList_CheckExact(o)) {
        Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o);
        if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) {
            PyObject *r = PyList_GET_ITEM(o, n);
            Py_INCREF(r);
            return r;
        }
    }
    else if (PyTuple_CheckExact(o)) {
        Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o);
        if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) {
            PyObject *r = PyTuple_GET_ITEM(o, n);
            Py_INCREF(r);
            return r;
        }
    } else {
        PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
        if (likely(m && m->sq_item)) {
            if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
                Py_ssize_t l = m->sq_length(o);
                if (likely(l >= 0)) {
                    i += l;
                } else {
                    if (PyErr_ExceptionMatches(PyExc_OverflowError))
                        PyErr_Clear();
                    else
                        return NULL;
                }
            }
            return m->sq_item(o, i);
        }
    }
#else
    if (is_list || PySequence_Check(o)) {
        return PySequence_GetItem(o, i);
    }
#endif
    return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
}

static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) {
#if CYTHON_COMPILING_IN_CPYTHON
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    PyThreadState *tstate = PyThreadState_GET();
    tmp_type = tstate->curexc_type;
    tmp_value = tstate->curexc_value;
    tmp_tb = tstate->curexc_traceback;
    tstate->curexc_type = type;
    tstate->curexc_value = value;
    tstate->curexc_traceback = tb;
    Py_XDECREF(tmp_type);
    Py_XDECREF(tmp_value);
    Py_XDECREF(tmp_tb);
#else
    PyErr_Restore(type, value, tb);
#endif
}
static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) {
#if CYTHON_COMPILING_IN_CPYTHON
    PyThreadState *tstate = PyThreadState_GET();
    *type = tstate->curexc_type;
    *value = tstate->curexc_value;
    *tb = tstate->curexc_traceback;
    tstate->curexc_type = 0;
    tstate->curexc_value = 0;
    tstate->curexc_traceback = 0;
#else
    PyErr_Fetch(type, value, tb);
#endif
}

#if PY_MAJOR_VERSION < 3
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
                        CYTHON_UNUSED PyObject *cause) {
    Py_XINCREF(type);
    if (!value || value == Py_None)
        value = NULL;
    else
        Py_INCREF(value);
    if (!tb || tb == Py_None)
        tb = NULL;
    else {
        Py_INCREF(tb);
        if (!PyTraceBack_Check(tb)) {
            PyErr_SetString(PyExc_TypeError,
                "raise: arg 3 must be a traceback or None");
            goto raise_error;
        }
    }
    if (PyType_Check(type)) {
#if CYTHON_COMPILING_IN_PYPY
        if (!value) {
            Py_INCREF(Py_None);
            value = Py_None;
        }
#endif
        PyErr_NormalizeException(&type, &value, &tb);
    } else {
        if (value) {
            PyErr_SetString(PyExc_TypeError,
                "instance exception may not have a separate value");
            goto raise_error;
        }
        value = type;
        type = (PyObject*) Py_TYPE(type);
        Py_INCREF(type);
        if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
            PyErr_SetString(PyExc_TypeError,
                "raise: exception class must be a subclass of BaseException");
            goto raise_error;
        }
    }
    __Pyx_ErrRestore(type, value, tb);
    return;
raise_error:
    Py_XDECREF(value);
    Py_XDECREF(type);
    Py_XDECREF(tb);
    return;
}
#else
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
    PyObject* owned_instance = NULL;
    if (tb == Py_None) {
        tb = 0;
    } else if (tb && !PyTraceBack_Check(tb)) {
        PyErr_SetString(PyExc_TypeError,
            "raise: arg 3 must be a traceback or None");
        goto bad;
    }
    if (value == Py_None)
        value = 0;
    if (PyExceptionInstance_Check(type)) {
        if (value) {
            PyErr_SetString(PyExc_TypeError,
                "instance exception may not have a separate value");
            goto bad;
        }
        value = type;
        type = (PyObject*) Py_TYPE(value);
    } else if (PyExceptionClass_Check(type)) {
        PyObject *instance_class = NULL;
        if (value && PyExceptionInstance_Check(value)) {
            instance_class = (PyObject*) Py_TYPE(value);
            if (instance_class != type) {
                int is_subclass = PyObject_IsSubclass(instance_class, type);
                if (!is_subclass) {
                    instance_class = NULL;
                } else if (unlikely(is_subclass == -1)) {
                    goto bad;
                } else {
                    type = instance_class;
                }
            }
        }
        if (!instance_class) {
            PyObject *args;
            if (!value)
                args = PyTuple_New(0);
            else if (PyTuple_Check(value)) {
                Py_INCREF(value);
                args = value;
            } else
                args = PyTuple_Pack(1, value);
            if (!args)
                goto bad;
            owned_instance = PyObject_Call(type, args, NULL);
            Py_DECREF(args);
            if (!owned_instance)
                goto bad;
            value = owned_instance;
            if (!PyExceptionInstance_Check(value)) {
                PyErr_Format(PyExc_TypeError,
                             "calling %R should have returned an instance of "
                             "BaseException, not %R",
                             type, Py_TYPE(value));
                goto bad;
            }
        }
    } else {
        PyErr_SetString(PyExc_TypeError,
            "raise: exception class must be a subclass of BaseException");
        goto bad;
    }
#if PY_VERSION_HEX >= 0x03030000
    if (cause) {
#else
    if (cause && cause != Py_None) {
#endif
        PyObject *fixed_cause;
        if (cause == Py_None) {
            fixed_cause = NULL;
        } else if (PyExceptionClass_Check(cause)) {
            fixed_cause = PyObject_CallObject(cause, NULL);
            if (fixed_cause == NULL)
                goto bad;
        } else if (PyExceptionInstance_Check(cause)) {
            fixed_cause = cause;
            Py_INCREF(fixed_cause);
        } else {
            PyErr_SetString(PyExc_TypeError,
                            "exception causes must derive from "
                            "BaseException");
            goto bad;
        }
        PyException_SetCause(value, fixed_cause);
    }
    PyErr_SetObject(type, value);
    if (tb) {
#if CYTHON_COMPILING_IN_PYPY
        PyObject *tmp_type, *tmp_value, *tmp_tb;
        PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb);
        Py_INCREF(tb);
        PyErr_Restore(tmp_type, tmp_value, tb);
        Py_XDECREF(tmp_tb);
#else
        PyThreadState *tstate = PyThreadState_GET();
        PyObject* tmp_tb = tstate->curexc_traceback;
        if (tb != tmp_tb) {
            Py_INCREF(tb);
            tstate->curexc_traceback = tb;
            Py_XDECREF(tmp_tb);
        }
#endif
    }
bad:
    Py_XDECREF(owned_instance);
    return;
}
#endif

#if CYTHON_USE_PYLONG_INTERNALS
  #include "longintrepr.h"
#endif

#if CYTHON_COMPILING_IN_CPYTHON
static PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) {
    if (op1 == op2) {
        Py_RETURN_TRUE;
    }
    #if PY_MAJOR_VERSION < 3
    if (likely(PyInt_CheckExact(op1))) {
        const long b = intval;
        long a = PyInt_AS_LONG(op1);
        if (a == b) {
            Py_RETURN_TRUE;
        } else {
            Py_RETURN_FALSE;
        }
    }
    #endif
    #if CYTHON_USE_PYLONG_INTERNALS && PY_MAJOR_VERSION >= 3
    if (likely(PyLong_CheckExact(op1))) {
        const long b = intval;
        long a;
        const digit* digits = ((PyLongObject*)op1)->ob_digit;
        const Py_ssize_t size = Py_SIZE(op1);
        if (likely(__Pyx_sst_abs(size) <= 1)) {
            a = likely(size) ? digits[0] : 0;
            if (size == -1) a = -a;
        } else {
            switch (size) {
                case -2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
                    }
                case 2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
                    }
                case -3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
                    }
                case 3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
                    }
                case -4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
                    }
                case 4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
                    }
                #if PyLong_SHIFT < 30 && PyLong_SHIFT != 15
                default: return PyLong_Type.tp_richcompare(op1, op2, Py_EQ);
                #else
                default: Py_RETURN_FALSE;
                #endif
            }
        }
            if (a == b) {
                Py_RETURN_TRUE;
            } else {
                Py_RETURN_FALSE;
            }
    }
    #endif
    if (PyFloat_CheckExact(op1)) {
        const long b = intval;
        double a = PyFloat_AS_DOUBLE(op1);
            if ((double)a == (double)b) {
                Py_RETURN_TRUE;
            } else {
                Py_RETURN_FALSE;
            }
    }
    return PyObject_RichCompare(op1, op2, Py_EQ);
}
#endif

static CYTHON_INLINE int __Pyx_IsLittleEndian(void) {
  unsigned int n = 1;
  return *(unsigned char*)(&n) != 0;
}
static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
                              __Pyx_BufFmt_StackElem* stack,
                              __Pyx_TypeInfo* type) {
  stack[0].field = &ctx->root;
  stack[0].parent_offset = 0;
  ctx->root.type = type;
  ctx->root.name = "buffer dtype";
  ctx->root.offset = 0;
  ctx->head = stack;
  ctx->head->field = &ctx->root;
  ctx->fmt_offset = 0;
  ctx->head->parent_offset = 0;
  ctx->new_packmode = '@';
  ctx->enc_packmode = '@';
  ctx->new_count = 1;
  ctx->enc_count = 0;
  ctx->enc_type = 0;
  ctx->is_complex = 0;
  ctx->is_valid_array = 0;
  ctx->struct_alignment = 0;
  while (type->typegroup == 'S') {
    ++ctx->head;
    ctx->head->field = type->fields;
    ctx->head->parent_offset = 0;
    type = type->fields->type;
  }
}
static int __Pyx_BufFmt_ParseNumber(const char** ts) {
    int count;
    const char* t = *ts;
    if (*t < '0' || *t > '9') {
      return -1;
    } else {
        count = *t++ - '0';
        while (*t >= '0' && *t < '9') {
            count *= 10;
            count += *t++ - '0';
        }
    }
    *ts = t;
    return count;
}
static int __Pyx_BufFmt_ExpectNumber(const char **ts) {
    int number = __Pyx_BufFmt_ParseNumber(ts);
    if (number == -1)
        PyErr_Format(PyExc_ValueError,\
                     "Does not understand character buffer dtype format string ('%c')", **ts);
    return number;
}
static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) {
  PyErr_Format(PyExc_ValueError,
               "Unexpected format string character: '%c'", ch);
}
static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) {
  switch (ch) {
    case 'c': return "'char'";
    case 'b': return "'signed char'";
    case 'B': return "'unsigned char'";
    case 'h': return "'short'";
    case 'H': return "'unsigned short'";
    case 'i': return "'int'";
    case 'I': return "'unsigned int'";
    case 'l': return "'long'";
    case 'L': return "'unsigned long'";
    case 'q': return "'long long'";
    case 'Q': return "'unsigned long long'";
    case 'f': return (is_complex ? "'complex float'" : "'float'");
    case 'd': return (is_complex ? "'complex double'" : "'double'");
    case 'g': return (is_complex ? "'complex long double'" : "'long double'");
    case 'T': return "a struct";
    case 'O': return "Python object";
    case 'P': return "a pointer";
    case 's': case 'p': return "a string";
    case 0: return "end";
    default: return "unparseable format string";
  }
}
static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) {
  switch (ch) {
    case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
    case 'h': case 'H': return 2;
    case 'i': case 'I': case 'l': case 'L': return 4;
    case 'q': case 'Q': return 8;
    case 'f': return (is_complex ? 8 : 4);
    case 'd': return (is_complex ? 16 : 8);
    case 'g': {
      PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g')..");
      return 0;
    }
    case 'O': case 'P': return sizeof(void*);
    default:
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
}
static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) {
  switch (ch) {
    case 'c': case 'b': case 'B': case 's': case 'p': return 1;
    case 'h': case 'H': return sizeof(short);
    case 'i': case 'I': return sizeof(int);
    case 'l': case 'L': return sizeof(long);
    #ifdef HAVE_LONG_LONG
    case 'q': case 'Q': return sizeof(PY_LONG_LONG);
    #endif
    case 'f': return sizeof(float) * (is_complex ? 2 : 1);
    case 'd': return sizeof(double) * (is_complex ? 2 : 1);
    case 'g': return sizeof(long double) * (is_complex ? 2 : 1);
    case 'O': case 'P': return sizeof(void*);
    default: {
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
  }
}
typedef struct { char c; short x; } __Pyx_st_short;
typedef struct { char c; int x; } __Pyx_st_int;
typedef struct { char c; long x; } __Pyx_st_long;
typedef struct { char c; float x; } __Pyx_st_float;
typedef struct { char c; double x; } __Pyx_st_double;
typedef struct { char c; long double x; } __Pyx_st_longdouble;
typedef struct { char c; void *x; } __Pyx_st_void_p;
#ifdef HAVE_LONG_LONG
typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong;
#endif
static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) {
  switch (ch) {
    case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
    case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short);
    case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int);
    case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long);
#ifdef HAVE_LONG_LONG
    case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG);
#endif
    case 'f': return sizeof(__Pyx_st_float) - sizeof(float);
    case 'd': return sizeof(__Pyx_st_double) - sizeof(double);
    case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double);
    case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*);
    default:
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
}
/* These are for computing the padding at the end of the struct to align
   on the first member of the struct. This will probably the same as above,
   but we don't have any guarantees.
 */
typedef struct { short x; char c; } __Pyx_pad_short;
typedef struct { int x; char c; } __Pyx_pad_int;
typedef struct { long x; char c; } __Pyx_pad_long;
typedef struct { float x; char c; } __Pyx_pad_float;
typedef struct { double x; char c; } __Pyx_pad_double;
typedef struct { long double x; char c; } __Pyx_pad_longdouble;
typedef struct { void *x; char c; } __Pyx_pad_void_p;
#ifdef HAVE_LONG_LONG
typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong;
#endif
static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) {
  switch (ch) {
    case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
    case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short);
    case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int);
    case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long);
#ifdef HAVE_LONG_LONG
    case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG);
#endif
    case 'f': return sizeof(__Pyx_pad_float) - sizeof(float);
    case 'd': return sizeof(__Pyx_pad_double) - sizeof(double);
    case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double);
    case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*);
    default:
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
}
static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) {
  switch (ch) {
    case 'c':
        return 'H';
    case 'b': case 'h': case 'i':
    case 'l': case 'q': case 's': case 'p':
        return 'I';
    case 'B': case 'H': case 'I': case 'L': case 'Q':
        return 'U';
    case 'f': case 'd': case 'g':
        return (is_complex ? 'C' : 'R');
    case 'O':
        return 'O';
    case 'P':
        return 'P';
    default: {
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
  }
}
static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) {
  if (ctx->head == NULL || ctx->head->field == &ctx->root) {
    const char* expected;
    const char* quote;
    if (ctx->head == NULL) {
      expected = "end";
      quote = "";
    } else {
      expected = ctx->head->field->type->name;
      quote = "'";
    }
    PyErr_Format(PyExc_ValueError,
                 "Buffer dtype mismatch, expected %s%s%s but got %s",
                 quote, expected, quote,
                 __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex));
  } else {
    __Pyx_StructField* field = ctx->head->field;
    __Pyx_StructField* parent = (ctx->head - 1)->field;
    PyErr_Format(PyExc_ValueError,
                 "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'",
                 field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex),
                 parent->type->name, field->name);
  }
}
static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) {
  char group;
  size_t size, offset, arraysize = 1;
  if (ctx->enc_type == 0) return 0;
  if (ctx->head->field->type->arraysize[0]) {
    int i, ndim = 0;
    if (ctx->enc_type == 's' || ctx->enc_type == 'p') {
        ctx->is_valid_array = ctx->head->field->type->ndim == 1;
        ndim = 1;
        if (ctx->enc_count != ctx->head->field->type->arraysize[0]) {
            PyErr_Format(PyExc_ValueError,
                         "Expected a dimension of size %zu, got %zu",
                         ctx->head->field->type->arraysize[0], ctx->enc_count);
            return -1;
        }
    }
    if (!ctx->is_valid_array) {
      PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d",
                   ctx->head->field->type->ndim, ndim);
      return -1;
    }
    for (i = 0; i < ctx->head->field->type->ndim; i++) {
      arraysize *= ctx->head->field->type->arraysize[i];
    }
    ctx->is_valid_array = 0;
    ctx->enc_count = 1;
  }
  group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex);
  do {
    __Pyx_StructField* field = ctx->head->field;
    __Pyx_TypeInfo* type = field->type;
    if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') {
      size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex);
    } else {
      size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex);
    }
    if (ctx->enc_packmode == '@') {
      size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex);
      size_t align_mod_offset;
      if (align_at == 0) return -1;
      align_mod_offset = ctx->fmt_offset % align_at;
      if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset;
      if (ctx->struct_alignment == 0)
          ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type,
                                                                 ctx->is_complex);
    }
    if (type->size != size || type->typegroup != group) {
      if (type->typegroup == 'C' && type->fields != NULL) {
        size_t parent_offset = ctx->head->parent_offset + field->offset;
        ++ctx->head;
        ctx->head->field = type->fields;
        ctx->head->parent_offset = parent_offset;
        continue;
      }
      if ((type->typegroup == 'H' || group == 'H') && type->size == size) {
      } else {
          __Pyx_BufFmt_RaiseExpected(ctx);
          return -1;
      }
    }
    offset = ctx->head->parent_offset + field->offset;
    if (ctx->fmt_offset != offset) {
      PyErr_Format(PyExc_ValueError,
                   "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected",
                   (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset);
      return -1;
    }
    ctx->fmt_offset += size;
    if (arraysize)
      ctx->fmt_offset += (arraysize - 1) * size;
    --ctx->enc_count;
    while (1) {
      if (field == &ctx->root) {
        ctx->head = NULL;
        if (ctx->enc_count != 0) {
          __Pyx_BufFmt_RaiseExpected(ctx);
          return -1;
        }
        break;
      }
      ctx->head->field = ++field;
      if (field->type == NULL) {
        --ctx->head;
        field = ctx->head->field;
        continue;
      } else if (field->type->typegroup == 'S') {
        size_t parent_offset = ctx->head->parent_offset + field->offset;
        if (field->type->fields->type == NULL) continue;
        field = field->type->fields;
        ++ctx->head;
        ctx->head->field = field;
        ctx->head->parent_offset = parent_offset;
        break;
      } else {
        break;
      }
    }
  } while (ctx->enc_count);
  ctx->enc_type = 0;
  ctx->is_complex = 0;
  return 0;
}
static CYTHON_INLINE PyObject *
__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp)
{
    const char *ts = *tsp;
    int i = 0, number;
    int ndim = ctx->head->field->type->ndim;
;
    ++ts;
    if (ctx->new_count != 1) {
        PyErr_SetString(PyExc_ValueError,
                        "Cannot handle repeated arrays in format string");
        return NULL;
    }
    if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
    while (*ts && *ts != ')') {
        switch (*ts) {
            case ' ': case '\f': case '\r': case '\n': case '\t': case '\v':  continue;
            default:  break;
        }
        number = __Pyx_BufFmt_ExpectNumber(&ts);
        if (number == -1) return NULL;
        if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i])
            return PyErr_Format(PyExc_ValueError,
                        "Expected a dimension of size %zu, got %d",
                        ctx->head->field->type->arraysize[i], number);
        if (*ts != ',' && *ts != ')')
            return PyErr_Format(PyExc_ValueError,
                                "Expected a comma in format string, got '%c'", *ts);
        if (*ts == ',') ts++;
        i++;
    }
    if (i != ndim)
        return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d",
                            ctx->head->field->type->ndim, i);
    if (!*ts) {
        PyErr_SetString(PyExc_ValueError,
                        "Unexpected end of format string, expected ')'");
        return NULL;
    }
    ctx->is_valid_array = 1;
    ctx->new_count = 1;
    *tsp = ++ts;
    return Py_None;
}
static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) {
  int got_Z = 0;
  while (1) {
    switch(*ts) {
      case 0:
        if (ctx->enc_type != 0 && ctx->head == NULL) {
          __Pyx_BufFmt_RaiseExpected(ctx);
          return NULL;
        }
        if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
        if (ctx->head != NULL) {
          __Pyx_BufFmt_RaiseExpected(ctx);
          return NULL;
        }
        return ts;
      case ' ':
      case '\r':
      case '\n':
        ++ts;
        break;
      case '<':
        if (!__Pyx_IsLittleEndian()) {
          PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler");
          return NULL;
        }
        ctx->new_packmode = '=';
        ++ts;
        break;
      case '>':
      case '!':
        if (__Pyx_IsLittleEndian()) {
          PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler");
          return NULL;
        }
        ctx->new_packmode = '=';
        ++ts;
        break;
      case '=':
      case '@':
      case '^':
        ctx->new_packmode = *ts++;
        break;
      case 'T':
        {
          const char* ts_after_sub;
          size_t i, struct_count = ctx->new_count;
          size_t struct_alignment = ctx->struct_alignment;
          ctx->new_count = 1;
          ++ts;
          if (*ts != '{') {
            PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'");
            return NULL;
          }
          if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
          ctx->enc_type = 0;
          ctx->enc_count = 0;
          ctx->struct_alignment = 0;
          ++ts;
          ts_after_sub = ts;
          for (i = 0; i != struct_count; ++i) {
            ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts);
            if (!ts_after_sub) return NULL;
          }
          ts = ts_after_sub;
          if (struct_alignment) ctx->struct_alignment = struct_alignment;
        }
        break;
      case '}':
        {
          size_t alignment = ctx->struct_alignment;
          ++ts;
          if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
          ctx->enc_type = 0;
          if (alignment && ctx->fmt_offset % alignment) {
            ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment);
          }
        }
        return ts;
      case 'x':
        if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
        ctx->fmt_offset += ctx->new_count;
        ctx->new_count = 1;
        ctx->enc_count = 0;
        ctx->enc_type = 0;
        ctx->enc_packmode = ctx->new_packmode;
        ++ts;
        break;
      case 'Z':
        got_Z = 1;
        ++ts;
        if (*ts != 'f' && *ts != 'd' && *ts != 'g') {
          __Pyx_BufFmt_RaiseUnexpectedChar('Z');
          return NULL;
        }
      case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I':
      case 'l': case 'L': case 'q': case 'Q':
      case 'f': case 'd': case 'g':
      case 'O': case 'p':
        if (ctx->enc_type == *ts && got_Z == ctx->is_complex &&
            ctx->enc_packmode == ctx->new_packmode) {
          ctx->enc_count += ctx->new_count;
          ctx->new_count = 1;
          got_Z = 0;
          ++ts;
          break;
        }
      case 's':
        if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
        ctx->enc_count = ctx->new_count;
        ctx->enc_packmode = ctx->new_packmode;
        ctx->enc_type = *ts;
        ctx->is_complex = got_Z;
        ++ts;
        ctx->new_count = 1;
        got_Z = 0;
        break;
      case ':':
        ++ts;
        while(*ts != ':') ++ts;
        ++ts;
        break;
      case '(':
        if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL;
        break;
      default:
        {
          int number = __Pyx_BufFmt_ExpectNumber(&ts);
          if (number == -1) return NULL;
          ctx->new_count = (size_t)number;
        }
    }
  }
}
static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) {
  buf->buf = NULL;
  buf->obj = NULL;
  buf->strides = __Pyx_zeros;
  buf->shape = __Pyx_zeros;
  buf->suboffsets = __Pyx_minusones;
}
static CYTHON_INLINE int __Pyx_GetBufferAndValidate(
        Py_buffer* buf, PyObject* obj,  __Pyx_TypeInfo* dtype, int flags,
        int nd, int cast, __Pyx_BufFmt_StackElem* stack)
{
  if (obj == Py_None || obj == NULL) {
    __Pyx_ZeroBuffer(buf);
    return 0;
  }
  buf->buf = NULL;
  if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail;
  if (buf->ndim != nd) {
    PyErr_Format(PyExc_ValueError,
                 "Buffer has wrong number of dimensions (expected %d, got %d)",
                 nd, buf->ndim);
    goto fail;
  }
  if (!cast) {
    __Pyx_BufFmt_Context ctx;
    __Pyx_BufFmt_Init(&ctx, stack, dtype);
    if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail;
  }
  if ((unsigned)buf->itemsize != dtype->size) {
    PyErr_Format(PyExc_ValueError,
      "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)",
      buf->itemsize, (buf->itemsize > 1) ? "s" : "",
      dtype->name, (Py_ssize_t)dtype->size, (dtype->size > 1) ? "s" : "");
    goto fail;
  }
  if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones;
  return 0;
fail:;
  __Pyx_ZeroBuffer(buf);
  return -1;
}
static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) {
  if (info->buf == NULL) return;
  if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL;
  __Pyx_ReleaseBuffer(info);
}

static int
__Pyx_init_memviewslice(struct __pyx_memoryview_obj *memview,
                        int ndim,
                        __Pyx_memviewslice *memviewslice,
                        int memview_is_new_reference)
{
    __Pyx_RefNannyDeclarations
    int i, retval=-1;
    Py_buffer *buf = &memview->view;
    __Pyx_RefNannySetupContext("init_memviewslice", 0);
    if (!buf) {
        PyErr_SetString(PyExc_ValueError,
            "buf is NULL.");
        goto fail;
    } else if (memviewslice->memview || memviewslice->data) {
        PyErr_SetString(PyExc_ValueError,
            "memviewslice is already initialized!");
        goto fail;
    }
    if (buf->strides) {
        for (i = 0; i < ndim; i++) {
            memviewslice->strides[i] = buf->strides[i];
        }
    } else {
        Py_ssize_t stride = buf->itemsize;
        for (i = ndim - 1; i >= 0; i--) {
            memviewslice->strides[i] = stride;
            stride *= buf->shape[i];
        }
    }
    for (i = 0; i < ndim; i++) {
        memviewslice->shape[i]   = buf->shape[i];
        if (buf->suboffsets) {
            memviewslice->suboffsets[i] = buf->suboffsets[i];
        } else {
            memviewslice->suboffsets[i] = -1;
        }
    }
    memviewslice->memview = memview;
    memviewslice->data = (char *)buf->buf;
    if (__pyx_add_acquisition_count(memview) == 0 && !memview_is_new_reference) {
        Py_INCREF(memview);
    }
    retval = 0;
    goto no_fail;
fail:
    memviewslice->memview = 0;
    memviewslice->data = 0;
    retval = -1;
no_fail:
    __Pyx_RefNannyFinishContext();
    return retval;
}
static CYTHON_INLINE void __pyx_fatalerror(const char *fmt, ...) {
    va_list vargs;
    char msg[200];
#ifdef HAVE_STDARG_PROTOTYPES
    va_start(vargs, fmt);
#else
    va_start(vargs);
#endif
    vsnprintf(msg, 200, fmt, vargs);
    Py_FatalError(msg);
    va_end(vargs);
}
static CYTHON_INLINE int
__pyx_add_acquisition_count_locked(__pyx_atomic_int *acquisition_count,
                                   PyThread_type_lock lock)
{
    int result;
    PyThread_acquire_lock(lock, 1);
    result = (*acquisition_count)++;
    PyThread_release_lock(lock);
    return result;
}
static CYTHON_INLINE int
__pyx_sub_acquisition_count_locked(__pyx_atomic_int *acquisition_count,
                                   PyThread_type_lock lock)
{
    int result;
    PyThread_acquire_lock(lock, 1);
    result = (*acquisition_count)--;
    PyThread_release_lock(lock);
    return result;
}
static CYTHON_INLINE void
__Pyx_INC_MEMVIEW(__Pyx_memviewslice *memslice, int have_gil, int lineno)
{
    int first_time;
    struct __pyx_memoryview_obj *memview = memslice->memview;
    if (!memview || (PyObject *) memview == Py_None)
        return;
    if (__pyx_get_slice_count(memview) < 0)
        __pyx_fatalerror("Acquisition count is %d (line %d)",
                         __pyx_get_slice_count(memview), lineno);
    first_time = __pyx_add_acquisition_count(memview) == 0;
    if (first_time) {
        if (have_gil) {
            Py_INCREF((PyObject *) memview);
        } else {
            PyGILState_STATE _gilstate = PyGILState_Ensure();
            Py_INCREF((PyObject *) memview);
            PyGILState_Release(_gilstate);
        }
    }
}
static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *memslice,
                                             int have_gil, int lineno) {
    int last_time;
    struct __pyx_memoryview_obj *memview = memslice->memview;
    if (!memview ) {
        return;
    } else if ((PyObject *) memview == Py_None) {
        memslice->memview = NULL;
        return;
    }
    if (__pyx_get_slice_count(memview) <= 0)
        __pyx_fatalerror("Acquisition count is %d (line %d)",
                         __pyx_get_slice_count(memview), lineno);
    last_time = __pyx_sub_acquisition_count(memview) == 1;
    memslice->data = NULL;
    if (last_time) {
        if (have_gil) {
            Py_CLEAR(memslice->memview);
        } else {
            PyGILState_STATE _gilstate = PyGILState_Ensure();
            Py_CLEAR(memslice->memview);
            PyGILState_Release(_gilstate);
        }
    } else {
        memslice->memview = NULL;
    }
}

static void __Pyx_RaiseBufferIndexError(int axis) {
  PyErr_Format(PyExc_IndexError,
     "Out of bounds on buffer access (axis %d)", axis);
}

static CYTHON_INLINE Py_ssize_t __Pyx_mod_Py_ssize_t(Py_ssize_t a, Py_ssize_t b) {
    Py_ssize_t r = a % b;
    r += ((r != 0) & ((r ^ b) < 0)) * b;
    return r;
}

static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
#if CYTHON_COMPILING_IN_PYPY
    return PyObject_RichCompareBool(s1, s2, equals);
#else
    if (s1 == s2) {
        return (equals == Py_EQ);
    } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
        const char *ps1, *ps2;
        Py_ssize_t length = PyBytes_GET_SIZE(s1);
        if (length != PyBytes_GET_SIZE(s2))
            return (equals == Py_NE);
        ps1 = PyBytes_AS_STRING(s1);
        ps2 = PyBytes_AS_STRING(s2);
        if (ps1[0] != ps2[0]) {
            return (equals == Py_NE);
        } else if (length == 1) {
            return (equals == Py_EQ);
        } else {
            int result = memcmp(ps1, ps2, (size_t)length);
            return (equals == Py_EQ) ? (result == 0) : (result != 0);
        }
    } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
        return (equals == Py_NE);
    } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
        return (equals == Py_NE);
    } else {
        int result;
        PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
        if (!py_result)
            return -1;
        result = __Pyx_PyObject_IsTrue(py_result);
        Py_DECREF(py_result);
        return result;
    }
#endif
}

static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
#if CYTHON_COMPILING_IN_PYPY
    return PyObject_RichCompareBool(s1, s2, equals);
#else
#if PY_MAJOR_VERSION < 3
    PyObject* owned_ref = NULL;
#endif
    int s1_is_unicode, s2_is_unicode;
    if (s1 == s2) {
        goto return_eq;
    }
    s1_is_unicode = PyUnicode_CheckExact(s1);
    s2_is_unicode = PyUnicode_CheckExact(s2);
#if PY_MAJOR_VERSION < 3
    if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) {
        owned_ref = PyUnicode_FromObject(s2);
        if (unlikely(!owned_ref))
            return -1;
        s2 = owned_ref;
        s2_is_unicode = 1;
    } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) {
        owned_ref = PyUnicode_FromObject(s1);
        if (unlikely(!owned_ref))
            return -1;
        s1 = owned_ref;
        s1_is_unicode = 1;
    } else if (((!s2_is_unicode) & (!s1_is_unicode))) {
        return __Pyx_PyBytes_Equals(s1, s2, equals);
    }
#endif
    if (s1_is_unicode & s2_is_unicode) {
        Py_ssize_t length;
        int kind;
        void *data1, *data2;
        if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0))
            return -1;
        length = __Pyx_PyUnicode_GET_LENGTH(s1);
        if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) {
            goto return_ne;
        }
        kind = __Pyx_PyUnicode_KIND(s1);
        if (kind != __Pyx_PyUnicode_KIND(s2)) {
            goto return_ne;
        }
        data1 = __Pyx_PyUnicode_DATA(s1);
        data2 = __Pyx_PyUnicode_DATA(s2);
        if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) {
            goto return_ne;
        } else if (length == 1) {
            goto return_eq;
        } else {
            int result = memcmp(data1, data2, (size_t)(length * kind));
            #if PY_MAJOR_VERSION < 3
            Py_XDECREF(owned_ref);
            #endif
            return (equals == Py_EQ) ? (result == 0) : (result != 0);
        }
    } else if ((s1 == Py_None) & s2_is_unicode) {
        goto return_ne;
    } else if ((s2 == Py_None) & s1_is_unicode) {
        goto return_ne;
    } else {
        int result;
        PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
        if (!py_result)
            return -1;
        result = __Pyx_PyObject_IsTrue(py_result);
        Py_DECREF(py_result);
        return result;
    }
return_eq:
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(owned_ref);
    #endif
    return (equals == Py_EQ);
return_ne:
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(owned_ref);
    #endif
    return (equals == Py_NE);
#endif
}

static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t a, Py_ssize_t b) {
    Py_ssize_t q = a / b;
    Py_ssize_t r = a - q*b;
    q -= ((r != 0) & ((r ^ b) < 0));
    return q;
}

static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *o, PyObject *n) {
#if CYTHON_COMPILING_IN_CPYTHON
#if PY_MAJOR_VERSION >= 3
    if (likely(PyUnicode_Check(n)))
#else
    if (likely(PyString_Check(n)))
#endif
        return __Pyx_PyObject_GetAttrStr(o, n);
#endif
    return PyObject_GetAttr(o, n);
}

static CYTHON_INLINE PyObject* __Pyx_decode_c_string(
         const char* cstring, Py_ssize_t start, Py_ssize_t stop,
         const char* encoding, const char* errors,
         PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)) {
    Py_ssize_t length;
    if (unlikely((start < 0) | (stop < 0))) {
        size_t slen = strlen(cstring);
        if (unlikely(slen > (size_t) PY_SSIZE_T_MAX)) {
            PyErr_SetString(PyExc_OverflowError,
                            "c-string too long to convert to Python");
            return NULL;
        }
        length = (Py_ssize_t) slen;
        if (start < 0) {
            start += length;
            if (start < 0)
                start = 0;
        }
        if (stop < 0)
            stop += length;
    }
    length = stop - start;
    if (unlikely(length <= 0))
        return PyUnicode_FromUnicode(NULL, 0);
    cstring += start;
    if (decode_func) {
        return decode_func(cstring, length, errors);
    } else {
        return PyUnicode_Decode(cstring, length, encoding, errors);
    }
}

static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
    PyErr_Format(PyExc_ValueError,
                 "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected);
}

static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
    PyErr_Format(PyExc_ValueError,
                 "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack",
                 index, (index == 1) ? "" : "s");
}

static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
}

static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) {
    if (unlikely(!type)) {
        PyErr_SetString(PyExc_SystemError, "Missing type object");
        return 0;
    }
    if (likely(PyObject_TypeCheck(obj, type)))
        return 1;
    PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s",
                 Py_TYPE(obj)->tp_name, type->tp_name);
    return 0;
}

static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb) {
#if CYTHON_COMPILING_IN_CPYTHON
    PyThreadState *tstate = PyThreadState_GET();
    *type = tstate->exc_type;
    *value = tstate->exc_value;
    *tb = tstate->exc_traceback;
    Py_XINCREF(*type);
    Py_XINCREF(*value);
    Py_XINCREF(*tb);
#else
    PyErr_GetExcInfo(type, value, tb);
#endif
}
static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb) {
#if CYTHON_COMPILING_IN_CPYTHON
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    PyThreadState *tstate = PyThreadState_GET();
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = type;
    tstate->exc_value = value;
    tstate->exc_traceback = tb;
    Py_XDECREF(tmp_type);
    Py_XDECREF(tmp_value);
    Py_XDECREF(tmp_tb);
#else
    PyErr_SetExcInfo(type, value, tb);
#endif
}

static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) {
    PyObject *local_type, *local_value, *local_tb;
#if CYTHON_COMPILING_IN_CPYTHON
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    PyThreadState *tstate = PyThreadState_GET();
    local_type = tstate->curexc_type;
    local_value = tstate->curexc_value;
    local_tb = tstate->curexc_traceback;
    tstate->curexc_type = 0;
    tstate->curexc_value = 0;
    tstate->curexc_traceback = 0;
#else
    PyErr_Fetch(&local_type, &local_value, &local_tb);
#endif
    PyErr_NormalizeException(&local_type, &local_value, &local_tb);
#if CYTHON_COMPILING_IN_CPYTHON
    if (unlikely(tstate->curexc_type))
#else
    if (unlikely(PyErr_Occurred()))
#endif
        goto bad;
    #if PY_MAJOR_VERSION >= 3
    if (local_tb) {
        if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
            goto bad;
    }
    #endif
    Py_XINCREF(local_tb);
    Py_XINCREF(local_type);
    Py_XINCREF(local_value);
    *type = local_type;
    *value = local_value;
    *tb = local_tb;
#if CYTHON_COMPILING_IN_CPYTHON
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = local_type;
    tstate->exc_value = local_value;
    tstate->exc_traceback = local_tb;
    Py_XDECREF(tmp_type);
    Py_XDECREF(tmp_value);
    Py_XDECREF(tmp_tb);
#else
    PyErr_SetExcInfo(local_type, local_value, local_tb);
#endif
    return 0;
bad:
    *type = 0;
    *value = 0;
    *tb = 0;
    Py_XDECREF(local_type);
    Py_XDECREF(local_value);
    Py_XDECREF(local_tb);
    return -1;
}

static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) {
    PyObject *tmp_type, *tmp_value, *tmp_tb;
#if CYTHON_COMPILING_IN_CPYTHON
    PyThreadState *tstate = PyThreadState_GET();
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = *type;
    tstate->exc_value = *value;
    tstate->exc_traceback = *tb;
#else
    PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb);
    PyErr_SetExcInfo(*type, *value, *tb);
#endif
    *type = tmp_type;
    *value = tmp_value;
    *tb = tmp_tb;
}

static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
    PyObject *empty_list = 0;
    PyObject *module = 0;
    PyObject *global_dict = 0;
    PyObject *empty_dict = 0;
    PyObject *list;
    #if PY_VERSION_HEX < 0x03030000
    PyObject *py_import;
    py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
    if (!py_import)
        goto bad;
    #endif
    if (from_list)
        list = from_list;
    else {
        empty_list = PyList_New(0);
        if (!empty_list)
            goto bad;
        list = empty_list;
    }
    global_dict = PyModule_GetDict(__pyx_m);
    if (!global_dict)
        goto bad;
    empty_dict = PyDict_New();
    if (!empty_dict)
        goto bad;
    {
        #if PY_MAJOR_VERSION >= 3
        if (level == -1) {
            if (strchr(__Pyx_MODULE_NAME, '.')) {
                #if PY_VERSION_HEX < 0x03030000
                PyObject *py_level = PyInt_FromLong(1);
                if (!py_level)
                    goto bad;
                module = PyObject_CallFunctionObjArgs(py_import,
                    name, global_dict, empty_dict, list, py_level, NULL);
                Py_DECREF(py_level);
                #else
                module = PyImport_ImportModuleLevelObject(
                    name, global_dict, empty_dict, list, 1);
                #endif
                if (!module) {
                    if (!PyErr_ExceptionMatches(PyExc_ImportError))
                        goto bad;
                    PyErr_Clear();
                }
            }
            level = 0;
        }
        #endif
        if (!module) {
            #if PY_VERSION_HEX < 0x03030000
            PyObject *py_level = PyInt_FromLong(level);
            if (!py_level)
                goto bad;
            module = PyObject_CallFunctionObjArgs(py_import,
                name, global_dict, empty_dict, list, py_level, NULL);
            Py_DECREF(py_level);
            #else
            module = PyImport_ImportModuleLevelObject(
                name, global_dict, empty_dict, list, level);
            #endif
        }
    }
bad:
    #if PY_VERSION_HEX < 0x03030000
    Py_XDECREF(py_import);
    #endif
    Py_XDECREF(empty_list);
    Py_XDECREF(empty_dict);
    return module;
}

#if CYTHON_COMPILING_IN_CPYTHON
static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) {
    #if PY_MAJOR_VERSION < 3
    if (likely(PyInt_CheckExact(op1))) {
        const long b = intval;
        long x;
        long a = PyInt_AS_LONG(op1);
            x = (long)((unsigned long)a + b);
            if (likely((x^a) >= 0 || (x^b) >= 0))
                return PyInt_FromLong(x);
            return PyLong_Type.tp_as_number->nb_add(op1, op2);
    }
    #endif
    #if CYTHON_USE_PYLONG_INTERNALS && PY_MAJOR_VERSION >= 3
    if (likely(PyLong_CheckExact(op1))) {
        const long b = intval;
        long a, x;
        const PY_LONG_LONG llb = intval;
        PY_LONG_LONG lla, llx;
        const digit* digits = ((PyLongObject*)op1)->ob_digit;
        const Py_ssize_t size = Py_SIZE(op1);
        if (likely(__Pyx_sst_abs(size) <= 1)) {
            a = likely(size) ? digits[0] : 0;
            if (size == -1) a = -a;
        } else {
            switch (size) {
                case -2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
                    }
                case 2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
                    }
                case -3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
                    }
                case 3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
                    }
                case -4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
                    }
                case 4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
                    }
                default: return PyLong_Type.tp_as_number->nb_add(op1, op2);
            }
        }
                x = a + b;
            return PyLong_FromLong(x);
        long_long:
                llx = lla + llb;
            return PyLong_FromLongLong(llx);
    }
    #endif
    if (PyFloat_CheckExact(op1)) {
        const long b = intval;
        double a = PyFloat_AS_DOUBLE(op1);
            double result;
            PyFPE_START_PROTECT("add", return NULL)
            result = ((double)a) + (double)b;
            PyFPE_END_PROTECT(result)
            return PyFloat_FromDouble(result);
    }
    return (inplace ? PyNumber_InPlaceAdd : PyNumber_Add)(op1, op2);
}
#endif

static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) {
    PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname);
}

static CYTHON_INLINE long __Pyx_div_long(long a, long b) {
    long q = a / b;
    long r = a - q*b;
    q -= ((r != 0) & ((r ^ b) < 0));
    return q;
}

static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno,
                                  CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename,
                                  int full_traceback, CYTHON_UNUSED int nogil) {
    PyObject *old_exc, *old_val, *old_tb;
    PyObject *ctx;
#ifdef WITH_THREAD
    PyGILState_STATE state;
    if (nogil)
        state = PyGILState_Ensure();
#endif
    __Pyx_ErrFetch(&old_exc, &old_val, &old_tb);
    if (full_traceback) {
        Py_XINCREF(old_exc);
        Py_XINCREF(old_val);
        Py_XINCREF(old_tb);
        __Pyx_ErrRestore(old_exc, old_val, old_tb);
        PyErr_PrintEx(1);
    }
    #if PY_MAJOR_VERSION < 3
    ctx = PyString_FromString(name);
    #else
    ctx = PyUnicode_FromString(name);
    #endif
    __Pyx_ErrRestore(old_exc, old_val, old_tb);
    if (!ctx) {
        PyErr_WriteUnraisable(Py_None);
    } else {
        PyErr_WriteUnraisable(ctx);
        Py_DECREF(ctx);
    }
#ifdef WITH_THREAD
    if (nogil)
        PyGILState_Release(state);
#endif
}

static int __Pyx_SetVtable(PyObject *dict, void *vtable) {
#if PY_VERSION_HEX >= 0x02070000
    PyObject *ob = PyCapsule_New(vtable, 0, 0);
#else
    PyObject *ob = PyCObject_FromVoidPtr(vtable, 0);
#endif
    if (!ob)
        goto bad;
    if (PyDict_SetItem(dict, __pyx_n_s_pyx_vtable, ob) < 0)
        goto bad;
    Py_DECREF(ob);
    return 0;
bad:
    Py_XDECREF(ob);
    return -1;
}

static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) {
    PyObject* value = __Pyx_PyObject_GetAttrStr(module, name);
    if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) {
        PyErr_Format(PyExc_ImportError,
        #if PY_MAJOR_VERSION < 3
            "cannot import name %.230s", PyString_AS_STRING(name));
        #else
            "cannot import name %S", name);
        #endif
    }
    return value;
}

static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
    int start = 0, mid = 0, end = count - 1;
    if (end >= 0 && code_line > entries[end].code_line) {
        return count;
    }
    while (start < end) {
        mid = start + (end - start) / 2;
        if (code_line < entries[mid].code_line) {
            end = mid;
        } else if (code_line > entries[mid].code_line) {
             start = mid + 1;
        } else {
            return mid;
        }
    }
    if (code_line <= entries[mid].code_line) {
        return mid;
    } else {
        return mid + 1;
    }
}
static PyCodeObject *__pyx_find_code_object(int code_line) {
    PyCodeObject* code_object;
    int pos;
    if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
        return NULL;
    }
    pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
    if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
        return NULL;
    }
    code_object = __pyx_code_cache.entries[pos].code_object;
    Py_INCREF(code_object);
    return code_object;
}
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
    int pos, i;
    __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
    if (unlikely(!code_line)) {
        return;
    }
    if (unlikely(!entries)) {
        entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
        if (likely(entries)) {
            __pyx_code_cache.entries = entries;
            __pyx_code_cache.max_count = 64;
            __pyx_code_cache.count = 1;
            entries[0].code_line = code_line;
            entries[0].code_object = code_object;
            Py_INCREF(code_object);
        }
        return;
    }
    pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
    if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
        PyCodeObject* tmp = entries[pos].code_object;
        entries[pos].code_object = code_object;
        Py_DECREF(tmp);
        return;
    }
    if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
        int new_max = __pyx_code_cache.max_count + 64;
        entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
            __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry));
        if (unlikely(!entries)) {
            return;
        }
        __pyx_code_cache.entries = entries;
        __pyx_code_cache.max_count = new_max;
    }
    for (i=__pyx_code_cache.count; i>pos; i--) {
        entries[i] = entries[i-1];
    }
    entries[pos].code_line = code_line;
    entries[pos].code_object = code_object;
    __pyx_code_cache.count++;
    Py_INCREF(code_object);
}

#include "compile.h"
#include "frameobject.h"
#include "traceback.h"
static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
            const char *funcname, int c_line,
            int py_line, const char *filename) {
    PyCodeObject *py_code = 0;
    PyObject *py_srcfile = 0;
    PyObject *py_funcname = 0;
    #if PY_MAJOR_VERSION < 3
    py_srcfile = PyString_FromString(filename);
    #else
    py_srcfile = PyUnicode_FromString(filename);
    #endif
    if (!py_srcfile) goto bad;
    if (c_line) {
        #if PY_MAJOR_VERSION < 3
        py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
        #else
        py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
        #endif
    }
    else {
        #if PY_MAJOR_VERSION < 3
        py_funcname = PyString_FromString(funcname);
        #else
        py_funcname = PyUnicode_FromString(funcname);
        #endif
    }
    if (!py_funcname) goto bad;
    py_code = __Pyx_PyCode_New(
        0,
        0,
        0,
        0,
        0,
        __pyx_empty_bytes, /*PyObject *code,*/
        __pyx_empty_tuple, /*PyObject *consts,*/
        __pyx_empty_tuple, /*PyObject *names,*/
        __pyx_empty_tuple, /*PyObject *varnames,*/
        __pyx_empty_tuple, /*PyObject *freevars,*/
        __pyx_empty_tuple, /*PyObject *cellvars,*/
        py_srcfile,   /*PyObject *filename,*/
        py_funcname,  /*PyObject *name,*/
        py_line,
        __pyx_empty_bytes  /*PyObject *lnotab*/
    );
    Py_DECREF(py_srcfile);
    Py_DECREF(py_funcname);
    return py_code;
bad:
    Py_XDECREF(py_srcfile);
    Py_XDECREF(py_funcname);
    return NULL;
}
static void __Pyx_AddTraceback(const char *funcname, int c_line,
                               int py_line, const char *filename) {
    PyCodeObject *py_code = 0;
    PyFrameObject *py_frame = 0;
    py_code = __pyx_find_code_object(c_line ? c_line : py_line);
    if (!py_code) {
        py_code = __Pyx_CreateCodeObjectForTraceback(
            funcname, c_line, py_line, filename);
        if (!py_code) goto bad;
        __pyx_insert_code_object(c_line ? c_line : py_line, py_code);
    }
    py_frame = PyFrame_New(
        PyThreadState_GET(), /*PyThreadState *tstate,*/
        py_code,             /*PyCodeObject *code,*/
        __pyx_d,      /*PyObject *globals,*/
        0                    /*PyObject *locals*/
    );
    if (!py_frame) goto bad;
    py_frame->f_lineno = py_line;
    PyTraceBack_Here(py_frame);
bad:
    Py_XDECREF(py_code);
    Py_XDECREF(py_frame);
}

#if PY_MAJOR_VERSION < 3
static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) {
    if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags);
        if (PyObject_TypeCheck(obj, __pyx_array_type)) return __pyx_array_getbuffer(obj, view, flags);
        if (PyObject_TypeCheck(obj, __pyx_memoryview_type)) return __pyx_memoryview_getbuffer(obj, view, flags);
    PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name);
    return -1;
}
static void __Pyx_ReleaseBuffer(Py_buffer *view) {
    PyObject *obj = view->obj;
    if (!obj) return;
    if (PyObject_CheckBuffer(obj)) {
        PyBuffer_Release(view);
        return;
    }
    Py_DECREF(obj);
    view->obj = NULL;
}
#endif


        #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
    __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
    __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
    {\
        func_type value = func_value;\
        if (sizeof(target_type) < sizeof(func_type)) {\
            if (unlikely(value != (func_type) (target_type) value)) {\
                func_type zero = 0;\
                if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
                    return (target_type) -1;\
                if (is_unsigned && unlikely(value < zero))\
                    goto raise_neg_overflow;\
                else\
                    goto raise_overflow;\
            }\
        }\
        return (target_type) value;\
    }

static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
    const int neg_one = (int) -1, const_zero = (int) 0;
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(int) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (int) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (int) 0;
                case  1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0])
                case 2:
                    if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) {
                            return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) {
                            return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) {
                            return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (int) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(int) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x))
            } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (int) 0;
                case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, -(sdigit) digits[0])
                case  1: __PYX_VERIFY_RETURN_INT(int,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                            return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                            return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
                            return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(int) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x))
            } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x))
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            int val;
            PyObject *v = __Pyx_PyNumber_Int(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (int) -1;
        }
    } else {
        int val;
        PyObject *tmp = __Pyx_PyNumber_Int(x);
        if (!tmp) return (int) -1;
        val = __Pyx_PyInt_As_int(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to int");
    return (int) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to int");
    return (int) -1;
}

static int
__pyx_typeinfo_cmp(__Pyx_TypeInfo *a, __Pyx_TypeInfo *b)
{
    int i;
    if (!a || !b)
        return 0;
    if (a == b)
        return 1;
    if (a->size != b->size || a->typegroup != b->typegroup ||
            a->is_unsigned != b->is_unsigned || a->ndim != b->ndim) {
        if (a->typegroup == 'H' || b->typegroup == 'H') {
            return a->size == b->size;
        } else {
            return 0;
        }
    }
    if (a->ndim) {
        for (i = 0; i < a->ndim; i++)
            if (a->arraysize[i] != b->arraysize[i])
                return 0;
    }
    if (a->typegroup == 'S') {
        if (a->flags != b->flags)
            return 0;
        if (a->fields || b->fields) {
            if (!(a->fields && b->fields))
                return 0;
            for (i = 0; a->fields[i].type && b->fields[i].type; i++) {
                __Pyx_StructField *field_a = a->fields + i;
                __Pyx_StructField *field_b = b->fields + i;
                if (field_a->offset != field_b->offset ||
                    !__pyx_typeinfo_cmp(field_a->type, field_b->type))
                    return 0;
            }
            return !a->fields[i].type && !b->fields[i].type;
        }
    }
    return 1;
}

static int
__pyx_check_strides(Py_buffer *buf, int dim, int ndim, int spec)
{
    if (buf->shape[dim] <= 1)
        return 1;
    if (buf->strides) {
        if (spec & __Pyx_MEMVIEW_CONTIG) {
            if (spec & (__Pyx_MEMVIEW_PTR|__Pyx_MEMVIEW_FULL)) {
                if (buf->strides[dim] != sizeof(void *)) {
                    PyErr_Format(PyExc_ValueError,
                                 "Buffer is not indirectly contiguous "
                                 "in dimension %d.", dim);
                    goto fail;
                }
            } else if (buf->strides[dim] != buf->itemsize) {
                PyErr_SetString(PyExc_ValueError,
                                "Buffer and memoryview are not contiguous "
                                "in the same dimension.");
                goto fail;
            }
        }
        if (spec & __Pyx_MEMVIEW_FOLLOW) {
            Py_ssize_t stride = buf->strides[dim];
            if (stride < 0)
                stride = -stride;
            if (stride < buf->itemsize) {
                PyErr_SetString(PyExc_ValueError,
                                "Buffer and memoryview are not contiguous "
                                "in the same dimension.");
                goto fail;
            }
        }
    } else {
        if (spec & __Pyx_MEMVIEW_CONTIG && dim != ndim - 1) {
            PyErr_Format(PyExc_ValueError,
                         "C-contiguous buffer is not contiguous in "
                         "dimension %d", dim);
            goto fail;
        } else if (spec & (__Pyx_MEMVIEW_PTR)) {
            PyErr_Format(PyExc_ValueError,
                         "C-contiguous buffer is not indirect in "
                         "dimension %d", dim);
            goto fail;
        } else if (buf->suboffsets) {
            PyErr_SetString(PyExc_ValueError,
                            "Buffer exposes suboffsets but no strides");
            goto fail;
        }
    }
    return 1;
fail:
    return 0;
}
static int
__pyx_check_suboffsets(Py_buffer *buf, int dim, CYTHON_UNUSED int ndim, int spec)
{
    if (spec & __Pyx_MEMVIEW_DIRECT) {
        if (buf->suboffsets && buf->suboffsets[dim] >= 0) {
            PyErr_Format(PyExc_ValueError,
                         "Buffer not compatible with direct access "
                         "in dimension %d.", dim);
            goto fail;
        }
    }
    if (spec & __Pyx_MEMVIEW_PTR) {
        if (!buf->suboffsets || (buf->suboffsets && buf->suboffsets[dim] < 0)) {
            PyErr_Format(PyExc_ValueError,
                         "Buffer is not indirectly accessible "
                         "in dimension %d.", dim);
            goto fail;
        }
    }
    return 1;
fail:
    return 0;
}
static int
__pyx_verify_contig(Py_buffer *buf, int ndim, int c_or_f_flag)
{
    int i;
    if (c_or_f_flag & __Pyx_IS_F_CONTIG) {
        Py_ssize_t stride = 1;
        for (i = 0; i < ndim; i++) {
            if (stride * buf->itemsize != buf->strides[i] &&
                    buf->shape[i] > 1)
            {
                PyErr_SetString(PyExc_ValueError,
                    "Buffer not fortran contiguous.");
                goto fail;
            }
            stride = stride * buf->shape[i];
        }
    } else if (c_or_f_flag & __Pyx_IS_C_CONTIG) {
        Py_ssize_t stride = 1;
        for (i = ndim - 1; i >- 1; i--) {
            if (stride * buf->itemsize != buf->strides[i] &&
                    buf->shape[i] > 1) {
                PyErr_SetString(PyExc_ValueError,
                    "Buffer not C contiguous.");
                goto fail;
            }
            stride = stride * buf->shape[i];
        }
    }
    return 1;
fail:
    return 0;
}
static int __Pyx_ValidateAndInit_memviewslice(
                int *axes_specs,
                int c_or_f_flag,
                int buf_flags,
                int ndim,
                __Pyx_TypeInfo *dtype,
                __Pyx_BufFmt_StackElem stack[],
                __Pyx_memviewslice *memviewslice,
                PyObject *original_obj)
{
    struct __pyx_memoryview_obj *memview, *new_memview;
    __Pyx_RefNannyDeclarations
    Py_buffer *buf;
    int i, spec = 0, retval = -1;
    __Pyx_BufFmt_Context ctx;
    int from_memoryview = __pyx_memoryview_check(original_obj);
    __Pyx_RefNannySetupContext("ValidateAndInit_memviewslice", 0);
    if (from_memoryview && __pyx_typeinfo_cmp(dtype, ((struct __pyx_memoryview_obj *)
                                                            original_obj)->typeinfo)) {
        memview = (struct __pyx_memoryview_obj *) original_obj;
        new_memview = NULL;
    } else {
        memview = (struct __pyx_memoryview_obj *) __pyx_memoryview_new(
                                            original_obj, buf_flags, 0, dtype);
        new_memview = memview;
        if (unlikely(!memview))
            goto fail;
    }
    buf = &memview->view;
    if (buf->ndim != ndim) {
        PyErr_Format(PyExc_ValueError,
                "Buffer has wrong number of dimensions (expected %d, got %d)",
                ndim, buf->ndim);
        goto fail;
    }
    if (new_memview) {
        __Pyx_BufFmt_Init(&ctx, stack, dtype);
        if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail;
    }
    if ((unsigned) buf->itemsize != dtype->size) {
        PyErr_Format(PyExc_ValueError,
                     "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "u byte%s) "
                     "does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "u byte%s)",
                     buf->itemsize,
                     (buf->itemsize > 1) ? "s" : "",
                     dtype->name,
                     dtype->size,
                     (dtype->size > 1) ? "s" : "");
        goto fail;
    }
    for (i = 0; i < ndim; i++) {
        spec = axes_specs[i];
        if (!__pyx_check_strides(buf, i, ndim, spec))
            goto fail;
        if (!__pyx_check_suboffsets(buf, i, ndim, spec))
            goto fail;
    }
    if (buf->strides && !__pyx_verify_contig(buf, ndim, c_or_f_flag))
        goto fail;
    if (unlikely(__Pyx_init_memviewslice(memview, ndim, memviewslice,
                                         new_memview != NULL) == -1)) {
        goto fail;
    }
    retval = 0;
    goto no_fail;
fail:
    Py_XDECREF(new_memview);
    retval = -1;
no_fail:
    __Pyx_RefNannyFinishContext();
    return retval;
}

static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_d_d_dc_float(PyObject *obj) {
    __Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
    __Pyx_BufFmt_StackElem stack[1];
    int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_FOLLOW), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_FOLLOW), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG) };
    int retcode;
    if (obj == Py_None) {
        result.memview = (struct __pyx_memoryview_obj *) Py_None;
        return result;
    }
    retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_C_CONTIG,
                                                 (PyBUF_C_CONTIGUOUS | PyBUF_FORMAT | PyBUF_WRITABLE), 3,
                                                 &__Pyx_TypeInfo_float, stack,
                                                 &result, obj);
    if (unlikely(retcode == -1))
        goto __pyx_fail;
    return result;
__pyx_fail:
    result.memview = NULL;
    result.data = NULL;
    return result;
}

static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dc_float(PyObject *obj) {
    __Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
    __Pyx_BufFmt_StackElem stack[1];
    int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_CONTIG) };
    int retcode;
    if (obj == Py_None) {
        result.memview = (struct __pyx_memoryview_obj *) Py_None;
        return result;
    }
    retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, __Pyx_IS_C_CONTIG,
                                                 (PyBUF_C_CONTIGUOUS | PyBUF_FORMAT | PyBUF_WRITABLE), 1,
                                                 &__Pyx_TypeInfo_float, stack,
                                                 &result, obj);
    if (unlikely(retcode == -1))
        goto __pyx_fail;
    return result;
__pyx_fail:
    result.memview = NULL;
    result.data = NULL;
    return result;
}

static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
    const long neg_one = (long) -1, const_zero = (long) 0;
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(long) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(long) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
        } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
        }
    } else {
        if (sizeof(long) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(long),
                                     little, !is_unsigned);
    }
}

static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
    const int neg_one = (int) -1, const_zero = (int) 0;
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(int) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(int) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
        } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
        }
    } else {
        if (sizeof(int) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(int),
                                     little, !is_unsigned);
    }
}

static PyObject *__pyx_memview_get_float(const char *itemp) {
    return (PyObject *) PyFloat_FromDouble(*(float *) itemp);
}
static int __pyx_memview_set_float(const char *itemp, PyObject *obj) {
    float value = __pyx_PyFloat_AsFloat(obj);
    if ((value == (float)-1) && PyErr_Occurred())
        return 0;
    *(float *) itemp = value;
    return 1;
}

static int
__pyx_memviewslice_is_contig(const __Pyx_memviewslice *mvs,
                             char order, int ndim)
{
    int i, index, step, start;
    Py_ssize_t itemsize = mvs->memview->view.itemsize;
    if (order == 'F') {
        step = 1;
        start = 0;
    } else {
        step = -1;
        start = ndim - 1;
    }
    for (i = 0; i < ndim; i++) {
        index = start + step * i;
        if (mvs->suboffsets[index] >= 0 || mvs->strides[index] != itemsize)
            return 0;
        itemsize *= mvs->shape[index];
    }
    return 1;
}

static void
__pyx_get_array_memory_extents(__Pyx_memviewslice *slice,
                               void **out_start, void **out_end,
                               int ndim, size_t itemsize)
{
    char *start, *end;
    int i;
    start = end = slice->data;
    for (i = 0; i < ndim; i++) {
        Py_ssize_t stride = slice->strides[i];
        Py_ssize_t extent = slice->shape[i];
        if (extent == 0) {
            *out_start = *out_end = start;
            return;
        } else {
            if (stride > 0)
                end += stride * (extent - 1);
            else
                start += stride * (extent - 1);
        }
    }
    *out_start = start;
    *out_end = end + itemsize;
}
static int
__pyx_slices_overlap(__Pyx_memviewslice *slice1,
                     __Pyx_memviewslice *slice2,
                     int ndim, size_t itemsize)
{
    void *start1, *end1, *start2, *end2;
    __pyx_get_array_memory_extents(slice1, &start1, &end1, ndim, itemsize);
    __pyx_get_array_memory_extents(slice2, &start2, &end2, ndim, itemsize);
    return (start1 < end2) && (start2 < end1);
}

static __Pyx_memviewslice
__pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs,
                                 const char *mode, int ndim,
                                 size_t sizeof_dtype, int contig_flag,
                                 int dtype_is_object)
{
    __Pyx_RefNannyDeclarations
    int i;
    __Pyx_memviewslice new_mvs = { 0, 0, { 0 }, { 0 }, { 0 } };
    struct __pyx_memoryview_obj *from_memview = from_mvs->memview;
    Py_buffer *buf = &from_memview->view;
    PyObject *shape_tuple = NULL;
    PyObject *temp_int = NULL;
    struct __pyx_array_obj *array_obj = NULL;
    struct __pyx_memoryview_obj *memview_obj = NULL;
    __Pyx_RefNannySetupContext("__pyx_memoryview_copy_new_contig", 0);
    for (i = 0; i < ndim; i++) {
        if (from_mvs->suboffsets[i] >= 0) {
            PyErr_Format(PyExc_ValueError, "Cannot copy memoryview slice with "
                                           "indirect dimensions (axis %d)", i);
            goto fail;
        }
    }
    shape_tuple = PyTuple_New(ndim);
    if (unlikely(!shape_tuple)) {
        goto fail;
    }
    __Pyx_GOTREF(shape_tuple);
    for(i = 0; i < ndim; i++) {
        temp_int = PyInt_FromSsize_t(from_mvs->shape[i]);
        if(unlikely(!temp_int)) {
            goto fail;
        } else {
            PyTuple_SET_ITEM(shape_tuple, i, temp_int);
            temp_int = NULL;
        }
    }
    array_obj = __pyx_array_new(shape_tuple, sizeof_dtype, buf->format, (char *) mode, NULL);
    if (unlikely(!array_obj)) {
        goto fail;
    }
    __Pyx_GOTREF(array_obj);
    memview_obj = (struct __pyx_memoryview_obj *) __pyx_memoryview_new(
                                    (PyObject *) array_obj, contig_flag,
                                    dtype_is_object,
                                    from_mvs->memview->typeinfo);
    if (unlikely(!memview_obj))
        goto fail;
    if (unlikely(__Pyx_init_memviewslice(memview_obj, ndim, &new_mvs, 1) < 0))
        goto fail;
    if (unlikely(__pyx_memoryview_copy_contents(*from_mvs, new_mvs, ndim, ndim,
                                                dtype_is_object) < 0))
        goto fail;
    goto no_fail;
fail:
    __Pyx_XDECREF(new_mvs.memview);
    new_mvs.memview = NULL;
    new_mvs.data = NULL;
no_fail:
    __Pyx_XDECREF(shape_tuple);
    __Pyx_XDECREF(temp_int);
    __Pyx_XDECREF(array_obj);
    __Pyx_RefNannyFinishContext();
    return new_mvs;
}

static CYTHON_INLINE PyObject *
__pyx_capsule_create(void *p, CYTHON_UNUSED const char *sig)
{
    PyObject *cobj;
#if PY_VERSION_HEX >= 0x02070000
    cobj = PyCapsule_New(p, sig, NULL);
#else
    cobj = PyCObject_FromVoidPtr(p, NULL);
#endif
    return cobj;
}

static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *x) {
    const char neg_one = (char) -1, const_zero = (char) 0;
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(char) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(char, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (char) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (char) 0;
                case  1: __PYX_VERIFY_RETURN_INT(char, digit, digits[0])
                case 2:
                    if (8 * sizeof(char) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) >= 2 * PyLong_SHIFT) {
                            return (char) (((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(char) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) >= 3 * PyLong_SHIFT) {
                            return (char) (((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(char) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) >= 4 * PyLong_SHIFT) {
                            return (char) (((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (char) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(char) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(char, unsigned long, PyLong_AsUnsignedLong(x))
            } else if (sizeof(char) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(char, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (char) 0;
                case -1: __PYX_VERIFY_RETURN_INT(char, sdigit, -(sdigit) digits[0])
                case  1: __PYX_VERIFY_RETURN_INT(char,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(char) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) {
                            return (char) (((char)-1)*(((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(char) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) {
                            return (char) ((((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) {
                            return (char) (((char)-1)*(((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(char) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) {
                            return (char) ((((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 4 * PyLong_SHIFT) {
                            return (char) (((char)-1)*(((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(char) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 4 * PyLong_SHIFT) {
                            return (char) ((((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(char) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(char, long, PyLong_AsLong(x))
            } else if (sizeof(char) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(char, PY_LONG_LONG, PyLong_AsLongLong(x))
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            char val;
            PyObject *v = __Pyx_PyNumber_Int(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (char) -1;
        }
    } else {
        char val;
        PyObject *tmp = __Pyx_PyNumber_Int(x);
        if (!tmp) return (char) -1;
        val = __Pyx_PyInt_As_char(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to char");
    return (char) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to char");
    return (char) -1;
}

static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
    const long neg_one = (long) -1, const_zero = (long) 0;
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(long) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (long) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (long) 0;
                case  1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0])
                case 2:
                    if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) {
                            return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) {
                            return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) {
                            return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (long) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(long) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x))
            } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (long) 0;
                case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, -(sdigit) digits[0])
                case  1: __PYX_VERIFY_RETURN_INT(long,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                            return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                            return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                            return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(long) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x))
            } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x))
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            long val;
            PyObject *v = __Pyx_PyNumber_Int(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (long) -1;
        }
    } else {
        long val;
        PyObject *tmp = __Pyx_PyNumber_Int(x);
        if (!tmp) return (long) -1;
        val = __Pyx_PyInt_As_long(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to long");
    return (long) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to long");
    return (long) -1;
}

static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dsdsds_float(PyObject *obj) {
    __Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
    __Pyx_BufFmt_StackElem stack[1];
    int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_STRIDED), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_STRIDED), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_STRIDED) };
    int retcode;
    if (obj == Py_None) {
        result.memview = (struct __pyx_memoryview_obj *) Py_None;
        return result;
    }
    retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, 0,
                                                 PyBUF_RECORDS, 3,
                                                 &__Pyx_TypeInfo_float, stack,
                                                 &result, obj);
    if (unlikely(retcode == -1))
        goto __pyx_fail;
    return result;
__pyx_fail:
    result.memview = NULL;
    result.data = NULL;
    return result;
}

static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dsds_float(PyObject *obj) {
    __Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
    __Pyx_BufFmt_StackElem stack[1];
    int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_STRIDED), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_STRIDED) };
    int retcode;
    if (obj == Py_None) {
        result.memview = (struct __pyx_memoryview_obj *) Py_None;
        return result;
    }
    retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, 0,
                                                 PyBUF_RECORDS, 2,
                                                 &__Pyx_TypeInfo_float, stack,
                                                 &result, obj);
    if (unlikely(retcode == -1))
        goto __pyx_fail;
    return result;
__pyx_fail:
    result.memview = NULL;
    result.data = NULL;
    return result;
}

static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_ds_float(PyObject *obj) {
    __Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
    __Pyx_BufFmt_StackElem stack[1];
    int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_STRIDED) };
    int retcode;
    if (obj == Py_None) {
        result.memview = (struct __pyx_memoryview_obj *) Py_None;
        return result;
    }
    retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, 0,
                                                 PyBUF_RECORDS, 1,
                                                 &__Pyx_TypeInfo_float, stack,
                                                 &result, obj);
    if (unlikely(retcode == -1))
        goto __pyx_fail;
    return result;
__pyx_fail:
    result.memview = NULL;
    result.data = NULL;
    return result;
}

static int __Pyx_check_binary_version(void) {
    char ctversion[4], rtversion[4];
    PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
    PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion());
    if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) {
        char message[200];
        PyOS_snprintf(message, sizeof(message),
                      "compiletime version %s of module '%.100s' "
                      "does not match runtime version %s",
                      ctversion, __Pyx_MODULE_NAME, rtversion);
        return PyErr_WarnEx(NULL, message, 1);
    }
    return 0;
}

#ifndef __PYX_HAVE_RT_ImportModule
#define __PYX_HAVE_RT_ImportModule
static PyObject *__Pyx_ImportModule(const char *name) {
    PyObject *py_name = 0;
    PyObject *py_module = 0;
    py_name = __Pyx_PyIdentifier_FromString(name);
    if (!py_name)
        goto bad;
    py_module = PyImport_Import(py_name);
    Py_DECREF(py_name);
    return py_module;
bad:
    Py_XDECREF(py_name);
    return 0;
}
#endif

#ifndef __PYX_HAVE_RT_ImportType
#define __PYX_HAVE_RT_ImportType
static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name,
    size_t size, int strict)
{
    PyObject *py_module = 0;
    PyObject *result = 0;
    PyObject *py_name = 0;
    char warning[200];
    Py_ssize_t basicsize;
#ifdef Py_LIMITED_API
    PyObject *py_basicsize;
#endif
    py_module = __Pyx_ImportModule(module_name);
    if (!py_module)
        goto bad;
    py_name = __Pyx_PyIdentifier_FromString(class_name);
    if (!py_name)
        goto bad;
    result = PyObject_GetAttr(py_module, py_name);
    Py_DECREF(py_name);
    py_name = 0;
    Py_DECREF(py_module);
    py_module = 0;
    if (!result)
        goto bad;
    if (!PyType_Check(result)) {
        PyErr_Format(PyExc_TypeError,
            "%.200s.%.200s is not a type object",
            module_name, class_name);
        goto bad;
    }
#ifndef Py_LIMITED_API
    basicsize = ((PyTypeObject *)result)->tp_basicsize;
#else
    py_basicsize = PyObject_GetAttrString(result, "__basicsize__");
    if (!py_basicsize)
        goto bad;
    basicsize = PyLong_AsSsize_t(py_basicsize);
    Py_DECREF(py_basicsize);
    py_basicsize = 0;
    if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred())
        goto bad;
#endif
    if (!strict && (size_t)basicsize > size) {
        PyOS_snprintf(warning, sizeof(warning),
            "%s.%s size changed, may indicate binary incompatibility",
            module_name, class_name);
        if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
    }
    else if ((size_t)basicsize != size) {
        PyErr_Format(PyExc_ValueError,
            "%.200s.%.200s has the wrong size, try recompiling",
            module_name, class_name);
        goto bad;
    }
    return (PyTypeObject *)result;
bad:
    Py_XDECREF(py_module);
    Py_XDECREF(result);
    return NULL;
}
#endif

static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
    while (t->p) {
        #if PY_MAJOR_VERSION < 3
        if (t->is_unicode) {
            *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
        } else if (t->intern) {
            *t->p = PyString_InternFromString(t->s);
        } else {
            *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
        }
        #else
        if (t->is_unicode | t->is_str) {
            if (t->intern) {
                *t->p = PyUnicode_InternFromString(t->s);
            } else if (t->encoding) {
                *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
            } else {
                *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
            }
        } else {
            *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
        }
        #endif
        if (!*t->p)
            return -1;
        ++t;
    }
    return 0;
}

static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
    return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str));
}
static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) {
    Py_ssize_t ignore;
    return __Pyx_PyObject_AsStringAndSize(o, &ignore);
}
static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
#if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT)
    if (
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
            __Pyx_sys_getdefaultencoding_not_ascii &&
#endif
            PyUnicode_Check(o)) {
#if PY_VERSION_HEX < 0x03030000
        char* defenc_c;
        PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
        if (!defenc) return NULL;
        defenc_c = PyBytes_AS_STRING(defenc);
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
        {
            char* end = defenc_c + PyBytes_GET_SIZE(defenc);
            char* c;
            for (c = defenc_c; c < end; c++) {
                if ((unsigned char) (*c) >= 128) {
                    PyUnicode_AsASCIIString(o);
                    return NULL;
                }
            }
        }
#endif
        *length = PyBytes_GET_SIZE(defenc);
        return defenc_c;
#else
        if (__Pyx_PyUnicode_READY(o) == -1) return NULL;
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
        if (PyUnicode_IS_ASCII(o)) {
            *length = PyUnicode_GET_LENGTH(o);
            return PyUnicode_AsUTF8(o);
        } else {
            PyUnicode_AsASCIIString(o);
            return NULL;
        }
#else
        return PyUnicode_AsUTF8AndSize(o, length);
#endif
#endif
    } else
#endif
#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))
    if (PyByteArray_Check(o)) {
        *length = PyByteArray_GET_SIZE(o);
        return PyByteArray_AS_STRING(o);
    } else
#endif
    {
        char* result;
        int r = PyBytes_AsStringAndSize(o, &result, length);
        if (unlikely(r < 0)) {
            return NULL;
        } else {
            return result;
        }
    }
}
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
   int is_true = x == Py_True;
   if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
   else return PyObject_IsTrue(x);
}
static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) {
  PyNumberMethods *m;
  const char *name = NULL;
  PyObject *res = NULL;
#if PY_MAJOR_VERSION < 3
  if (PyInt_Check(x) || PyLong_Check(x))
#else
  if (PyLong_Check(x))
#endif
    return __Pyx_NewRef(x);
  m = Py_TYPE(x)->tp_as_number;
#if PY_MAJOR_VERSION < 3
  if (m && m->nb_int) {
    name = "int";
    res = PyNumber_Int(x);
  }
  else if (m && m->nb_long) {
    name = "long";
    res = PyNumber_Long(x);
  }
#else
  if (m && m->nb_int) {
    name = "int";
    res = PyNumber_Long(x);
  }
#endif
  if (res) {
#if PY_MAJOR_VERSION < 3
    if (!PyInt_Check(res) && !PyLong_Check(res)) {
#else
    if (!PyLong_Check(res)) {
#endif
      PyErr_Format(PyExc_TypeError,
                   "__%.4s__ returned non-%.4s (type %.200s)",
                   name, name, Py_TYPE(res)->tp_name);
      Py_DECREF(res);
      return NULL;
    }
  }
  else if (!PyErr_Occurred()) {
    PyErr_SetString(PyExc_TypeError,
                    "an integer is required");
  }
  return res;
}
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
  Py_ssize_t ival;
  PyObject *x;
#if PY_MAJOR_VERSION < 3
  if (likely(PyInt_CheckExact(b))) {
    if (sizeof(Py_ssize_t) >= sizeof(long))
        return PyInt_AS_LONG(b);
    else
        return PyInt_AsSsize_t(x);
  }
#endif
  if (likely(PyLong_CheckExact(b))) {
    #if CYTHON_USE_PYLONG_INTERNALS
    const digit* digits = ((PyLongObject*)b)->ob_digit;
    const Py_ssize_t size = Py_SIZE(b);
    if (likely(__Pyx_sst_abs(size) <= 1)) {
        ival = likely(size) ? digits[0] : 0;
        if (size == -1) ival = -ival;
        return ival;
    } else {
      switch (size) {
         case 2:
           if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -2:
           if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case 3:
           if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -3:
           if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case 4:
           if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -4:
           if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
      }
    }
    #endif
    return PyLong_AsSsize_t(b);
  }
  x = PyNumber_Index(b);
  if (!x) return -1;
  ival = PyInt_AsSsize_t(x);
  Py_DECREF(x);
  return ival;
}
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
    return PyInt_FromSize_t(ival);
}


#endif /* Py_PYTHON_H */
