PK;GNZ=?ccal/ALMOST_ZERO.pyK+U+-T-/*QHKrr Wj'h甖dqPK4*NX5ccal/BAD_VARIANT_IDS.pysrts t t VUPSPK4*NWccal/CODON_TO_AMINO_ACID.py]RNP +$QBh!hu{dN zo~^7cW] g>Lx?'sgxogCrb~58;u#:o7?6O/w4/q(PK4*N!ccal/COLOR_CATEGORICAL.pyU B1 w⠋C^9qM m?ɟd^n9rΧt덃?̀QBGU!W&$͊ t,E >QRG+ Jl"7lFmͨ>AcszxF$#13듧C3ٖxc PK4*NhzK.,ccal/COLOR_RUBY_EMERALD.pys uwu rqQUPRNK34PQPR62HLJTPK4*NI^-+ccal/COLOR_WHITE_BLACK.pys qwqtVUPRNMJ3K3WQPR647414RPK4*N K-+ccal/COLOR_WHITE_BROWN.pys qw SUPRNMJ3K3WQPR60L22SPK4*NJ[WZccal/DATA_DIRECTORY_PATH.pyK+U/+H,P-/*QH,KMrq qw rup PUPOI,ITK/M,рjшOIPK9NN_+CAnx^wv$ A4¹)S-.ӹs.(iQ gI;$D& v^z~4T-iG4,yv ZÚ@F RZl0Fq^zc 3WM,KYKҩfzvb_'_ 3wR`A8"'ˋxCUl_kzجΰ:zdtgJe=EKlcɊ&J2- #:y)7eS$' b>y}QPr6WhQ. \KSȃ |3;zbh=+ZU6y Ǔr[Tb|˯m$\kɱ5:eE,ɦ<+`΄^@\&tD2(5uu%p9u9+ڌ+˔8${pۊ.JX YNک'y!w1=^J0ɛ`~D}W,g7(e4VF>Wq2*h\[CvSRROGBY`6!?JԎklՊnk "LQץܙ3.%2\vx;o8uDUbڵku.Ǘ_/_dc{^`la\ mtUAU^ңmvnW+Xe'ԳYdz[ۖ25gwz6Pq16`ٷv"ڻ]w>:|8MtM?y{Rn78PK9NN>ό 0Pccal/GPSMap.pyko6AP}Ҵ= w)ڠJYo#38N"W 9P橗5iqڋz$xqU5WQ}*K*=0xѤW<;^0ª滰/ÔB˘V-PӖwTa2$lllO{BxMXC^g-֖YFÄdyDЄ4IWq@4dzu#K e0 b$ HuG}4ڇ5xgW4y3ks)&EQ8eEr"& N\F$,T*t fl/^L=}?}VCӢ)3!$%LM L@'JnP$ k.8k# *> }-gg`a#{wٙ\\$6O,oj!y-gawoFuy]~uy&~)v=xs; iQ|*61oσ9J(܁GvPJEcוyJ*Jrwqy)4\!Gk#-Ma cY^MjLc@`ZL›H3| >;WQBf01 1 [2PSr88̮3 wZW b 5>S h2}XI3a0w-[+>ZlqlS%vv6"z|_0IZ@tupkxtp.[Ѐܣe:wlRj͜a3݉Pj{M4ÆxIJ)[3r~;ƓFlnzػɭURnF|wIS}^0u\'4Xtq#pI pF:Hþܒ1ҵWGêp-pE5k'yj0W%U :`Dg@ģ?vwCLy-}]-AsȌR8&4NI;IvqvbjvbD;!KhTus|}]kC8?XA;5ր 04%kyNᢎ "f .> SEgC/ss PĥAs DX5%Q]auvhfl!L KxeFʋ<'"wb8~xHݹ)ϊlǥ}&Y4FN)ќ>ãrl}K~G37LMP/R83L4#seXJFBw /(Zo"cy]4!q[I"zy^-q#b}=ZoOeO? S/U,̼GBT&]:qe#L30vt n,~qdZ›<S#Un]lӈ8agONm,N lIlͻ=pTqZ$U65=pC˚F7Y{C/6[OI0UNxSWhmr,_aa҇O<[QfVo gu+''z Gyy>.PdXoql ƙY@7̄qVnfMH|NG[Hw8Yd0y3dN`ꒃUkfRMkp[]gՊ-kV0$q~\'!G{~néKY"e,g9!xeNRO'Rnk=p8*ziRf;]ViP|%l\ZΌ%x_Zsjs斯]q 0\E{+.56ndI1 %GiW^7G-I ž뢼}y].}N~!OM=l'bGzVy=6 APnA 0hNp+f] {2m}dpcfD<+.oAH賆B2GEn%0@6C/&TM5TF[c5bKJ4fzw2FeEJ:'ie# H ۹6g#E1`MB@5%vk%蔑c.*+rKQho6߶m;|b.3UpcyNEdO(F#ǁ*9QqJk߿u.f29 c; #i1ld^  {eIWxپbMO"J}wB=M]^=''lzbw؃SOӒٳϫԓ%8zbwp*j !gO |3q<;p'6 vQ w7X;Sz3lֽz0h[pĖݦ}1?pޘ$E@1#Rz;t]i1M)"],/R|&&PK9NNn?ccal/Genome.pyWk1 _a)F_4i˶=`wrlkO}_ڦcz,Kߐ?Xm\(<;km笯 3!dF $!+I8R<[\V$E5oJFϖʦh`GIjߖ\@j&=G(eS G&+HQ@ZWI<}нsۗ2^ΟmL,*DO8N7A=J]۠Hrzg fy`~/&mY#QD.fPٯ֙s%@c>:MwX3$!f>2@U,~he*[F,ƃYݠIdX$&4F[[A˅3 202%CfnԔ+Jۜ0V n/6{}@]^JSЕncrɦydL>~*38=O/]|Ŷ>I| =Qk cp-_tT|sxi9.k%6÷¬12q"1ʎ'.G\}HߐHe1eP8B1b&5@S%Q2bz{4!raI\k9g([(k98n푊hR1EQ̛$ziT6aE'~U1vMg:fjTįN6p7E&'Iu5V}TN_Zɉ S5>aֲkv...q>Z8}9~>K_n~f7WېT-HD,]hHO8?|uˠ[.Y،$rumSu}k2*5^-'zc/PK4*NM\K,ccal/VARIANT_CLASSIFICATION_MUTSIG_EFFECT.py}o0yZlف&EMAkڲ,߇CCA3E( z`"(Zc;6:6̸(J*,ld% Sl3gso;05̂!%**!A"RbnѦ6ԵC<7dJFB1Z Ig0J r͵fB+ԼdŒ!Y׆[</@Xy7!BMyO1~? @Qze>-a&dl" :ӚW,m9S*ԤTXϕhϡ;* Rt 5!8EBOʀk=YFI5K]OqTiNUv1/\mw#K{s[ү"!,9tU̞ O^"7"7"g8Ѵ׮{vO>alݛMuRJt{AO`]ĭ~ncK(!") "nDqP"&K&H˼YՕuDɉPC1q<7E,r,Nܯ9mDTe_=E.{m`j0._h?raD),!wW QLj3ܬt:g? vvmPK4*N8 h+ccal/VCF_ANN_FIELDS.pyeA @ E=EJ+(jA(T܆q (x{tlYyWA4Pͷ*e}*6}VD2u {4z}zwSKpB^Bnލ[|۱)9dX8/Nx; j;|~/$:{PK4*Nk~GWccal/VCF_COLUMNS.py svw VUPrUQP Q. 2 D9PGVu QPK9NN2.#+ccal/VariantHDF5.pyZR)8䂬+Yf\0K2Kg`Ry}tKeILU[ݭV|ݲK벤)/yŪ[e4'gEwr\4`#L*aߑCܔtv<Ӗ?}{X[dYKvDY I>:->PI^4YtZDɊi R`qZ^;'Q'lypz,{VqG|Ky)͓R}f KHUHFȪ)ipg21dm)H` \"I:a&#|j^ahgg'- cޥ|^ނhXb$`C,\4߅<>&%GN3 3N,;a#|Gry.ȒDA=I$I$0Է')aӺ6ӳ]}0FA3 d2v2ZvFT+Ҳf4XL<]n=A)Z +KnnXAUs9)۟'^>o^EA#ӳ }Vz:߾^OW&}( Ij$XD-ga ,2^m7\|ܲ684A a'mE1 t"e=qڃ%%4AO0a3U$6Ѯ$M9 8:א@hͰjlDHf$]C nd&\{igiE0>93G tiM MS$!Y"ȒLxEEh2q2ºu< P5+iY5u:(üBGlY&I䩒~Y-VPMF=Ѫ ! 6eqjz1&,:&a:$Maa+C.rH6$Z&?76AZF-7'nؿMŔ]ۥŮE/L"^oO\S\%050cVFjT2JCi^((*Vma#(LxnhY}?|?EE.NEvQIU`)IJE _/?ZZBF<&eE {Г ­O\E+0(ΎV#aGM$ MɚQo?xY5-jlIV$"Em6!qxN&@r] rl;1jՅѡ:HL -2`Ag<P_bĈ1N.|/CkCoʱG﷡;݂|yٻ󋃋-(/"W5+,TdE)+3s)bUIU)i.ai-V K|K2D̃%<'f#3*iU%{u~\[D&{[.>cKtew"Axh茪r\;lG2RefE`3 #w$'ںRz7AmWaOlEw1Wjn^ҲC5|0VoVG J~Ew C]vb9u cu wmƒmW6} S :bQi clo RILMQi|ڰch;6ߌ>78A6d^zXkd bs|62|&QC۷VL0 wj,lQO(' _v:X{@rtt&\:%j:$h:tМTSHut3dew IHy?ֈpe<^m(Sbab:f:r7<=3 CDՇ6h>B'gӒPђQhqqR,M=5Vu~d5YdFRn201ğT)*׃S4=v/gZ_xf|KodIwozBzk+|T]%x Fq%UPKl;GNb| <ccal/__init__.py[Ks6W|R]a[=bRJR^P "  5o3J|RB};m/pN ~zx;|ǿ;%..6/L*.woZȖ;o=!5o!>|8>nn?>^="}$?on6wO3__ߑ{rs_\zŒ*nM)OJ\=ln/S$_><]o7IH1Gxnpyڐ˛_ɏϞ2rkFQϗ`$r~|B{O^:Ѳ2ONvxs Ӂ|ru} SY+|-8_\S'"(tO_yv.$r Bцtb"a- X*s#rgRS5|%o@&O7qReJ!.#Xa6nO)Eۏ#eYzCϛߝ}oR u xPWsziqg'*%/y)kR=QlO`@:4{ :+=-JVjC 'vlKXS}P"a Q)>WFVdacvj] 6'WJI*-} MxHe_ͥ& V׌_]ACYH B)St`[!y ޫk=ЊRuhu45@P6h7B7SNT#&LJ!g &=eCrjF \7UyRdl6}4e}# mrωz+ӧ'Lw)KT-rt;R洑*-*= B^k^5EbY!slOsښ$f6^r@T2Kw%-䦣lR&ƺ/JQ 0·{щVE%)N|O2 jOv{^ țh2KrOR2Arʜb23Mzc6&clVWr+h7H&8,7^r[9Lf73O2cjxl ZBr0Ӝhf.j@˜pmo҉BE^eza U -w,(thk!H=S`h 5R`0v'HY`b=-+HO'(KD?ìH1w9H XXHSi HpRľkD9SwSUL$U $7v71=& tfa:}^?ar'Yh<~"@XfT^4ByɎ5ơaAɯ~p hPj0HA2pc`oE6BS>AyՒAkd30#7 vbms%&f;{$`)F6UcȈ47XZUf7zbq\3=s#&LXPvWFB&Mt/LW[I3yΑe>>vtT;WQ'"{>sOvN2؄ Du&:*1erYC$fXǮ4XA <~vgan2E Ǯ4Xa/U420`uN2%뎭% Sg3;)TRlkO0Qq1FZ#4_P'd#KIA<dmH(62%/; d9\c)idc 3R812UcΒ}NhX𴏐|@-\q+bG {`:yщ:ٻ {l^yU(6* ˮGg jLLhX|b6]/TsF.ћ ºDD=;Q|&h bdA(!x+M*6 v/FdT γ@}P~,'sZalF8Аf,spL&O5#?Xn.Szn]qR 7k a <bś)Av9L40`ʎab/] ωZ5"  y1{& 4xTۛwtYݨc-jeN ^ ?Ukfin2ωZW$1ƲfV!S\07ӷ W%2W|0]SR؄;A_>Y-^ f}l4cT::wB)H͠kM DKa@L*`hZh3߭9 l-J.o^4T"a 'q1m⪣a#96}d+`'Y):92CjGvZj17tfա-Dȹ,g7g)q(k"6kIb$j7PMVh2${rv4O oA`,f9aXDh ԥE`d)҈w,᥈lFeά*?aYNz0a~Q X[&Q@잡#_GJc8oN?K Dꡦh6 )2™'N T3S̈́"/"۝s jL6 ˆA謉%P0ɵZ}"+gdTG"J#% d#9m YhPK9NN.Vg*ccal/_anneal_node_and_element_positions.pyXM6+HL0zmzj{ioidY`f,v1`CU)d]!W eصIPїeQ11cg jYQ`USqX>ᶡ(+i/-Q{'x,Y2)VNVyjYO"VK `;cĔg`7m\KgL86kKh2E ʚm2 [}cb/9J4ǰBj[2{ǭeL?O6#}{4ݥjEs(\r*fusÖ⓹`10?!)iNe϶]8틺-d@YL6D=vB\K颋]U܍1V7^<vM_\A6g:\K$/WH5]bc@pw31~n. C;Bm 3Lj}s<_taUCkp0+`=_z`!|^퍻0[}'= us}\ Y ebw:8F[+V"'m2 ?wtƒ@|#Īm쭋8sm{bBКaB͵fϟ (<sgrYo5#ulpo׫&>ؿ q/ZIK;X{rӸ!/[1:6IޥPK4*NT,uccal/_check_fastq_gzs.pym1o0w*dԁ-2\8U6K$2;w)g;H@wuH1bWg|OW^Q OSw}Ml[Viɔ%}Qd Zc)˄J  Z2 0667w]ԞK# 7gRر&+thhzU1X[6<$& L$UPK4*NW=ccal/_check_node_x_element.pyRn0+V9=^/ªh$IF=DoΌrߏ`}9jƞUI=1''uE[GF5UJjAhH_49RoJtl !6H%[FaBna? pS=ХPzgL$/tx"XUsbOVB-ғqpE_h u_\R nYw)K~PK4*NB?^yccal/_check_w_or_h.py-A 0 }Œ~k5-:e> WeH'G3҃*M VBz[ fjWv,lP4PK4*N{5ccal/_cluster_clustering_x_element_and_compute_ccc.py}j }a"н-IJ1c"v߾춘Ε093GURG+9& 1 h]H bb2`&$꩏^$-1 +,* tLہvHNBH xqB6qaElK)KH# 7FAG%njs馥xiOMbNm9XxYޮfUn"^v#}K+;ʏ߫Ҥ_,PK9NN'@D ccal/_compute_context_indices.pyݎ y .uv'1 .)Aش?hMzqz;;MvcXL롓BYT+c꽐\5eW"A i4=!E51 RnfЍ`0D5IpF p0csVDƐP*zCq&7sYųH*"O*[lDO ȟȡ\ы/޺2%S_y(/-q\yU-GgւZ3\\ MbC;cߺ/nI^;~vB|çi!luFPK4*NAnzOUccal/_compute_norm.pyK+U+-KIW-/*Q/JIMSO-(-IijZqq)AQjIiQDPG!(V)(_I PKh2N,Qccal/_count.pyWK6WEjuQH)zq](LɮRD=Vv7șoyR}QjGOu),v/T٣=W)oJ8PIIܜ"#tP|v͵,T\{xy;pWr> P:Ne;2Qo3rEVƅBCLfTZ<-=s"C[ߧCрpDY懝\.*]@6 VL&vܚPs6^ ASj+iݑ"ETV۷o]uѯb̋d zTjS#,0b J=t^2mSvQ(\GF1ɴTq)6wSx$!4#D{& l8 \3"\(S; ;5Ӝ|Pa-Yg@& C:M5/u eb쪅 ꀅV hNv#À/QF*&DM/STG(wl=YcFDtE ͼ[ֻܸzJq|G=Fw=u kVq.YN8_hNݿDik9wqyVmƃ8_ }K]"7U PK4*Nɵbccal/_describe_vcf_df.pyՒo0o=Đ8fA3nfH4VD4}}Dwmjϩ+pU-SgʂӅC`͂8V"y!}4qoY]UPb_9 5LγeDFML@O{\ x =C?hB)Lv_pP{#E+x5H&/&Rv7rhNp>^Ts_Б<:PK4*N(}FLccal/_fit_skew_t_pdfs.pyQ=k0+CAI.o!S1!S+j} MB$'q<"q'3hw5a̘E/4m<|G:yu !Jnd@[=MM] /cICz21Z*buOZLz2)"bUɆ@l. Os @+z, 4MS5IYHdGy BNG "pJklPN O,- !^̥{-4B8-L*jT!*"ę$.?]2flp̙*I,ޣݵԙfepNXo#_-<μ!n]#|cDv uĎnǰ/PK4*N}k ccal/_get_target_grid_indices.pymPAN0 ֞\x Bպ]֍mOJKD3:O W)Κc׀,C'#KؒuP1!Ё㖒.*E̳gc`R^T /q$T`k$˒]Au{W? ,{qܝ˂z}Pwk#㾈K_, 6Kh`٦ⵙU"cә4PKA?N.ccal/_make_annotations.py}PJ0+BVa|-8;A܌CNQVFi{7!sKoq.}( 8!IO)9_@4}z)rBe%j&@dTL^SX{ɖ$'8C{GZSebpsMOo/ EF(W{ݳẞ^v'yDoƀ`Kpgmҫ6.:7c٥ogKUshˡ:G6f(5f=OdQ7eCPK4*Naccal/_make_clean_vcf_df.pyuSAN0VNZrXPTDKTY^W:rN)%'Ǟ UXr,[VAI/Wty{̷&؊H$b@y K*drdF1T(ntE}PaC!O1ݝ0 RA)<&|~į8 ` 10lQJ۟)[rf[UH`JHj//66DMI+' p=֙Ujywd>'b\krL[]΁Y9G4<ۃMZS Ӗ|A2#tͧZ^NjPڒ\#\x2XsW噲P5Iz2V׀oAuav}~BvqlWYϑdPտ$>w]o&pwT𕜚/PK BN0v Jccal/_make_context_matrix.pyUA WX&%Z]'NӻXUӡG ת-I;m\ l75t DkRVxT1jg+u[Cjf82HG?28x5?#= ˡZEFxfx0D{C3 qTHb ZEnNDI[q4>9tRH$-HVAho(Mfd`v2Z*~ PΫ}ŋ l{B1M~f : u=Vz490Q(p렫 pXZm&˒$0>{P||[sr3B ,32„Vo HCh⮢%ܞșWk|LHG?F\R׫JκXLY1[ޯ.ݒ U}~=FC[PK4*N'y610ccal/_make_grid_values_and_categorical_labels.pyTMs W09Iu͔_0Z9ĀT@N{$$r%n%R>]-jz!0RLa[}Qݹ]oym_̐SX.\A+ewEQCdWkD:zzvK * ) ,њKӺ> t҆m1\\j@$Ǽ3/1ߘ$ڏKy8?ǔ&.=IF؏_Lm1_(W5܎K i.P&EVcVyo{#YIaqvY'.A_#Dr_=rIv |8P(HF(k^}2 m8di*tqH<Ëjmu7C5F M&h˅8 'Bo;N-߰e l`l`5xj^ZeOFA _022ޕ5 M|X2 ms]~I޾Nd khbX.vH%%{hV)=Nӊ?PK4*Nگ%ccal/_make_variant_dict_consistent.pym1 0wő@(NݜH9 ]ҨoJx}IC;'>,rЍ{gTX_悌:º?4#!0,E("|7(acc+6㇖B<4}^G7tӚ.QGPm܄#GPK9NN Y ccal/_match.pyVK0WD95RD ĥZY&qF~8 Q'[Ҏ73hK1q\R6%?Q1je'E W esRxn86i+%9j0W`D ۨd$$W!@r@DkOwEizi s#TA}U[0+, \QM;̐B0脇>hhP'fҲ# = b#a3h$ZT2|YEO;l5X C~KaRD&?'mjQNDc:Y9j 'u)Xb$++*Oo =vR$"\ vdcl/ϯ _.RhN֌GqYALi*1Pe +93iqAMD4 Bؓh]SFtf|ip6^G Mdؼ,^ꜹY障yV.״״TXb\T4Ȥ3.~9Nګw&UK:BRL1]+pB xP/pǤ p,g3gd9.*RYqc_;r^ٞw^{.54?@FЕV7%-ëyxSo;@hqs1XzbxmMCVΰ=7 j:*5ͱ3$xhTV|'ϒo+B64 PK4*NUccal/_normalize_nd_array.pyUn0+V@ \rTꥪLb6U^0`Ό)`V@Y-pQٽSZX+[!1?Xc4T$9s^XJ楐.l-B %\H+IpFIc>X!0doxI0d.@7:Κ'Q'\ުEK;GyqʉeDεf YAъ,W#t0rAՃ ]oȟ4RA*E~Ok,F07H:e5ϖ sFd a5x?®ӋG5lҟ!x_hxUC2 HjjNTDsk8`qu<"?b;踡r7խjvjݎ޼Vn$tص]lQ$GPK4*N'e1ccal/_permute_target_and_match_target_and_data.pySn VODΕvڴصJLF`k5G4i`F@A M5Ƭmɐ:>9ᰆ RHR6pMǝsR`pb!ڎBZ ;,ÛxJ Xr<{) QftL+ur%Ru4Ŗ-jռikZM=8cvt:;O`D4xo:B0v,pFrU%ֹ#ZtJx2^R:OM0xx>ַg<6:kFsā Ndn= M AHt1/Pu.Z`6:kPǐh+^uYlj=^W4z}JKXta?PK4*NZ[7ccal/_plot_2d.pyRn ( ۩u@U!7! * ׏,MJa=\9Mg% kEuYM*w m)=LЅRJty\ӠQ^᪽/bAz}SӶ ђ Z"P#>jb5"9cB..8"$G$4.5v.f/OP9!q7PK9NN=)ccal/_plot_gps_map.pyZ_6Щ/RmKLJ޶H@ h,"[fH&)Rn;X,l3?7MTE% U#՗fq{jD7/m>힕wع:]VَO*h4ZWbqQr5]i| %_vaZXM˜Z9=`mdi=TXegP˾.xyVLHɳ}j|'iVݷOw߾D:,_`t {ezִ`p\.{ZC|n5N&mL5nkITV9lcV=3K!ZB0s5u]mx}Ł ;$\t;-Jj,v^enWz;3$p4XDe"v\:/-GTpfY]'A-oڌ?v"UBv'}jXqSh|}lF^on8pqZ4Թ>f%2֝rs*),v0 4go=lpP{\fY_j[YYGbV.s]W-H6ա&]k!aIHD%ڦ/*S67 fn(Rkfb6RY6a#qw|y;}(Ɏ6%r֠HH#vnpĦf~3{}Qp] yCX[cZG:~aV7ĎY,^ .#VUfd45CLh͖q179U]骃kT$/oo_T!~㉜ VЌe/~Fx%q {"[ (5`shra[2d)}HgT%M%GDGӺOIYb-8A'{hx >$ E1$/xBdPIJy@Gf%gTAaH*DN$s Exu!^8RPkߗclAw=W; `HMKBW#A0B]IVR~lcּQ Vi$w|dB/P_I UD}VNf_3Z3z 1Fj\_N!^8T@^ڬ0 CTꄦDjc'-~p>ǀD˅D  i  kyHzsN1ey"81B0rî՚E`4gbD@ 9gL""!y {%Hzwy DUO<s Z:aNJ+t=~H^)ЍiGy#\ޔCE#w{a'[Ac3 uYz3c!;̱oDOD^j=Cę4 '1Z8TYPXe(= I8u RWDyLB9*|z"!"υ|FU6URՌK!@q&LQ]2 %={l2lVoZiS5% 'Dh6 "'L!eu3d)09nI"KJ(MD)xF[D a.S YINJh׾]⒂C&~gۣǟo=|RŽw+j\Pm+*RFR鏢mxՠ W7Ty2 d K,Dz%M ơyaLĝJ8q oWxHG;`;J{)'iQa*Xͬ(DQM*@h$RxI> 9';5 z( JMF S1 t|W+Dܡihxh*ڍ^W+yKasit+)+u_(jd/nfH0G9;ATV7- ,~%ctmzO}aLۻہ3Fgau ?[!p6:ov5t@ 1 5 l ~T3:{r z/A[Y3/t\ӿoʎ3kAu q^_.Rg3-I(z2 ѻXi¦n7w6<Qt7\xX\xp{]!؁Vo:̑zll}@7e|2[^?4 uev7o`7PK4*N o%Tccal/_print_and_run_command.pyK+U+*͋OMKQ-/*Q@JIMS/(+ #Ij@iM+.. +ЄpRKJ(ׁ( ۆjrPK4*N<}$,ccal/_process_target_or_data_for_plotting.pyU +ODJ>njHەz*4qpg xZ.A7̛xR "ַ ѶB!cn~)QϞ$@U GPp/%9J%2f=aގ|toכ~p-<\ YBCFzpȌ`Va^j$I*R# ^)q s+]-kR>#u$Az(PZr#{ԡA%eR+It6Ph 4Ę_MOdpkJ74G$ƃ=T=4Dwey,AH?L*r f/f}&M|՗a[&C;~Ǡׯ]lex5\4]^(GPs~[Etik6M*z])~yܔ7CV*(U+Sy RypQQQ&rs`Á.2Ұ*19_f/;+ǿTqV20\}:*Jt Yĭ MS[JSWw&PK4*N]cN[*ccal/_update_H_by_multiplicative_update.pyKIMS/-HI,IO-),LN,,KJi((xhZqq)AQjIiQF^B>\PK4*N{zO[*ccal/_update_W_by_multiplicative_update.pyKIMS/-HI,IO-),LN,,KJi((xhZqq)AQjIiQBF^F8 sPK4*NV~zccal/add_conda_to_path.pyK+U/V-/*QH+,JIMSHLIOKI/ɏ/H,ЀR2RK*V\\ @`T]kU]_XV@q}$ql((%e)i 6D PK4*N= /}%ccal/align_fastq_gzs_using_bwa_mem.pyT[o0~ϯ8S#5٥R-I]!,q:oN[8v^f&$|;/h=bɅ *3/kb/9Vg=Qk1M.n6eX'U:KABH yQ.ݦ.BYr.ڬgLx.+t|L.;4'; aDp$y* 554`@Wy)tv}RR@5F)lzD 稙w|vlxf?x ]pٺWDUd8¹g9`6fҭ4OUݱ laR  : AϏfkʜ'f>yJ*m+6zfZM^.¹z1oTi߄/YŎx5.Mrc5RJF/]ەv A7@:ì|l .8Y!$ݶT`M6T*iufmDW(C  ::TmxGzU \CA굙NPV!A{Ap3P]=Toj7f~^̹a@W?.{ߛ ̙PK4*Nl쬬T$ccal/align_fastq_gzs_using_hisat2.pyTko0_qO JҤ"5ISnCBdzKv<۴<\_'gec\(`8#PДXVR{2,<:/4(Z%X;%ی]{ ,F`(YwIFo % `۬=e}l|>'<~NstrzVajzA8Es#I ""2 +軖e$DlTb5[*Exc-rRѠ Jc6)gM,'APEF'8Ycw [WYZlչpl~-հShP 3`o6B4bϤv*wjjMJ'>Rd(: 1-ӎŢSRF0jm<'KXcPDt@wFޖUs(Ϫ=mڗN R+m_[XΑtz~sʹb>Sدno CGEʶ3kUnjY}_:B<`5XARKX V7H)S <>߉XV05dKn8eIUZXAT!PK4*N\{ 9/ccal/annotate_vcf_gz_using_bcftools_annotate.pyTM0+,N ^+S7^?2`Yai(6_a iU =3oyLF1c^;$Vjd6(jBP{M\蚣Ӽ2J Nв@?Hp1J<dpDQTˆ T5pgA2|v'c Pt6XxkvqSR-pL甶xY:"P*sto]sq#LSƅq4hfos{48مN _o_ܛ1% $Iɶ4{lO.4ږestR՝6pPj$XɎrKSx"Ev8%e Rb|~>8A-M1:ٓl9vM٪nW}CESl5R~?|6c6)掊VWNMC!sEљ `ZJN[+uMnI~M`6JVYUyy+E{<Jݴn3 Kgo3X>4ci0 i_ ү'=E=: C b.Y aMNl$]i}9tD5(/y?]F&-g:ݤuh!pk1I խyqKB6`RM@O46SCsB0Ferz5Ր|C«־צUUV^=YUBR.\ kQo ɦ5ZviPK4*N+q:8%ccal/apply_function_on_2_1d_arrays.pyU0VBrc=U{YFn`SJk!6(E9Ğ OCdG~2%8i»^CteoLfD0rDm>E#g4-zx750+\* \#k5TJHƆo-ǁKwsi,g(E9]I+Rt hQk,H = lz"ӫEy(n0N.X@a퓔}1q1-"GOÁHSCAA6q^|f<_5Mlr mKEUBɇ9nhJ^ZvVȟr; tv` XYnqѲXT ܡVG9?Sp0Jeį&Y,XfAȠo:(}ɴe{5eAڿp VE o A(mv7t0/4( 6T"p1J:a!]SnhY9%ߛqshD7n:b+7w"B!{Fp~~>ۥnOJT5 Vv+PK4*NKFccal/bgzip_and_tabix.py} >ŐSI`hR5nIWM.3?3*to'AfrHWɘZ'Ԗ3&ܼ~\4ˣS $&ٝff"xHHi  %tkO0[[606M Ua\&Xi4tA)z-+/<{P#7FCI3\{PK4*N83ccal/cast_series_to_builtins.pyQAn! AZ Uߗ!RT03t㹀Dz!e9/$e@օIsx0_ac0^iŕQ{F2K¢>-ֳWC|eNS6^ھzsZKa86 m#^Q([Z}Ԛ ,3.$Co+f]OD)>kD?PK4*Nr:ccal/cast_str_to_builtins.pym 0 D|Ȕ@;Me0H24*vOwzղ2̳ >~>|e"WJ+TzqŽw^Ke4#L> \HV%5ً+f /D2WrhPK4*NUfr)ccal/check_bam_using_samtools_flagstat.pymPъ0|W,}jA *7Bl&[v~I{v)Iavf2c ף =X7"l젅0 H|'eewBt@[g$Y84:qPLX2^~^4] qރ {Emܫp5 S)lx!eY!BˁDHk^J劥ГVힾx0fh/ͽ%*15J嫍(~v)]PK4*N"A$ccal/check_fastq_gzs_using_fastqc.pymQMo0 WX=5tun a'+ kH6 הύZ9$v{je*!2ԒcR'aE}U5=L>PK6NMe?!ccal/clean_and_write_df_to_tsv.pyMj0 >U!m!7)-No_9 i^YlAs Kb< Ż=w𼫔2d  |fWs5B-I;6t@X Pe7|bo Xo_Ȯ%qEΈ]8Ȩ8c78}4F,]$YؼwWcsKث V/Le\}PK4*Nd{Occal/clean_git_url.pyKIMSHIM̋O,/-рҚV\\ @KK).,PWIT^Ɗ5ţ](D E%Ey0 .PK4*N@-<-hccal/clean_name.pyKIMSHIM̋KMV\\ @NMK(*()A3KR2@P- ,N+DRa-BBYjNq*]JP7sPK4*NY@UMfccal/clean_path.pyK+U/+H,P-/*QHL*quR+ RJSRRsRA BӊKRKJ`4 4PK4*NBk+ccal/clip_nd_array_by_standard_deviation.pyAn E%no]UGgOH) Vg77cMi^fGe[8솓%* DJHAey}Sacv\ HIu(V\?hZN`;-5of^~9x,^] gcAΟ`ַ$5\E*`?sG*' GOٳX 0>|P/Vb "ycMʶ4O9]tXv`PK9NN0_wCccal/cluster_2d_array_slices.pyU0 )AǕ8Ӫ4@P't;M 0aJSc/@4"Q!\I H[I4 ` @j5ِ^WB$TR!VS&k0N(L50Ik ܆y>XDvXVd&oF88- NRBR5 tOl$543Kp ڷzy~ |QߔűLdB0˔Cl!]vh(!'LhXi):]+ޭC4sK,ɃuMwD 0Ki;Cڠ,39L(/ďg<~h~eDFֱOK+Hgtz^Ȁ^Xz| ;6BT:ײַ+˜4ס:g\nI +ƁY/(3ۓ*kwauzmDؽދFf/OuKd]r{uR*9V;C,vKyj傍e㡊>g|TPK4*N#(ccal/compute_bandwidths.pye 0 {x0|4 IIyfneζך9B1/> B\\X>הg/1F8I Q%"mMڽ8]o]߄Դ7cv: 9i;ԟإ?PKMFN ˠ+L@ ccal/compute_context.pyVK0WX=%"DZqA+倐8r[)V;W;N]molg@ Ir:*\$Hi (ar@V~K:A*d[Le%kOZD*AN" _@r:/+&2;37JG2mIP`S ^BOȒzZw69%wsN$0Tg:zzmw }]n)>I"rSq=\ő(>6^FЬzX`p%̶-]Na23Q-Wn)Whq'u0VM Sf~ =˒afC* }P{jlnlߞr7(nVtfk%\Z${iqw [۰݊- a ȓw(5G>8cp8tJ-&ⰱ\@VoSql{;u6 H(]_PK4*N6H$ccal/compute_correlation_distance.pymO 0W책Xԓ~KyI{SC`8/f{naCmY I'p}'!4ìcn<3y3ؐƃ2Twhy*ۺVV`J ;Lwە nϢ9/PK.?NR !ccal/compute_empirical_p_value.pyN 0ŨFP 5ZH.4])|Ckx%E|o6:E@t,) kZs+ڒO I&R331R6, MWP.;Bes/5i"["˂^{;^$)[pfpK0Y7b90{d9E'!mb~$z-l%ExQ;^3-hd+;f˿s\i J󨤝#ɮoXk6pC/9ۻHVEM߾m z_ps\Tv_+mjw߻YKl@ &"tI^. oG=vܽ}{+p#>So~[; fPPK4*Nn"'ccal/compute_information_coefficient.pyT +F dwcTɇ~@Ojg58&qUl” %!fAۼyWa.D5n^R6d[bhPK4*Nol$ccal/compute_information_distance.pyA @ E9_v*-2d1I)+_Ӎcs0tTNJ`PK4*Nx1!ccal/compute_joint_probability.pySn0&\( t*PdfmKDR Įd4)Kp޽{Du=6/ p_(hxʢ ;kqh W,&;-ۮgyѨoފ-6=HބAm'w,V+,WHp5P;=`-\ٓ F2t/~d>+V z%ɕa:`Or)&Nؽu i[<2vp/T_'\쥎fY+#_"찉Ö~ky0`}:oE=G AEP@E4y/ Ij8 E99t Oz:t.LӭW8%LP j5BLmF!6:⧛PKBNG9V_v+ccal/compute_kullback_leibler_divergence.py-K 0 9E*uemS)B+x{o30 KZ,'XT#6*1)&.$%K]q^j:se8\PK4*N Vjgd/ccal/compute_mutational_signature_enrichment.pyWMo0+,¶$=FJC !̮U06IV5`,x?"%\Vx{lʊ%#TͲB4A~ ʱ7)"k!.sH &zY#b;[E^VGy% EYɊ"Q1aHemt(%J$iS0@UEi] \vپą*J #A8eUPZ~u"zdۆR?0}3S$P1 &ȽRu '1=̕'$I:y²%lYv_yʢ964v ;^K4NQ 8MW8Ak) s Taey}hQ;&2L#BC5ƭ9#1 S4kSۋnRę1*@(1CVe,jsy9 X~ va2j&ٸ$"?(-cvJ rR 6Ik]lw Xu>_KK瀩Ѳ ӻwXgZ3ƏFLFukdZGN6HP- uZIރn\dUNK%*!ϊx)GX/z|4 CWD;k_n;R`Rz)G C=nh4oUo#JI+J0SM]S]Tf|2?%H#3/l%ccal/compute_posterior_probability.pyej0 ~ ѓ YB^[)FYNiKtq:>}Rk78*kN/2m|Mh锍[`ݣfIiE_V> lKF*E*?}/ 0E#gx+0AZ5duwxsg4!SW-Gq-!.qzMYR~SOvW]rh5&f,`2ϔ!N 9(qSvkT2# x4'A3AƖЕP:']VƊU:ʨDӄ8_=>^u{&D^ޛPK4*N%1ccal/concatenate_vcf_gzs_using_bcftools_concat.pyTn0+,VA"w{]TeMJ AH- 9g1 G94-%88f\ iKA &'v4R stVy@+F&*+ ^2:;9(#dxxFG.I7xlyŒ]5P@;k'?bFl(B_^O ҿl٤S=;U\Ok 5u#ҙі yunucZ7`i$iB/{!BzHy޼L>VkMֲuaI˵ _"Vx“Joz!x뷾\h[]߀'zͺQ!:rpa**/}HYfM7eEoj^?PK4*N?~ccal/conda_is_installed.pym1 EwNayR "TK#C*K?[¦R@z.hnb]jں9{ $])=hgcy= $Z|kY`0`q ` PK4*Nccal/copy_path.pyQIn0 DN`K@-jɥ:9Pw gqryM,LBhX'7 -/b]R8 UJd|oRSZn "Lw5xlabE[RToi/?g˻YѬvȓPX!+5"{YsRnZ|sxsXp'(vs- q

ӯmbȼzC./n>}|a6]@1ɶ$axI2,AmDN5 g(k/A:M6VClZr.׫rBzu#{ˆGD?PyfCgS$GfHGC}Hyq5ʃsʀ8`<"Gu+@he4T*K!e 8S0.hg6"-CC˚%o14Bhd |y$sb!oٝ 6&p$sӱ,h-/?St ԶKm,Y!/6|X7TX+$Z2$gFB&'{UlNx 7 d%$ kbqXLwjBMk4b@n$qUG”3i+XKIY*>;؍`x+Q~K_4NySd駢pcR8YSd˘z|\+ fK8}PK4*N;) <-ccal/count_gene_impacts_from_variant_dicts.pyKIMSH/+OOK-HL.)O+ύ/K,Lʤd4Px: `yV\\ @6XVZCJ@GA51GHxy-SCC-["wR-•Hz0jDN)6VAV((UPK4*NWn,.ccal/count_transcripts_using_kallisto_quant.pyTn |+Px>VcU6lw{IQ`efRcN3TJ5j2^e+aߵ^;P%^´CQRʊwжաU/iE_{1! z@,iK@gcк];GQUH]1%ӥ*9IP(GX/2kHg[l-t).iN7dV`?3縪xٓY|cQ=c1elpPȷM#Z/le6NšwbB) )̒+]>Q3' >:5f DTmQcPK4*N: ccal/count_vcf_gz_rows.pyU[k0~8 ,a/Y66X[إ/m0">n4dɓ-O;qbw:A >;GG5f ʀlP^V(MvP,>DQXZ몸](X4lR`y # _J)TRL*#| Ls:p?'v+y6[][^̙g[L17 ה&`YYHJ:6;86s (8h(3td%e=>ƚxLv$&\QG8㗫QFwe2{JF6mQmFC܈8FC}$8m-`cwg2UOŤr- 4DcǷ&&a>{= ! (%k) I9YjTuc<88aM|f?Iʓ|\J^0X>3 C= u ; h~4t۸5%Bv D-QQë{ĭe־ Uv+G\[6@w6bq<#ә_;y,╭iPhZ%:}PK4*Nywccal/create_gitkeep.pye 0DeO H =!!$ ݰ.{vo1 $nUD*ZԻtJi0.wLQ57Aq3 BOޤj˰?H3PK4*NʜI^ccal/cross_validate.py}Mn! A"eMbLed*}Lhzٖ ~[gs#x텭tvOkXЩMϏ!Ă ԷvC!5:TeQS*TԜ LK͛"ȃPʘnʫaȬ ,+2$H XFmV(95m̵ْ &fJy,GN4y~ЎK;5B]@zcc,'~PK4*N(ccal/download.py]n <ʉHݮ]SXpZ$8(>247>۶X!q[ Bt~J"Z+: 9*nc:nջ&;n,BKTtnJWx~u7sLY bSF=Wgi?N6sKfjQn[i#\lYbYT-&Py}=8RgT<7֚_mgguIEfPK4*Nk#ccal/download_and_parse_geo_data.pyWKo6W:I^ShM  zI67ɒt7h79EryjZGf8~cɆ G?1~1%[n%[, HP٠&`l6 oj ê]VbAцKWֱ垼;eZ.UU@V#l AW @dwnPւcޭ sAY8cM,ku#@^DN#kr]NKhNu+rftα)h, §U W6ޓ3 )|YE+ákϨ&k7 =ԙ;Sjm5r˔Ywx:D|/łm1]"6[5f*ʹ!(ۖFÊ$I-ʼn d=kO4ϐRHK4Lϣ"Xm 'nR᫢ 2՛cj4f[Ӵ]@J/jK D:2o\ •i(>/Mrrz72_O?/Y \&tQB).SO:q.hϼ׺\@j\D4}vv^nhq9Uɋf@BiE'K} 4TMK|;xB( j\g6`+Bzҟ@]KhAQvǥ+%=bL&qovj\zkе6Wg5PK4*Ntccal/echo_or_print.pymRAn  ɖJ| c0nߗ'Xff2B?S㩙"q @xG4:yF))iR@SWK0.v/#^2# ⭪2s6 X>TVh"[ɚi9enp:6.`#bB\tnvKGXQcثeϺm}:Gzl.wZ=LO+_Y564ߓugpYGy/hAOPK4*NYOiccal/establish_fai_index.py}1 0 EwBdJޢQkV( {_zqҀJeF YfSCé}.X$ϖID#S-cۚm 5{a?LÚ_\[Nq꒱7ǿ Ib6?PK4*Na)Rccal/establish_path.pyj0 ~ KV{!=kԱ쬔w4$?Int`,Ȯ7גXE/\{H3kŊbP*"@ħY8{$02jT1)I e Ik{^7wm͠jƁwͪEc.P] A:.]lI%ks71g*n#LҢq;i_\d}G8avdʴ^{?p*/ 5~#Y43Om|` zbeᚳ?PK9NND-Mccal/estimate_kernel_density.pyn EW]_@ČQC@^nXjcrţ3 |+#q6 'GCEqpRָoh/U5&JB_$qtxnqq$Gx@ZUR Wks!;ZOɢ?ƹZHaTuE)q,ٜ3yrCsI*91zPJ3khqezڭqG#3 % zR C$߽N,NX:k`4 a1;8\ fmvvNY9/KayIw.^YPK4*N± ccal/exit_.pyUK0 D>UP:EwoPF< 3"OhBzpQ7~z [ۘԗYw$LEyR\+9| SpRoJljǦ[ G\!;cOn1Op# PK4*N)eccal/faidx_fasta.pymA 0 z)E edohaGu-[&7z굱j7SEP惄GkWuaϒ\9n PK4*N,)ccal/filter_vcf_gz_using_bcftools_view.pyTn0b R@4M_ qC33o<33 (Sjn߉BKjaA4>d˚ Yޝgж7@Ig^g[de29$!H U-WU3 3K{Kb^n>ZZޔ@)gl519%PݏC Vvg!b+3ҟlBo 1Iϗtlf ?f뛠ftd-+Oe{Z8D AceH7ra:Qk^>N8^«=Hk\Ϳ,[Z(fOPBfGU}\#tSl1}U Ifv -WWikѵoWh%cAj`}rf^JyTWBagc2 §*9^RSG|PK4*Nͭccal/flatten_nested_iterable.pyuPK 0{YjKJ=HuCC HMTi6obVhAJbtјC$mї&`5 Q$ 7b_"rk_h4S6'Y;FEE4^ަ$,7F_~EP cUeCPK4*Nx,ccal/get_1d_array_unique_objects_in_order.py}0D{Đx5/)t֥=P vNF|.ua@/UD`&j>iBV@G:f)9JLyp{hb%(3$.O8}ϫ3v `L<2u/%f%R!Œ4I\>D- PK4*N p_wccal/get_allelic_frequencies.pyUA ⑕Bh$g#sE#TrfNߓeO6 n1F=[-z8?1+6쎥 =$HrDF׿azj`P (ѯySPK4*N9inccal/get_git_versions.py]Kn0 D:`Ȯ- 7 OV; g捧G a3`ȉ.0XƧ)Rjv|wJ<Õb$ۊ*70f#߼"?{щ;FdQu]͏)| b\ F6h76:m1WRPK4*N)#ccal/get_installed_pip_libraries.pyM D~I/藤AҺ]emZJ2 IR LsxR6@UQ8UƘ ^3ШLل;?C r21NeRSc󕳃;O]cuPsGn/[PK4*NT-ccal/get_intersections_between_2_1d_arrays.pyAn Eb3*.+ytE#bh'Nb*by>_Xq8 V8)nSWݿSޠfGq͕+ ! YSBq>#(}y|vFbu;b^ XHWG/B@^k5?U~y(Lt.i69z:4C%7:[bN4粒yҟ <)Oqw(!T~՟PK4*N(Qbccal/get_machine.py-K 0 D9EpՂg)ESL+1.DvV|^̸Acƅ,G L0Rĉs%{}1ƖTHI\}l~J֫D PK4*Nh'@H&ccal/get_maf_variant_classification.pyXMo0 W> RRn@5$; Mglɓv>ʲّŰÌȨ'"R+ Y^A4yQ`k8STҼA@Ziڮ3KYL5|i ^EH3= GZ7^:apV2O%*Є~* ?'Pq5"c1Ph!G G&X7n~0hc 6LCducQ!XW+?\j>MR8ys򭾱T"H!eB7'yo6pi )40N&<^XmgB6UKFsq=d5}ϩ8Wp]b*uF3ͨX`bixm4;b}k5?:bdYh~'G$`"o%'(z1;$2w d0!p#y/"=/ 3gʪ()g\dl9[x܇̻ 9w+eqӅ으>7-ڰyj ;(`ivYq*bSqWӛ.gGI Cĉ<75ɼ\c1ԥ/۵ \He–6W>^>[I;o?n CBb]O+î4oT51tʮ1[ ;oZxbT֎{iBi 4'HcF!Dw_w[xkȆ^`V! {7k~:#}Sd2DI\3W}e%pGdl)UpUIp\9sc0i0:BܾWoPK4*N[~ccal/get_object_reference.pymA0 ~ !X!u*WMl5[59+yeK1Vu _T7G'%Ќ Klk<>TnJ9Y }e j}}rͽ{ PK4*N7"Accal/get_open_port.pyK+U(ON-Q-/*Qpts Qw ruՁJIMSHO-/H͋iдR̒ : lh*$CZ@*`.J-)-ʃZ b%jhFrPK4*NJm~*ccal/get_population_allelic_frequencies.py͐A 0E9ŘU ]܈NJ M$Exw~.]{G93ZTalQ;ch(Vj \1I+0dYd)D,f"ܠ-$*xc|ɿ^%a9`߈=>Qfj>AvްW|GPK4*NMZ "ccal/get_sequence_from_fasta_gz.pyOj0|WWom ٜ[L6pTO[@23Frk+Q7pEOV.8zՑsڛM|<|19QJ!lHY@}->(Zmd(!#Z7w$V,!O:UeQ4߄~m{Mc!hrieRt 1`yyz#j9_CyÀ\&k)V/PK4*NH)Uccal/get_shell_environment.pyU 0 EOW/نȌM%ncWu2o=$-9T]55`}X`R pCbUH@ILV()?Jxg Ҷ]gy& Y1RISlbd~$mo&f+Nr YRϙlonN9u%}+X,FPK4*Nwopq,ccal/get_unique_iterable_objects_in_order.py}A @ Es,ۍyqr붥?@k?G*QDi 4=I_@N9}dbPK4*N7 i+ccal/get_variant_start_and_end_positions.pyA н˄E!EEStwD\JAǃؾ].-2[vKrG T&42y y^L&yaL݇sw1# ʅ[c)B?XvYzFeWN_5PK4*N"ccal/get_variant_type.pyKIMSHO-/K,L+/,H(JMQH)ѴR4<-$E! `P݈vڍ hA^J@?\]6؂]_0\3Mr*,J-)-CQPK4*NfA-ccal/get_variants_from_bam_using_freebayes.pyT0'U?PUchlDچ88[%f /ȴ''MuX1i0˄ODRY4+qtWR:R$ȏ+g=Z.fZ\Yu($AY} g#UȘ|V`,A51Z(Av]V܈\+ Ɓ,HR̳׬gؑ˗vp^ M#"R;gY=JWW.]yDW}OO0M"?2;_k TELaRpM8 DyPr;!sidX̥9273;്o  >,ߪC Wzƚ"MO /ܛhy;[2>jO,T܄y?{+~6["3Or']mlPK9NN >ccal/get_variants_from_bam_using_freebayes_and_multiprocess.pyQn0."]6e+khp}} 6p@>f5NWVцJC0xc(+ε"EwMp.r =WjaTdeHb~/U.Snh*~ !jR5q܉M+3g$l>>,Ňxj_b H2ŧj}2@߱霧X%'`FH^ymL;J|i⁕-v<6/ӿ\+p'Y׺b0PK4*N ؒa+ccal/get_variants_from_bam_using_strelka.pyTn0 + hlr[ajSV[HYV'9vlgI L'ߣ5̑h1Ӵ=3T2JBhVkYUe=Ʉ&_T#Wg,֦X3ȫy/#+(Ð{Ypzjxz\Zcyӹ,1_ñaq@@2X;,sF+4H43. <6 ]S ݴJf|v5_Ў&V] 6_~qLф4tʉ~s9'fUz)W[oѕ@$ۃ9Y|aww?,/-Ym`S E{;V/BѰInr~5~x-\/\m}ooqڕ?)rECy<uOzs%9@Is уxj?3{ސ;f=O%|DBGv DWj󑔿PK9NN\$6 ccal/get_variants_from_vcf_gz.pyn (YOVlb-^%#JjjQ:!-Ob.<$EϚJy7lڼP?~3EA8>*Y46Z g~oŚT9؂N skr}N3I$>vU 7z.(PK4*N6"rccal/get_vcf_info.py] 0ESA24r#;g{b!28[?$$б}k1ɑp/rHl)[PjR ߩ4@T?UoPK4*N~lغ`ccal/get_vcf_info_ann.pye }î&=`Q MvNK袇OݢIި?%kP畤d@Gc3F;oi[ )cGJly:HCTF#ZWg|n1Šu!eb=r :{g[ c4 J}q"PK4*NK PYccal/get_vcf_sample_format.pyKIMSHO-/KN/N-IO/M,рP: a@ZfjNAdh*Y)iFC5 e楤VhPK4*Nccal/get_volume_name.pyeA 0 zɆ|h\L-Nߘ$ =jFISxoUj_f v3}NFIJH-JEA:a_:Yޛ؈ wŰ%ZE r֢"]R|_PK9NN]:ccal/group_and_apply_function_on_each_group_in_iterable.pyAn EbXrJ>IR*{cX!]CI p]qI Չ˝ Vߕ07΄ixN)]Rأy0TJL-HnD d uz%=Lna><<4k:%iuS0qS\\ozD~Qybo`/YwU ܺCJTy2PK4*N`6hccal/group_iterable.pym }Ic{v4E^PK.?N# ccal/gsea.pyVM0+'.e)M/{io;ؾ7&Qhmy33OF[5HQl/2HwcrȲv⢚*E #T1M Cu3r4@Lr"wGXfhK{hk&OeТȐ=. \CHL1I֐pێ1lIj67{ T?ΞAσXHծ3_|0Ca -N7"h.ѽ~OG`Ϧi;|ֻ;s2[4I-& `>|ń)m6crihTu^f=9RXi|gqTYl+V.&cFg!~F qzj 'zMX|ȦMZtO+ǝ{|v[๚N=`/6oǸ@G&X_4ln93pElxDݼ,"n7==̪H+TĮ@Vٍ1 ++o UY߁0Fʘ"rףH.pLОod*q?Jx|*6?Q+cȮ G҄*0h_?PK4*NL"ccal/gzip_compress_file.py}PA  I4-FhӿKiɲ33ˍ[BjeVZGA 6PT}+Twj%a@M]_\}-2SgA@CyKf.Yq!qj}&$JoF~&eC!I$>By FV7MfPK4*N,<4:/ccal/gzip_decompress_and_bgzip_compress_file.py}M tetEbC(jvC- ߼GϝqX>ptp ӄ- =˞[B;61V+8uVȦjDAp21ÄzɗB1ml#5 ',;ovNEC&}dPK4*N΅ccal/gzip_decompress_file.pymQ0 wfO  $,S:anS#ƻK'2$ikZ孁fq a$}{ =О.{GXkl4YLK8ڼb xЦ!+5q} CL1aCnfq""?G3Ke!K#FcbX0^|q3&[T̀ߨKڱ !*v?Lr&*9,Qi&3Ie٬ \Rj6TlH%{ETNֲ MjR0jFʲ%.,Jݍ=3ұ jbHI5;%ʆ#r]Ck0IG%fEebBjl23{~c'lGQj lyŨ'‡Ŵ9x(݉9B7}TVNg9.KV^EJ!oBV;hS .+ y[T';tUuZFZX*'Uvd*ÜY MaQۼzv:'wϳA1,n$~aUCtxNmq֬!AP8NmC ,KI< _m2_/hOgK 1q' P!K0 ?5gQ.C!ſw y_=f^MI̺os઺.r,ll!l#uޔ&BU ƻ,3&v^3rӬ#|l:xs0Hض= )0>_{`F|ԻLcuD 8>N}NZ{RФ^q"5/CWBܘݏƿ`my5o1@e6Z:eĈUhAbVkO%bۗoxz0hɚoLbB/\b~|,>3T {mq>.B2 eCk %ӣoiOPK4*N@a .ccal/hierarchical_consensus_cluster_with_ks.pyVn0߯Xhe%}*U#U٥).`Sۤ﵍M*}3g(9kAh mǸD8jq >?J9鎉$I "$9}:m#K`kFoЊ`x^50gT`*z4n$g9ӵ\u HuU\ Rxt8 \>Mdkz26ߵ)Ϙ\vi#(^`ʞ0R`DqO{4?UY Ezqv~q~vaWBkˊidZ59%GS@W`IXD Їw 5(  N/^?>f!Amlc$' p A0{\ 9=*''g;eH_* cmKUh]A$Nd{RzW<4er:^S3bϝhUIpWqs=:A02KWK$o3z$+qCH qJ v_E瑦!ν]>-:~f}mI[omn᳆-Wzm|X5۹}Whee]QUȵ,d3DpБQ:sۧ\f:Q\ynVj|Jlp'1JWrŒ4jUZHg(˲00Xj1B٨|2ׄ{@D@t3Z"9un 9modWDFǙ1lu9eZu9u⥽Ll蓩Wl;C7n6";d\٧x^xsKc%}˝D_w8n;.n_(鳯cKPK4*Nf7Dccal/in_git_repository.pym10 Eb%`Eܡ{D$D*/)Z_/g3i vᅙX>HXy6.)@NNiuݎ"!D=`"\Vܩ,ӸL`+V/5;,EBlc ;A0&vpKGS@PK4*NHf&ccal/index_bam_using_samtools_index.pyuj0D'\CC/o-֬Vi +u!YtzYfb /V)WX ڄIs c x"O9 &]w7kt(v89ÛR,IhoMa@r7FmYo˰hQ⑙r>m&֊|.:d+Þ_PK4*N&}zccal/index_gff3_df_by_name.pyS=o0+H@ d3ݺ H:l,Gj!/) ww Pa0#hO!PŨ[V=Ev3Yzoe<_=EQ0.@*ƯDۍGa0H͈pv+G~PIJ"G1%+ N]eeeʆ Ԡ), :Fa 8|QZ*ȸxzfkJoY0lM l.\ U+xwծo4g-Lx/~ˆ-JF@K6L| aԃrsL>DGlD'UŒ:[L7Yy0ґ{ io͍7wn*>wN1V:WJ1\1_t_/u~4&c"uר7Yh;^-As U&F[+__ s |7^ZMm.PK4*N0a ccal/infer.pyVn0+B(:hKCoAHSI$Qyo6{D gZ)dEs4DZr*@ødgO0WYw/@ 6~15Q]wF|S9w)7X*%[00BP,:E K((˲{`(F &8 -oV]\4XQBŧM?!|V-Lq\Q9i(. .2ձdʲQ0r\rh(i"DJ r.S1|$`FuҒī[+Q6=e{a0[0?PPD1ďbXz`* F~ngKBr9tCJyB3&M%yĘQ d=ǔ۔j<ۥƢ U3N-}?.IąZ]WpڔPŅ94zu)[!*䐜a_e1 cWQ*?t5;_Ʈ0}[ sޛRQ@$f jI&}GmV;"'YLk+dz}AվBWMGC^ۨ+&)l RZ֙:9@`vllToO׷[c hp%s Hː6(1E,dqf:sq2=ݞ,K[ڤ'&8kQ5K8h1c%O ڞ6F#+8mr[{u6h#;>@5edJQx~VԨƼF8T3/\T᥎_Q5ASIL֏pa{]9tM[49RA8WđSR}R% [_O,l".w45*PecdŒ^1yAY\35_TϷ7JuvlMOv׻2}apF_  7MO6,/Ϣm3V  U3MD gv*IRaPK4*N/ Accal/initialize_logger.py}Mk  !^^ "uL?-4o&4ΨXI[ڞ}HTv@+4j|rإCz ! $(NZf3',T!@ sɍ!FɞԌrj98f!Z,/uqUUͽlDUd;1eb|ysƄD;RRnnհ-rʝ7i<#{$IHOPK4*NU *_"ccal/install_and_activate_conda.pyTn0+ Q$0s:;)r AK5xbPZQ͆o޼7Q%G9*RJQQb%Q6ڢET Xڶۛ1tYiـ`F9Mb5 !Zv1Gȝ 4+)P^9~JC4@s)5(Kjh3bWS?!Cfs}Mg.߰cث8N&v}@Md(K˯~@to~f  C?i۱ZKE0Q9y-56Ir{z^l@gZwr:8E!q_ok9fJKb]O:,iH/:I[}(X'j4xB ,W]mI •AX/]wldߧi õE`# /IsJuW /~9jd0׆: vdX] ?0W5LPK4*N  ccal/install_python_libraries.py}M 09@o}H I\xĶ[ {ߛQ-4OLB1؉0N4F6xJpbajP[+]+X 6CzyWu1ڳ3j *O[x g.*;O_B?~xƩjN+/H M꯫qAB Oi8{PK4*Ns@Fccal/is_inframe.pyKIMS,K+JM(JMQH)ѴRԒҢ< <M]LSAUX PK4*Nŀccal/is_valid_vcf_gz.pyeM sU\ݕ0HV'&J7{8GyOC}2W 0֡/tMp>Xt}+;j Ȍ.sԵ}l0jR,ȶ!XPlPK4*NX+kccal/load_gps_map.pymK 0 D9Ez/6k"I2<KUlAq274@r+iNF)*mV,oE8׺OPK4*N,xccal/log_and_return_response.pyMA E"K bT%I_E[M>G"pEϨ'S[R ;|:_!t_c({Xfc`_"И\O dn>3 !(6v76>~0PK4*N\x1ccal/log_nd_array.pyTn0 )"Nuq*nU` $(I\OZ]'תQyWU$_+UPn~J.OKHך,W]y6em{ !6BBLiy˸aR0략]"@E$ }00Htg#|°B&wp8[xZD&-@T 7%opL`eN<ߤDŽ-Ԣ<;0[JR]Q 70^$4O+_2<QbzVQ)r&Y=MfݵrEi:"*$  ZoFކ\\6,w=4,/Mp=2\| CdMvlSCi$PK4*N~}ccal/make_categorical_colors.pyU1 0 ]И,=@g1+'edIx?,q(,1&jhVzCڟ: Zh:""gwbSclmi:K&]ŒIǂa=~PK4*N4ccal/make_colorscale.pyT=o0Qvԭ``d. #T!߽{wg\jUR+t 阨[BQ9&p,“"I {#bbY4("TASd\qI( ,RIZ]5xp-`fwfkp@[|0 e7QPfBqIFEJanek4rDDER? =Z"kU AkdiO|F͞$|{3@`[Z3G@ƘqWyvfy>N:!Mx?k1}wcWlH:>PK4*N(D6j#ccal/make_colorscale_from_colors.pyM >EZVF{,,E2?kr %y#7"E^JYw3R8<" a-\ڡ6ɨu>c12EFB`n*Q?PK9NN`e"ccal/make_comparison_panel.pyTM0+'it -{_0V"C7՞6`0%R4wĥ#ꨵ^ 1T =J(zƈ;a=׊獼 $8a)JLkiF+19(`$m&3B{rꉤQ E1C2qR] AT E(і aK .N'2S qgZϽS+H*tρ. 0. Wb,0~ˠiKANoEL]#qDii]mUI$3WSÞYWFaUE~J"dzf1j= C5;nx#lrؕt%*D^b_0b4mfhЄ'3W;I>w%}qaG\~qD3yC>s<$2\Aשbt,Yv ,۔H?cmsz}m^wF±G2_PKBN@_xccal/make_context_matrix.pyn0 !h: f髒˦wrv#Gx@iYg`p4FMۖ>Jg+PK9NN=>&<ccal/make_maf_from_vcf.pyW[k:~^j-(IOz4/E+j[>6)IZ{{o.fƹ%IBwDkAJ"AI%W"$N 4,g)WuDUOh$¯ SfRTcU9]GC%BsRˮt}ڮzZHŐ (9Nm qj!XҸyopފԁ'o;ClbR .Z}P刡l1:0&$O5<9.shɜ!̬-LH(0ƘN1O?`z֧$f46) zI*8⨙[۠}mP@ëCf,6z6bowyk| k9ƀfn21s뭭YBTe ?Qf#X* Ul2rl* ;-':NS|ð&@AH}qn(44- !ϊ.VT PK9NN^@eccal/make_match_panel.pyYKo6W*PYEb ½豇7UN ;$ )!ədYIiFDM%Mv|^TL2y%d;)j)YmQHʳ6#s& N.r#v,gb[LvVE(n3A^h' 4Q~llKwHކ!-5+`k4#"`?)4kRir[]UwYnwr zN92Nz=+# TWY@E+)D=INKm|u]|`bȖeX-:;MGˣIn3gyw J|@ ǟA*Ux飙vRB_(^vt!2;Y+,lBl03@e 滔-n) Q8@B8g4y>=-3vP']2RaیTś8ڡVbϬ,ZJ#v@=R`HY)1TCV6)HNuV`km:KXBUrLitCs!6| ^l(7=:-ITvf;AتQNXă֛J$JАSr'cvAY.^=?޾y7jd4)mv(ȫňh\mQ}IXrlDCwP]=+2 v#7׍k0y=%򷬷Ty 3"  S# TѵxB}̝$SlAy28VpH<4Xy1X}.P-Dc7XƐ{wf@G}񰜆odYBXAm*V?&uBf9~X-H318P_$ us'zPG%Ei,9s }*Jq9q2A{^:*H~ն#)e*kG.Z-nJ!2W 5ED?EN@^lVty#0e%^`&_kV *X 09^l e0șխP{La<;PO.nn"*9.m X%*zH?-P.=J<rOׯMe&[^oڮmn U]t^yՐ)}zs_:^L$/)0 =w;DչŽmOK9@3'ANؿnv%š~5^Ygy57Sˍ#6|ݻ@t{L߆jVIZB}'NQLe?SG3I[/v[Pk暃:H]P<ԯv+n(G0 !jVǒrߚ)TֲK Z#oUבe2ڤi,?cb=sš{Ӟx|xo nnffU]r x>KجL4t=hO"nP?_hTTN@х|sq=?/ _mJa%G_o?ؚ'BxMtGRPK%-N+3hX. ccal/make_match_panels.pyUMs WNco4 L`8x߻+Crcw*ѥB}:)InIZ$}ClR4ևXRmgzڑg-0I_pQs̆yS[Ȟr'ju$ICXgI &bnXmWBaǐ;zgFӐ\SAra ot-PK| 2m'_˿$K+Ԝժ7XHaA;@a".Wu5JtI κ{*{!4T>Zz9DGQ#R4?B,Dn9Wcl-rGs2>:7ZrR_sRPK4*N+ccal/make_mesh_grid_coordinates_per_axis.pymR͎ '4>&E*c;[A3hTn@ |Ps\7Ir]˽40,3p1Y!^Tw-$$-Lp*XKg3̄P-[22.գ㞠~1[Β [dV2S^*>>8;xk:+r{28rU+62=l G3q*[\0+c?t nԹ<^HP_IwˇN/PK9NN՛gccal/make_object_int_mapping.pyN =dL|ʂʏ] x[Om_MqEљgDiI~_8iAc'=\!ĂW,A, uIH(p]YP=}I61{`*%Fi}fB9 #hPK4*Nccal/make_random_color.pyE De^෈5JQ@/kIgfaq ó"b|e0]2Z UsLq(ĕ1(xKRvKl(ޟ|=_ޏv?Ous)(60 PK4*NV+pccal/make_reference_genome.py[k0)D冮P -$m2}ʒ+M>ɹIu |չ_0r .] J[ Bd m0o|D&g9?,HʔRD{\SBу;3 4HRO*N<|+n00 VJ-%Nݢz?-)~6`Tfu3sj-TFWa<"~ ]\ن$4da.'YM$Tn=dTqWO)VH;ΐTVUV5^T4нۚqcTk;vmXIe@Fm{7qX&OKc8SLLTcr0v\]Cg2/@p IOMޜSUXTlv6 mFي(Rp[kv>MUizP ^5SqpY * M}3x9DӘv ub*ѮG [(T-l$ PK9NN & ccal/make_summary_match_panel.pyXK6W:RU"]A4@S JT,^鬵 HJr`Xpf87c]STZ׍hjm:f\h&eA/L#-!˨ Y??|֒gp bfXTU""=֬ 7M+"\FZ'F.{6婪9Gڱ53,],SVgpu;[oҦȜlsN](^Ҿ9 Pd߼ծy GV|9 |E~{ {zdxgtpQT%ɋbI!.Go7JȟjsP>)4'*<,)/I٤{3vF?MJAxu lH2gr@/1Lu~[Ҕ)DAzզ)- =oc;%e ` KT:bn%Pв]Jm wgp?z~F/6!`Z[&yS @enaRKR}NjRZǦAX,Clf δK@BN-DIOF"h* 1л:PJ'Poߞ z֬hQq@$rx1ޓ>wn }=[VA؉-"@KRD%8Vɷc@,F%"h# d(lJ˕.K]j+p85N[Z0KhRp#=Wxڶ`l눙g1^&Gԯ۷7\ xNbk:U+suA[3y=]mhreFO+Щ -bܱ-bޯ jUdYɼl$]{6Z z=&σ7 +;O&+PagZ7S䝺)jPk1!]69J:0`PK!1N/(p;ccal/map_cell_line_names.pySAk +$\Cii2".~KcH͛}O-m]aõc \*CZ z^?.{]OЉ#WܰbJj`WўaeΏ8MGJ6zKhYۊt.,yɹ"/V* ` 7dmk&dSM4Å6۩+T X ^))ǣ&|*%Zo׷H[rqIL1=7XX |+sI[2.#c_c?}zٓA z2PK4*Nh$ 1 :ccal/mark_duplicates_in_bam_using_picard_markduplicates.pyT]o0}WXymԒ)RVm2rްM) tH.s}?Ar$UT/%h11z^nA. 0TscQJIm5 8=WqxÊp-ephٗQe4GoUeRqB- =d c;vq%~,eWPtd4dĴ|6/j|/Úi gfȲ_'-)2EKD>N mA ڄQ-Zg\5AZ LQ2V yj[]sR'٭wVC5kj@g'^A{hE;=w=&l]g?EQh5,D\XG`etCbzV{G0rdth@n2(/@,Fì ,WYM5{W ~i }5@OAk2Ϊ`X)UhV`@r-7uEfW"B\+(Tӌ7l2q]릴@@5i&-g*'_::UT6,͙Y.ϊҢXZrX3ȋ35ADEVABr33tᛛ=~rC%<}-/e߲m?Z~yt9yU?PK4*NSez!ccal/merge_dicts_with_callable.pyA0Eb B`k+1tZRPg̴XA&dezveW&``& -ܟӴx'eۮORxx=d,Y/XL`;sxפoG Rq%%.{=W:JbU˵ŃHAFv:g @:LPK9NN~&:>#ccal/mf_by_multiplicative_update.pyMk0 ];[a0Jpe3?A|8c%ңWҫURYmӤf[9++PO2%.<$"gul%ƀKod r>*: _a-;doo4zcH@`;q AN[=fwVI:|? 3syyX"g@u&PK9NNK Zccal/mf_consensus_cluster.pyWQ6~ϯ*ʱ$?m]uz\0kk 0K $61YR=]^o3 vT%]Y(Q("FMj*3NRE -Y~;lE*LB>a+T HZuIt 7~7ƛhX#)B)U♑ΨbD*Sh#';W:EgT֓#l6˵״-mN{v@1dD%q  iﶓP3!UcDJɪJ2~m !##%Sp&}-cYnI2ѰTU͑TqG%a!zUiz8_^Q$AWMIUES~9†aho?%-5~@Z "I 4eI.vҏn;j.W\BPc Ug46ZP+aHHMGd)'UU׻ycg4K ccĆ"AZVc|c6_@0= ֕&Eo$#V͠O*R˛$ 1FKUVӤ I^w_ӢDwk4Oػ?' w%T]i>€l} F+M֑N80-tE߭ v_/M(WP,a)o*).e?DY~3ew> milH_Ft;񥈘 ~EsNqO+72 ѷk/Yn|d|8et<+kc3>ظ2.{{: MC4e/h}m\18 g6^bO3$,Y9Cƒ4LupO?9^8/WR{tߚ8PKCN9Uճ\f$ccal/mf_consensus_cluster_with_ks.pyWMo8W҂<.ЊJòѾB ^$|4FUYN>Wfa]$* ݈.cƒ bQM4dj,Zfib,6=ehCneZ(=T0%y.HRdWWW֦hY"[ k}=qTPlIQqKw沿U(D*4M> h 0jPQt0"8>=|z+EeÖN#eh8 =9Q"N%{jĉ9U1?="=9nxζb ʩL[D*R:F(󩓣[8S98\g%zd:.vC8|1#٤L 9@phxu!]R ߰v008ܯ{M1oGCRI.A`@Q6+E]~0 @o"G5jxLu%jgfn!H˔=T"3*e烆#dF؇gukRuJ1F˾TvTu ; ԵjYAD@Ea"^ׄ "d%NLsz .QH9|2"Ƒ~1{lKTʿysw!SÉ^vieYӷTdjv ·[3:+ԑ'GMP&B/W\iQ|b((52~^7,E%$zuwNב&:I3Ŧ:.x%ε#Hw񷺻T=1.rl:/h/o>vQu.aUu'in64mtBB݌Ҍmp\䋟PK4*N+mZgccal/mount_volume.pyO1 a0'a6Ţi_XQhKޯĩ0JGyM kJM7 ,9d! ;fr 0MNɣU; rŵHkUEۻSfGBH>̆'\a1[A~;,MD٤ר>:O;i fXy5PK4*N%ccal/multiprocess.py]NI0 > !ȱR  MMN/*Yv+IZ CFFҐQHY2ȑwLˍ}:Ƅ{֊Bcz(@j]w cVS5e P',߁!= >)a9AJ(X6SAZMmkA-3-r<]99J6T?SzAsF]}7Q},r C~%<؍iRqT^[ůwa=UVԀ?3-NOEzI PK4*N+ccal/nmf_by_sklearn.pyMOk0 d1vh&0!es,ؼ$p1@Flc#O|R{ۯ_  )dsA򦁬vfO$|& kQLppkPK4*N\bzccal/normalize_contig.py 0 {ӊËAaDj+iӫmN_/' &hR$nk}.(ȄȚx((L(xØ4Ry7rIIaÍ/?Fс{ٰ6W^N4c\6zPK4*NA.ccal/normalize_df.py}K 0 D: ] 7j%SCl.iO_'%Y扑DF I9?FjLl{uK~ YprI+I+A(pPU¹HXhtV-8NV] Z5?ǡfOPK4*Nccal/normalize_nd_array.pyK@ =E L+:8q^)`ˀ`O7}%8#H1Q U4N3G87Dh{i@50!*tBS%`l:V:RS_d`(O0;=[SM/>őm1V $elyPK4*NjU+ccal/parse_vcf_row_and_make_variant_dict.pySMo0+,@EH:Yi +i/YbT7`#>m{mc l߼ySuɏ2|8>~iE7?T3|y8 hISzp'0%nȋ >]ƀc+!Q<  )\D=6CbDXlq@Ў 4tDȕ0^!<OO0_MiIƆbph]J=y1]YE;pQm͆m o-U'LbQlŬ@gWRTP?.g y @9Q_;נBu}Taa]Y>N/]e1rv4^?.ǿuug瞽|9IщB{*m ^[.; cY=lh˜ ㌩ i[K=Fnipu@j?I'2k/wh_,ڐL ݳuk6W(eD/'M[SoԴPgnݒ5M}P{PkCjVӎc=PK4*NOqccal/plot_and_save.pyAn EbU,Y9@%oIxT rBl1!jf<>p4=km"G, *,y)Yi!NT$NyG#5dЭr!"]@lz-.L.6cI5M6jľȒS0U&Y8k]|/T7|Ay Rs߸`X!aU,6޽w[PK4*NxZ9g ccal/plot_bar.pyV[k0~ϯK^c*AYar#j[FV[c}9,%)luO:8kgqs˷oom:8t5nˢd4٬$1πZCt7G?XK 멠-j&aMq³+Aم2NI+6@sf5I/[/o } O.{틴tIeV&mUVv[EEkRt8(UwER?ϼJm9h@m86MD)|@*9*mi iۄt߃ ^8<^3QL͖qel.a̰ <2 cK4i(S$*GzHXi<gP?O%fxFx^(܂2k\rs~|6OoPK4*N`1t ccal/plot_bayesian_nomogram.pyVo0Wx`bˤ4uTr X36MIChs~~>>AkѦR#Qu2(W-ڕ3qD2 BG8Dk9RE%eCzPFT4I̧@g޺ioRPIjgpۭ%TpŠV Pf0rsnX  >BXX_=OщYaǓkFZnNy2ebW9 Ic% !C_ǻCT́.Cr26G~VɗK`9靐 ic*/gԘ %Y{x*@? VJ!~y\բc%7sOCt2KkFzٰt'O4Uv$@Z+ټ1x4d5 py,tt7zcZ\zlqC%f_|R/zBG0ǵ]IyFSړtȅjONXַW-dURt}}z/:Fv٠cqHοPK4*N~(ccal/plot_bubble_map.pyUKo0+,ze(|ޢyabMkl`%7lD!&JjYjz"Yyos+Δ㲒riTJ:XkW:F˄AAdt ZG2'Se@HohY~HxzS*AZ ڒ['Lse*ݦЂ93iT3E_M}| ]e@F E;tk*h xR(ɈQsd쬣7 ?(Wf\h+za%%X$0XQlUd^"t.YHu=^ YpM!@jUWNZMFC33(o#y?V:^_b[4u_YXAx<꒯V7 HQ@6*G"u# :;'SCV,91t;[ LYfTSz6.M }j #%^ߎtbUf;>P^p'd2(](Lna<W&ʽo4ەDK,lOիx':tCI=F0] Js8S-+8zOΧ`-ƌ\2JFv"IfPK4*N-?ccal/plot_color_text.pySˎ +Z>E9Gc~ ,ִhwמfQ+e\,RmVuT]<:J- ?nBqXoA SIy ۯE;I13Z8iט'E,UAzM.JZ|.YUq3bOTX9?f_PK4'INAccal/plot_context.pyYK6WEj]l6AtjSMbAeDA7vHҺTۚ8ΛE˪>U%UZ]'IPU! s/[)zϪ=995)G uPZrR(^x&GmuRD2$j^kc BSVnKbX Yeb1֔S\"hnSCKlC^l 8ǴD-O{)zC:6$l ȂD>J9d~c PQF;jn.۞owGhΏHh:Sn}gڥyU5+Cz"#_DER XqkP;|qE,Aƙfę,剄22#_Z< Y)<z4 M%I'C?Fx9>dϑ >jB1*KZPWA"-3WFn1r'@eem1.h(HbRW1ct>@b;x!gt?|R>{VZ]ն9T<7`Y{Ѳ4Ǫ(aQ ,5O̒{kR:a&}dQhqd VlQEk`~LY34]5FxQ6ZQORGs$- ÏKh}V6 ! Jqf$NZVҚ,&x%ށuU{KMlKr u PU) ps=I+(Y~fz[5SE?ꬆ$8)ZAd ۤhﴱ5M3luZ&SϺ*"j"eL!bծ`iʔF\/93 (daZ}/sQHM %z#yDduzY!%} !2*#;DÈþm5(Sp2L5V HF׉FV^gxp+F,[8 /yft֞6IJڧ!ޠ o Ɏ3hUݓ1♍)\DCax!2g>eU,c<*]+Ptۺe`+h4!-+Tnu=$ aT TF^o?eqU4~iR+NNiD@ ޑ4 3zX"E%Zأ߷tڼ`v?wTN|dEKRN.ej]bu_^ݴPzSKV$e>IU*Q 2f0 ÌgC .$^(B=`2lpV.vuٓ6+L .~0̑PCz GOkGbFS=cf{cM>P5.H''w+%{ IO-BN-[ئ*cI}҇<oF=ЍdvCҬ.!!\`1q%:m ;͵~5IeKK{J'_ڣJ%&ЕE 6oTª s>ZPC Yx!VM~8Ji2Mq68pXnb窿9-$ؒ2͝dlzhGF4'F2Qp%͞>xTcFeI[Z6^jm%5 >jz`duIa!?Dv?I|b:bG"1=wԷn"O2ŒVP!ww?WkdcW 0`a077ՃhBfbKeɾV~mP@[DGҰ[T9jyJɶ yMI Gy g\SV%A,%#Oy^i2i=>tn$aT%u.FAm665 ѠXw g+Kdwɗ[fa1( 0ow/0h(9,Kz)jX.* VA yJ4;v mG\a ] dQd;]9l] Ok56́d 4)sls}|"fyv ̝ JP,}]^fǭc3Y\DSk3(̽G\f5.)#U@UVZ߅Ͻ:| ԆyIμdL,Mۓ|Rc@8ouw}0C!z1XѠ-XJ_PWfv0,mź&^ހ&助LA>/1PS5E|<fv1L*(R~yi,2t&+^;]X\͛#? ϹfKW,~4[16np ,y3YZ12 ˧lhre+EL.ɣnlyvE}4.T5Z,7ۑG !,h5θVit~O=<G.JuFUM ȘeYJ2c[~&+Tb1rIChgDOURsSaLT{>2xÛ ""ة-eP$Ն/^WO*dX,⹡nތ+v)</77wӇn^ Jq~a\TK/DC12m* ك o:LvYhC"L^s^[3~Ifgo=+I, FáK=^8'M„,o[Ɏ8O緜(EVGSE!~k\=Jp[)N)4)5jS{vJ!KS"7km_kZ|Tf9۩v:zePK4*N>M]&ccal/plot_table.pyTn }+bZ^Q bCeIUxmnbsrfA`eԓ|fBBH eN (^GZ ;Խ>cG0fZ  dͩ_uZ_E?."}wP3ط3AfCF\u<ۓ602i'SM`ubEїӉo2+3;@"S5_zZxzO48'UXGPТ@N搤-WqrR*O<~><c']9fаh|}Y4K,Lph3wf)F:VEgM\|79֠5S:w,sx֗_)4-2mxmi&B_0=YyWfb|s-۷#PK4*N/P@ccal/plot_violin_or_box.pyTKk0W :BB-Yd$c,V4/d aʠBQᇑKC舦3]Lȇvr6R@ KXG(0הQŌqjِ?3><7pHNL5j7ѓ82̙/dS|F;X?bir~C:8$fff0kb5^*ZdyE 쬞F /@o(pe47q.PEAP?lxk[@9XtvO?Ga(- ه:/-[;q;284v6oj\Q\gQ9ghk;5ekHc8Gz9ֺQ3gl9ۖv( qeH0*JaT2y^sBX5 Q U-qsYdF$ c UDc EPBÒ?%(-M !IPRG *_8a2 )е1U&Z'6*C~}c *%z5*c|<+#kx7꺴s mHhp#\2*hY#"09vg.DSXZ`*>.+oA6I qWAdsDȚ(Jrsע3 =T -% Kax׸E~<- 4O G?x-‹J7nY-/1!mVWhtJe-wo ޕ>A Sd/3%{T/6LesG-yVy L'dSLfsrD%4:%B>fas`5lcE©ƽӔ\M+ܷ'|κΤmJ;zШA.`GfѪh=#v !p4j B鯎":)s{M)Ȭ`-w^_ߚ&,g:?yYմ|Q<kQu %]I0n\lEgKd=RwkF6bok\Yy>69c%\-B˜,j6p%l|Bvp %_[t L֭Q:F:TN˔=buMUӄIB:LsMUӄ ^wM$ҋZX_PK%-N;Pccal/read_copynumber_gistic2.pyU +OFBVڞ6[+F a&xRJ]Nf NZ`i`Z fn?gY35EBa{̲&ɾ=1ϼ~[{^83:2D D$fŌj ߧICb`K0- ,=Q{W-( F7D_)?\?$N FR)8$S(Br-iEm~RhYM?~ӣ~GtU&Ga7䖵]&I;7rZnaIA*;#s$r3^G2&ƶ-q_%-Ga7H4[CJ.~PKA%-N~{ ,ccal/read_correlate_copynumber_vs_mrnaseq.pyRn Sh{/F)<8۴__BDVO06qhb@!:=`Ԍم7d%"htgka9~rꞔCܪIa s+-=-ԥ۷o” xO'K"\%ZdٲOl#\`J# P"Op,H+§LnQh ;2Sj*@^'}|1\Ké^k(z{>׍ γU[k.}jؘ", on17f2KF_PKSMNs6<ccal/read_gmts.pymA 0 ~6]:w5ە_=x燰I3hH$ H?3 G)jZOAt`^߳&@XwX 3  -KU#a-܂љh}@m0 Cݫ"͖@GYwd.$/@^FfX_p2UEn?} Hc ҆צP쩭^T8ٿ'}%2qYa0c{^6d:XCgvߤ5bX&RkiJnE˥mket]:@Da!ox6vo! )BYkmy׉oїٱ;7㤝 ngT\ rJQM4{;{"fZՒcF #RQPxsOpro{h/Wެi~ Jh5\ c^>~PK9NNwO! %ccal/read_vcf_gz_and_make_vcf_dict.pyV;o0+XfBѨ2:(bD9%J%i'#E-{wJk˺U5*ĠF"m'%H0"S䏌Ҝdy+7oKc$-SىST HThTW:PU\%[QI. 3F+:w/y/w9/~ og!W)U<F1: p4²W-ϛJ plgØ4Kjp[AB1Tp!3O}!:l:6u"j,bA,+Q*c~0ys4ZS}|s ܚ1Zeɧf.sVd!:bYf1QI_~ J#*,!"k`#&2SՖT2/Mb܀}p 5 uڿ \cJn0лoxS$务?勔A{#ClBz|p7)ZGpeFqzKH:A>UO-fRRIal[0@ܽ8eּ&pJ5ǰ R!u段 d.+Ә{6mrM@s73>3~&SFGNXs4yW9wPiUKaA#Jc$kBnz6yɟk8Kva.x5|d Fybp.mh]*Dx5h\0 )Tr~f|v?PK4*N׍ 'ccal/read_where_and_map_column_names.pyn0E+#EuS!?:vRĿR:$ιgqO΀@(B?8=mR VI"95MB鈄BZ%sh``Gտ(>"MצTR>|b/yd]%U ,XzWD.f` N<nA$r[˖ڼ9}ڳc)ɥ{A퐕\\UH ;{,[,OݠCd?*hu7b HoPK4*Nw vF]ccal/reboot_machine.pyK+U+*͋OMKQ-/*Q@JIMS(JM/MLKдR$Jť)PJ\PK4*N=9ccal/remove_path.pyPKj0W U!5dFr({,m\LB}48 _͠SP(bݘ_.1ڧfORʠ#nٺ&nG<鐕2Hxb -d'!ުaq?0|X6?w=FJ`– MN';uHͼME7PK4*NU|Jrccal/remove_paths.pyQn '"E}mj@E rحVQ<`3?Bo5܌293L6"?weki".#d;x|w c#o0ѴGp*0nyb+ɒ o"ґ 2:k5L PInѣ˴sg6AGJz@~;DJGwuBe/du|cv*PK4*Nx!;ccal/rename_chromosome_of_vcf_gz_using_bcftools_annotate.pyTM0WlpZp!^ȥ'!ےIfNCB{%q(5vw֥5#UT` UN DtH;m';|+X dVXxg{h^]U2`Ᾰdc Tְա!A) „G\HV]Y㔩X^H|/cW_d`Aj^Ols+)&4hE,2ul١%t).+?9 eC7 i'߬ka#iJBQӀu loԇG#$\y%8y<(1YҚiu{.)#$[+GO֏g+'O/ʡXx p֞ vۙrxvO._K:_$V]=3ٕS'1bPK4*NdTa+%'ccal/replace_bad_objects_in_iterable.pyMOA Ɠ$xZJ!,WziN[p(Yc dA@լW7. )1yǞ75ԩ%;*iW3j Rғ/ՄEttV'1@_<(0ZJⰹRPK4*N 3ccal/rescale_x_y_coordiantes_in_polar_coordiante.pyun0 D (j{ķXU%No [9E73n[V]V\Q)5l¨ d&u'I=nѺz/_}cTڢʋ*meXGs!)r9gu;Tk.7WMR0ךL u z%H7_VY6qcPK4*N=i'ccal/reverse_complement_dna_sequence.pyKIMS(J-K-*NO-IM+OK/N-,MKN@hZqq)H$IBRA,grA,?ObVQjIiQ^V~f@X" y0L PK4*Np3I^'ccal/reverse_transcribe_rna_sequence.pyKIMS(J-K-*N/)J+N.LJ/K/N-,MKN@hZqq)AQjIiQ^QjAN"PRR&PK4*Nsccal/run_command.py]1 EwNH9A%Vꖡ{DQP IC/m)(`.HYI*(.`bfL0Wn3!WO7hH.)1; W*p`y%#4iX PK4*N?;ccal/run_command_and_monitor.pyeQj0)ž PTЛ buSL$>~2?O&}r#xqq,Awݵ֯0uuauH9aw̚(&DG^> Kj)#`=t ݭc$wmV݇Zm?$BchR"[ A`{?~t̢sG#M!|ROUU@a=.#Udԧ12Ͽu&<,Qh)䱧܉m?PK#>NBs(ccal/sample_series_randomly_per_value.pymю E 'Hb}-hؐ(bWEa{А+]>d^T;M=˙89 {-PʪdEAp& dd #| 6xg,e {c#ݭɟoTY͘Ԩ+@ uJwC/PMzO i:z6LFQ|zMjj)צE$U2cUW;adbbDC֞KPKQ#-NWKOp ccal/select_gene_symbol.pyV[o6~8Гrw "k@MQ1xIuoh[50m|΅*@&v Pp-Ifm"hM`,Y$HS8 VaQ3rT %.^UfzdOïs|tbxj͆gISƋƪZSq ViJ@JރTrHUC\fɊ}ϩVUtd9&'t=\ng>2M]T8+[F/P|gP^0Pa?/hW}L 1rb1O}wpAhfXݘrz/Jy,CvOYXSE Oߍ&]G^ZYFy;UU-\]qr-B+.1 Nr"q R6]a@qZϷF9l'^N2L>܀i]N޾;_˗Eug\4f<%H—Pԙ6u;\qO|8Wߞ5J-9{Ia彉(FdA5QV*]8K.X'IG";pY*1~T/E `utw#U{bcul~OB#UîM}[y~l=a![kV 3+,V Ц!˲MT]f\'ij]jP)v \{/a.{4YhCaCv IgKr` ʒՖ>ex\%;f.\O%mO= ;}ƻ;iMdXRYvd#u8,d Ԡ{ /-dm-68歃FG0ʰdg2'%!:.ëƶN άb@E5`L0TM3 xPK5NNT!ccal/select_series_indices.pyW͎ )ح7lOB@/-ZY4L6\ iۉc;nU"YfVBٔJij\id` XԀ`R._&ȍj-)3WڭUJB&7ڍ%c]dY`i ,zwZn4z1?DҜmW[㤑aj\q!rOVQ<-鞊+I\o5,Ǔbh;-keARYTDn9Q]S%'/qP*pe\F2  EK|3t.i9j?U4A[{BQ׽[$$5@y\\\J>&ervcGu\wDiE-i1|P.ێ- ٗE rVYts{]i߽( ^!ҭB5/&[AXcN ;%lGFϨ*_xB7t{x> (S DQMMYYp MU}]vAjgI).e39gr8i`R)H' Qǭ47+zzU\6a`朙sXjɑU\ImQ.ENy_(1+$knmK.Z/2Ay=E@IL8\ =>R$stS?v nl.UAƬZnLjq 2p"%9s۴6QwZ}?ĺ]FMd ޵s}NKЏeV%jm♾M͵]Y|I:cYp?V|f"샂mSnVq ,=NccT[o1aRDnB/av+/PK4*Nxccal/single_sample_gsea.pyTM0 WD=hZV80uwmҤ3[;M|ٱ7 {̣cJw?2Aw_ζ S涎RtBxM,jh(-'uGg G0nm?xAnœ^9U ~n^/$2$+k4ƒ5ó5^8ۻˌlN5{?w^QxNnGq^CHD~9]ec6mD|%?XT^˅ʁ\LTlx1w{^n&"/%^PK4*N܍%b8ccal/sort_and_index_bam_using_samtools_sort_and_index.pyR ē&^7h061V5 oFQc5h#Qs%V3"b-J N(iGpLtvhXOD+;p:+Y1gba`FBzd#rB`yS-e.Amج;JosؾL_F'?P:(>H,HHNfU~;A]>R“,g|#/F^1j=|IM1Q\Z{_]uvhpu'-K6m;!OY@c4'ϧI+ dXC+/^d Sqk\/Q <28RPK4*NnWccal/split_codons.py} 0>oBD$I|*A:ݝfyl$%cS$z$-:hd㦫Ͳ!h#ŒI]&R.vHZ׳v0q@n*(nwǴ!6뤗ӲxPK4*NiD[ccal/split_df.pyj0EKVrkd+en1"U6^ɏ1B;;;#4|o(R3 +92 s R]NCܜ œѹα[%^!ɱϯD`SWQb 1HcS݌ll[mBKq{/(+4#gi~bPK4*N"Gkccal/str_is_version.py] 0 DwőIZt+[BhJ~xfYG%)K@|fT9Br(r4k1աAw9PKCN'RYJ "ccal/summarize_feature_x_sample.pyVKk0WCJ&RL\H[r^ʉ-]6]WSdoz k}hRsxAyE vϜɞRmURd%3eb6=ۓ*ϱH*A%HrH$΋Pk:wQ,c_Vw?$ $p{Q=[ZdgD4ZN%JI3?],MEQ-ee=DxQERj([TꈠN0(+0.@%4bƔUu*ApE ^ =JdE"Ұ>9ֿ$Ce0TL\f(ۓ경kF_g Q$N0H ö*Ard];G#UC!ot~'p ZR5-m<@} deL/p`ja"NZwN j O$y@ޚU/ BMI mɳqkQ4QA؍CUV;m젻 sH~:lAuЎgUd}l՗%s9(29mYh/xy?L̼S*!W*ڗA){phI"Z8~ZWg]o&+9b Ew$JnoxAg;v~оjkdwqdl[xފO_ E,E2"0iި4`!cktUFvΔ1q+.U>n6`s' #t?m1l쾛\rCǫU!cf]lI)RJs T(,u&I4dlF[e˹Փz+/PK4*Nvccal/title_str.pyTj0 +O ] n%7QV}r4rul>I~zmcAj.v :qyg*e%G{D(0qA`ZdMcdI9dІT{|tTJ'JA RѬ&2{!=~-U(뷞UI A4muQ%)#B>#Et0k^2xl:YܣDXj!qc#t3tLWafW]y޾k:[EW$PN'[ c:ڬxx=g';|Bk̮O%J< Vnh^9R,pFgW1I|&FR,2iC6|PK4*NpWpccal/train_and_classify.pyuS SMF&q/+A mW J I: z-0;!_kBNs+I2! t@ܪcH&=5)6ӣPy/Q׬R`lՒpʜ@ 5/S+_}Xp`w*, 9ٹ0B+N%0=d8۬jReU|=q7˸~|.an wMv:(Qk/#ˆ=!eρx C,E.#sn=?׏ 9SɓPK4*N{)ccal/train_and_regress.pyuRMk0 WhC> q5GRNC%Hyi قD1ƀ}~5M3fBA چ$hA܄/뗴P@q3WxЫ (|%/1^[}|Rn"`$cO ?_?x)T'd=L\JKɛ0oR`2~705 e9T8K|*gZ[e\b%g6Ti'JӍ)T7&ˋziJTKa0*ZXPK4*N~xAVccal/transcribe_dna_sequence.pyKIMS()J+N.LJOK/N-,MKN@hZqq)AQjIiQ^QjAN"PRR&PK4*NO%ccal/translate_nucleotide_sequence.pyn wy%7jJ Qdt*Dᨨ=p}]q !8,M򩑇S=S]{<1;5|w} ` 1j6Yő1å6cMgČ1*A309JmH7iIu Oe<}Ɋ6!j=;no0$Ƿ$V0mM nrQ9H?$"%h14W {x:p}r*x$"17Ȁ>)u%J BpQR-r9LGbHNsu0LRםlPhEsQA+bF.XJaxX(.۪.8!GAuv$Z9bޞLJS{=iyܚNG7A -v0ȸu#UKwO۾zxVwAtkT2Ŭ"IBU0%uohX Eb<,u'<7("4w]htt& dwٕknyNo#R?rD55K؂?d;O:q4@tP4-:9^^ y%j)$N{wbKmFS;ڄb:4a}MuLH9MSYozt'#lu)P9`4n^jIP#"yںaM w%@UW!f(PS_iԬп$T5ǍԷ@:4mL'ԏP_wPK4*N̔;jccal/unmount_volume.py1 P CwdJ1i kJ%c5H ʳbWj뜦H ybKmb0[]-^>݈Ѕ5&PK4*NGgBTccal/untitle_str.pyKIMS(+,I/.)xM+.. (J-)-S 䗧ih$&j()(((+!BEPK9NNxƶccal/update_variant_dict.pyT0!',l{Ye$hR1 MI'l3y3]SՉJɤ( ޱ߁Rm: S 2\ jʋ3U(%{EIh$.T۴Ϝ?FIW״3 `i^Xr:#OƓ$GC[Q|NK$Ȝ`_)MK?.& L /j&Ա4G0tԱG#`ٜh= ͑pS-꺌">j~|?Ƨo:DkA0Y )V w`#LosVjL Z=[lOyf- hx;o#v? ߓ ;#OzW4Woq--9й2Hۘ!)KPK4*NRccal/write_dict.pyUK 0 D>*(e"V_73.d1pD̉t |koFla2р:Lvwil~aIK{VgDoLו)y,A/?=Kmm1zlGxb4BTіPK4*Nccal/write_gmt.pyQj SOJ칐Cv !!Q馥߫IAy3ooL3,}t]9Hkh`$i vi6.ޡ|b |O!5[fz]:.o 6eġjKI'6ҿX cFR9XW@_Yl07(2>=LV#v5zXseem 6z88hp&5#m5tB?E+ӛo٣V*lmHdz}Ih:`[ ⎘-&FW3=eW[;z󃩉#ؐqg@P!0 ls=źθ6atԜ.Pv!AS7wYAD:֞'1ǡGI=a'S֏앢նo %r+qT=e}hfk u?qwT\0s"_;6*` gdpCCQfQF\1n)'0F2{?vIHN%EAdPa%_De:WaU)mlj#dV"RKT',y[tfC\B'J3JM C iOP9(Fk7wH/,eQ0Je)U B, ks""H ޽P-+!D'U",/_PK`=NND5ccal-1.0.0.dist-info/METADATAEM0+rCR PVYQ8[64n:A}ޗ(;Z->T ZҢ,OH`EbS,宀$X}|tTJg9ϒiv^Uhd[b0<|l%Y4Y{ǔv>c oKx]S= PK`=NN8e\\ccal-1.0.0.dist-info/WHEEL HM K-*ϳR03rOK-J,/RHJ,./Q0363 /, (-JLR()*M ILR(4KM̫PK`=NNΫQ"ccal-1.0.0.dist-info/top_level.txtKNNPK`=NNv:2Xccal-1.0.0.dist-info/RECORDYX-~~K<DT^}/FUsGQiM6{fεu-Q]ͻ6!-I.A*ԌGQqۣ?/<=3^k0/utJMl fBC&pT@n&x%n^W &h ͺ%4 Vp [U[@Hzg*Yw o̫X4ugNuؚeA>T9Vhvo~xW2` PB]k$t ט tՌ'Is'uReu8^ǜcTϫDQG)0vy 0?`u6Gkx/nq, l{YҘmttXOFc g؛CX߭9l^nV.3@}> [B}I`La{r^p:2xONx$6:EN aC+4}fVj^r}rh+s+T4jaL\'R+FK՗ 5~ 7>9}Gyv }+[]'fku? w)P><]#@@oH\ }x[}߻H]?wdgƞ?6̾Icz/I $&q9C;|sn[;֖#tEU qҗ*;{jxîQJ)ﱏ&c#nZ?<DzhWx+,<ċ#*k_Qikȟؒ۫Li{ D;\Rĭa[>ͻH\w,פ#[w@M^h?ؕfћ=h?΋*F*mwt ~}ve2FKw %1a{kC{)< 糄p%ewmzD3;.ݵvWʂmqª] Oj@QY6uU6=[VxA#&UBZi܍V!P'XkWްǫ}eQJ}Sc^>$؄%SocfخL".&qGʲƩZDC~.}!k;9od&Wƺ KS !y m ÀfGxG ZUwRAwUNƨOx M7#Ky]MXs o$[Tnc@EY|JEc[6(nBZJ/U{~^=65}JTG61`ՠ3U}H( `pG!-x[m8eg]SV['vLy^1BcJj #Xj8QD-9.8g\eƟ쑋iA"up9YeZf%JQo9ƊTR^&r葙'bĆqN W;)_yΚβnJx߉;OFCC\BU&VieF̏luDo%+\|h2w/CyILr >exڕXڕ{}E]'UÒq#Yh/_e`ȯ~-'lecC\"4$/|C0*jw/E/ȮndC!3N@H; Iū Q%som~*4sdc"~Z[&ȉcK/ƙ7)%#YQutnJFmܧ񗨻w3PGPIlySW4 QvQQ;o؟}ɭҵVUDZ+QVdpS!cYXz_aOXeye4eQF3y, I F<fD* qOWm5v*:WuWW/?Z9=ol^bb) e_<%c~~Sũ{%>Xroy06{ ynjK&U`\( x[rle,oK%I;.f>?$gf7@!i2 u^KE.-|ԙ 5gx >8wBMԉ@sn*zXdۓb4> VPӒNcN!V 5#*i^pf7S&2TJu㋋7T[p"??+1*V9 .,z17Z3[< :ꅸ'~b+>[RJ `kcK[d!r{c"U*>v~Ya^mT;q C)*Òa~!B;B _JJ~>Mf ɬ j/~|r$G`iuǮ}7*(xI2Y#5XG@^<[7B^Jݞh^Vy2gh oʃǩT}@'(2^T-ax5AK )7"ϖf{Q/o8j:R`|vۮW8y]7̹h?usy>`yL?siR?O؊ņ'Oǵ[+U兎ዑP#$.8նX]I[M_m 7bwwZ^Cp# wSw=XGcq!jov wH¥ȚAS'ce^GGn]u5ʂKB˽zXgi"^7CEzU8IwQsgx8~jkMVYlV#z+@ AM:q9eCaȓ?ZbE\U:Jl/xT7|AJ UoGnd:.<a|` kG+3HSwXb?LK6? ? \h\"{}D_hMe[J;gl^tuvoJV|it(pH Ͼ-x@0ߊHwÇln=\VdT %m`'+R܇0b I~1MYG;/-uP*a$n)vDR&l;lV|dChI|kP5S=9+4vY%?_ ::0X9  ފ)WNW1UୌJ9vCt.L%b8/kMtW!%L-$PvUCƖ ?xn>h pPzO^~ O' qUZQKbh΂>޳ !JxԛbӸ&U.#/? تbOs*vy3g]LZ琂D$o[pCoϪD&90a>j]DNCsۍp|x&{a4=`Em!IbGάBȱm_݁|#{L.jKM9 V-6SSP-: 1V@gp .LOW#ב 0!Zo~ISӌL}$]vsdZٷ_b٠}j=vz0νhd \쩝sӴ=zIϡ4yBx5 4s=6dj;&С B&gr8*<#kI UXw>˶oMEB5̶! ?g H ̐*`dyJZy=͑Ή >#i"ٌ27gV"S꣗ӵjjXkG-ӯ;a*MFᐩ3.EhNG'%Nё j~M'\SӸ͕MtH*ܜ)McҹF)mt09=!RMde3nC6]̑#2 <-t +cĽM;5a2Hmzm1I&^*(edrv zVhs)Oijm4'&ūXЎ-Fso!~Zm!G]s C/^xړ`ɧ% r& e֯}PzFĴbKU͖'>R5 k<:2;5elgo_3Su)J~٠p}xʅUj/nU+xboY鶜,Sꎋf0?/ 6>~ū-h걦>EOɖvة{vX9Eђ9{Sm֪>jGE ך:HV@'s:?rEW /"?Iח7 Y'Mt!t6Dgd%Oc~a ȞbbкD>rm9rP`[CEW4lm~$zkqS]XY;j %Y_ܬ|lxRota5P$SjثVEk'gSܻ;1"+݆Gvi9(1|~pXʟ  +;GWqєF$Lu$"rp ӿy@6S<,Oeպ7PKX4?RmHꕻ{+N)֐>^|FQU:*{R43wAkj?lj(:E~9Q)P'33d:‹l^_(T⯥LE /" @c92ބ cQsVw F2=Dz2 ?VZ<->ѝiQJ ˉ`*EJHy?_J;:Qq;6;!Y]BJ\ظIU$R ~BWsT YDY<3+ B bٽWC b勷l(h>|w/=Jm= 4b^Mm[nD:ۈaϿS&1%95Cq}_u<6 ♽$vfZ|fB%u>\)Ǡ,t O /"@ j+ &glZ\,;$'GٴR^V~},AG-,PĠ|01SהR=Fڊ }@jmi(휅Y:3%=% ȠRk@^Ξq9V!9;u(v=a_oMXM_+Z; [-~0.ڍBɾ-*Iw}-?@b+1-^YV:t%Hd&V&i^S!մ=pkS q yΠU+PLg* _j5ٿ=iUmO1" ٞf{79| +Vzqi>݀>Fs[^l<># uκ(-"ʪ}pxf`?őׄIW1+ l)g3Q|(1,("^w- })^ ]^LNLܤp0j⼏5[݅/_".;~C]X/ܑ;5yG=g(w|3n .֓f<BuhԎx7VIwD(S5j4C*BH>H͖9d^̘Jz.8fNØ'ŎNAZ*^B2:f0ON2ୡ?|A5D黶Ov+v <Wb~pOZ+o Fˡƌ ?r.})7!"z7拦#G,|S<06&M>YIH;\q^ @8tyP1\ړ#Ӂӑ+# - _?֔oׄɑI!| .Bd҂A`}l&?! Wz gk)aL~l r'3?ɘRG-CB?IO.sʙ-cCL  RK*l/ sqДݾzrj5NBtw~GǂWz]_wrJH8hyI`nw-8V&|Cyx ogo|̝CW*lARb٘;x z>DGP֊N| ;^h3aJ{V tWR*x;eo3 ^,"iH، p>sa+g8+F*;~嫗9G%g U鞞<Ϛ|֡絿VE!@m1mmIׇ"fh#>%TlKP}b6MeOP|+4<I_ n?\KVʲl+ 6z肘/wLt,'O!.>DId?} ˪fm 'ipXW>n!9ۿ |~{ga[biv CYGVدe-˱kCN:BKa4AR ݽ&mK䄙  {2r*hϺ^Exexok5ox_pmȪ@AӜúJlg5yI~D;Śl%rx5JfU/c 6gk\݇m YʉaޑyUpli:-32[=Yؙls"ϼV`Xba6}4ʜ%oW[|08OL\0T * dt&̙ gM~|Yx??y L4؇'}jsuYp*mU)Nw4豆0S;w8Te! Xt!@}B4;sq0:S}p0 UJ[]1y5'V|ط ͺԭ =7uqrr4I|@u7w^绕ƞo}Y.uD.[CDZJ #va&M}!m;-[V{$Lr6擧3hb>*k)x <fvof%Q2\kH]af7ラF9v/؀W=8s҈athR+Zf`MU XSJ0߽oO> T;L1=T$eyw%9 OOۡ3FMYNƀW/h5"`yo_:shw{,F[l|Čl4p: N2c}u꾭mo`Uۿf+O37SM')>;'zaa$$ 5=f-hz?@Nq`)S^n`nTyKy$:*kA\"C1dY >xDI?V!nxV-n$EB=Y'S͛CTp%dݡ0wPK;GNZ=?ccal/ALMOST_ZERO.pyPK4*NX5nccal/BAD_VARIANT_IDS.pyPK4*NWccal/CODON_TO_AMINO_ACID.pyPK4*N!ccal/COLOR_CATEGORICAL.pyPK4*NhzK.,ccal/COLOR_RUBY_EMERALD.pyPK4*NI^-+\ccal/COLOR_WHITE_BLACK.pyPK4*N K-+ccal/COLOR_WHITE_BROWN.pyPK4*NJ[WZ$ccal/DATA_DIRECTORY_PATH.pyPK9NNό 0P@ ccal/GPSMap.pyPK9NNn?ccal/Genome.pyPK4*NM\K,ccal/VARIANT_CLASSIFICATION_MUTSIG_EFFECT.pyPK4*N^^k ccal/VARIANT_EFFECTS.pyPK4*N8 h+|ccal/VCF_ANN_FIELDS.pyPK4*Nk~GWE ccal/VCF_COLUMNS.pyPK9NN2.#+ ccal/VariantHDF5.pyPKl;GNb| <)ccal/__init__.pyPK9NN.Vg*l7ccal/_anneal_node_and_element_positions.pyPK4*NT,u<ccal/_check_fastq_gzs.pyPK4*NW=?=ccal/_check_node_x_element.pyPK4*NB?^y>ccal/_check_w_or_h.pyPK4*N{5?ccal/_cluster_clustering_x_element_and_compute_ccc.pyPK9NN'@D X@ccal/_compute_context_indices.pyPK4*NAnzOUAccal/_compute_norm.pyPKh2N,Q\Bccal/_count.pyPK4*Nɵb4Gccal/_describe_vcf_df.pyPK4*N(}FLHccal/_fit_skew_t_pdfs.pyPK4*Nr!NJccal/_get_coclustering_portion.pyPK4*N}k dKccal/_get_target_grid_indices.pyPK4*NAT ~Lccal/_get_triangulation_edges.pyPK4*N?*qMccal/_gzip_compress.pyPK4*NK~0 [Nccal/_identify_what_to_count.pyPK4*NLFPccal/_ignore_bad_and_compute_euclidean_distance_between_2_1d_arrays.pyPKA?N.-Qccal/_make_annotations.pyPK4*NauRccal/_make_clean_vcf_df.pyPK BN0v JPTccal/_make_context_matrix.pyPK4*N][nA!Vccal/_make_element_x_dimension.pyPK4*N'y610TXccal/_make_grid_values_and_categorical_labels.pyPK4*Nگ%Zccal/_make_variant_dict_consistent.pyPK9NN Y [ccal/_match.pyPK4*N[&K^ccal/_match_randomly_sampled_target_and_data_to_compute_margin_of_errors.pyPK4*No5H! accal/_match_target_and_data.pyPK4*NUbccal/_normalize_nd_array.pyPK4*N'e1cccal/_permute_target_and_match_target_and_data.pyPK4*NZ[7eccal/_plot_2d.pyPK9NN=)gccal/_plot_gps_map.pyPK4*NV8I\)pccal/_plot_mountain.pyPK4*N o%Ttccal/_print_and_run_command.pyPK4*N<}$,6uccal/_process_target_or_data_for_plotting.pyPK4*NpT{wccal/_single_sample_gseas.pyPK4*N]cN[* yccal/_update_H_by_multiplicative_update.pyPK4*N{zO[*yccal/_update_W_by_multiplicative_update.pyPK4*NV~z6zccal/add_conda_to_path.pyPK4*N= /}%zccal/align_fastq_gzs_using_bwa_mem.pyPK4*Nl쬬T$}ccal/align_fastq_gzs_using_hisat2.pyPK4*N\{ 9/ccal/annotate_vcf_gz_using_bcftools_annotate.pyPK4*N$ccal/annotate_vcf_gz_using_snpeff.pyPK4*N+q:8%Ƅccal/apply_function_on_2_1d_arrays.pyPK4*NN,Accal/apply_function_on_2_2d_arrays_slices.pyPK4*NKFوccal/bgzip_and_tabix.pyPK4*N83ccal/cast_series_to_builtins.pyPK4*Nr:!ccal/cast_str_to_builtins.pyPK4*NUfr)ccal/check_bam_using_samtools_flagstat.pyPK4*N"A$:ccal/check_fastq_gzs_using_fastqc.pyPK4*NPG1gccal/check_nd_array_for_bad.pyPK6NMe?!ccal/clean_and_write_df_to_tsv.pyPK4*Nd{O8ccal/clean_git_url.pyPK4*N@-<-hccal/clean_name.pyPK4*NY@UMfRccal/clean_path.pyPK4*NBk+ϒccal/clip_nd_array_by_standard_deviation.pyPK9NN0_wCccal/cluster_2d_array_slices.pyPK4*N#(ccal/compute_bandwidths.pyPKMFN ˠ+L@ Wccal/compute_context.pyPK4*N6H$ؚccal/compute_correlation_distance.pyPK.?NR !ccal/compute_empirical_p_value.pyPK.?NkN)+ccal/compute_empirical_p_values_and_fdrs.pyPK4*Nn"'Пccal/compute_information_coefficient.pyPK4*Nol$Sccal/compute_information_distance.pyPK4*Nx1!ccal/compute_joint_probability.pyPKBNG9V_v+ccal/compute_kullback_leibler_divergence.pyPK4*N Vjgd/ccal/compute_mutational_signature_enrichment.pyPK4*N-4(=ccal/compute_nd_array_margin_of_error.pyPK4*NX'>%]ccal/compute_posterior_probability.pyPK4*N%1ޫccal/concatenate_vcf_gzs_using_bcftools_concat.pyPK4*N?~ccal/conda_is_installed.pyPK4*Nccal/copy_path.pyPK.?N(oSͯccal/correlate.pyPK4*N;) <-ccal/count_gene_impacts_from_variant_dicts.pyPK4*NWn,.ccal/count_transcripts_using_kallisto_quant.pyPK4*N: ccal/count_vcf_gz_rows.pyPK4*Nywccal/create_gitkeep.pyPK4*NʜI^eccal/cross_validate.pyPK4*N(ccal/download.pyPK4*Nk#Ļccal/download_and_parse_geo_data.pyPK4*N;ccal/download_clinvar_vcf_gz.pyPK4*N@0 ccal/drop_df_slice.pyPK4*Np52&F^ccal/drop_df_slice_greedily.pyPK4*NFd@ccal/dump_gps_map.pyPK4*Ntgccal/echo_or_print.pyPK4*NYOiccal/establish_fai_index.pyPK4*Na)Rvccal/establish_path.pyPK9NND-Mccal/estimate_kernel_density.pyPK4*N± ccal/exit_.pyPK4*N)eJccal/faidx_fasta.pyPK4*N,)ccal/filter_vcf_gz_using_bcftools_view.pyPK;GN *ccal/fit_skew_t_pdf.pyPK4*NM $ccal/fit_skew_t_pdfs.pyPK4*Nͭccal/flatten_nested_iterable.pyPK4*Nx,ccal/get_1d_array_unique_objects_in_order.pyPK4*N p_wccal/get_allelic_frequencies.pyPK&-Ny)zccal/get_chromosome_size_from_fasta_gz.pyPK4*NpӋ͐ ccal/get_colormap_colors.pyPK4*N1uMccal/get_conda_environments.pyPK4*Ns~RYJccal/get_conda_prefix.pyPK4*N|IOccal/get_function_name.pyPK4*N |Rccal/get_genotype.pyPK4*N7lccal/get_gff3_attribute.pyPK4*N9inccal/get_git_versions.pyPK4*N)#ccal/get_installed_pip_libraries.pyPK4*NT-gccal/get_intersections_between_2_1d_arrays.pyPK4*N(Qbccal/get_machine.pyPK4*Nh'@H&3ccal/get_maf_variant_classification.pyPK4*NH!~ccal/get_now.pyPK4*N[~ccal/get_object_reference.pyPK4*N7"Acccal/get_open_port.pyPK4*NJm~*ccal/get_population_allelic_frequencies.pyPK4*NMZ "ccal/get_sequence_from_fasta_gz.pyPK4*NH)UDccal/get_shell_environment.pyPK4*Nwopq,8ccal/get_unique_iterable_objects_in_order.pyPK4*N7 i+ccal/get_variant_start_and_end_positions.pyPK4*N"ccal/get_variant_type.pyPK4*NfA-sccal/get_variants_from_bam_using_freebayes.pyPK9NN >ccal/get_variants_from_bam_using_freebayes_and_multiprocess.pyPK4*N ؒa+ccal/get_variants_from_bam_using_strelka.pyPK9NN\$6 4ccal/get_variants_from_vcf_gz.pyPK4*N6"rccal/get_vcf_info.pyPK4*N~lغ`:ccal/get_vcf_info_ann.pyPK4*NK PY*ccal/get_vcf_sample_format.pyPK4*Nccal/get_volume_name.pyPK9NN]:wccal/group_and_apply_function_on_each_group_in_iterable.pyPK4*N`6hccal/group_iterable.pyPK.?N# lccal/gsea.pyPK4*NL"Lccal/gzip_compress_file.pyPK4*N,<4:/Eccal/gzip_decompress_and_bgzip_compress_file.pyPK4*N΅hccal/gzip_decompress_file.pyPK4*N!lccal/have_program.pyPK9NNB/ &7ccal/hierarchical_consensus_cluster.pyPK4*N@a .5ccal/hierarchical_consensus_cluster_with_ks.pyPK4*Nf7DBccal/in_git_repository.pyPK4*NHf&"ccal/index_bam_using_samtools_index.pyPK4*N&}zAccal/index_gff3_df_by_name.pyPK4*N0a Bccal/infer.pyPK4*NVA #N ccal/infer_assuming_independence.pyPK4*N/ AL ccal/initialize_logger.pyPK4*NU *_"ccal/install_and_activate_conda.pyPK4*N  ccal/install_python_libraries.pyPK4*Ns@Fccal/is_inframe.pyPK4*NŀGccal/is_valid_vcf_gz.pyPK4*NX+kccal/load_gps_map.pyPK4*N,xccal/log_and_return_response.pyPK4*N\x1Nccal/log_nd_array.pyPK4*N~}ccal/make_categorical_colors.pyPK4*N4ccal/make_colorscale.pyPK4*N(D6j#ccal/make_colorscale_from_colors.pyPK9NN`e"Uccal/make_comparison_panel.pyPKBN@_xyccal/make_context_matrix.pyPK4*Naa p'*ccal/make_coordinates_for_reflection.pyPK4*N7ti|4ccal/make_file_name_from_str.pyPK9NN=>&<ccal/make_maf_from_vcf.pyPK9NN^@e #ccal/make_match_panel.pyPK%-N+3hX. +ccal/make_match_panels.pyPK4*N# Sj2-ccal/make_membership_df_from_categorical_series.pyPK4*N+.ccal/make_mesh_grid_coordinates_per_axis.pyPK9NN՛g0ccal/make_object_int_mapping.pyPK4*N0ccal/make_random_color.pyPK4*NV+p1ccal/make_reference_genome.pyPK9NN & 3ccal/make_summary_match_panel.pyPK4*Npa9ccal/make_volume_dict.pyPK!1N/(p;:ccal/map_cell_line_names.pyPK4*Nh$ 1 :J<ccal/mark_duplicates_in_bam_using_picard_markduplicates.pyPK4*Nd{ >ccal/mds.pyPK4*NSez!n@ccal/merge_dicts_with_callable.pyPK9NN~&:>#tAccal/mf_by_multiplicative_update.pyPK9NNK ZBccal/mf_consensus_cluster.pyPKCN9Uճ\f$4Gccal/mf_consensus_cluster_with_ks.pyPK4*N+mZgKccal/mount_volume.pyPK4*N%Lccal/multiprocess.pyPK4*N0 Mccal/nd_array_is_sorted.pyPK9NN<0TNccal/nmf_by_multiple_V_and_H.pyPK4*N+ZPccal/nmf_by_sklearn.pyPK4*N\bzxQccal/normalize_contig.pyPK4*NA.ERccal/normalize_df.pyPK4*NSccal/normalize_nd_array.pyPK4*NjU+Sccal/parse_vcf_row_and_make_variant_dict.pyPK4*NOqSVccal/plot_and_save.pyPK4*NxZ9g oWccal/plot_bar.pyPK4*N`1t [ccal/plot_bayesian_nomogram.pyPK4*N~(q^ccal/plot_bubble_map.pyPK4*N-?5accal/plot_color_text.pyPK4'INAcccal/plot_context.pyPK4*Nhiccal/plot_distributions.pyPK4*N}ڪ lccal/plot_heat_map.pyPK4*Nm7tsccal/plot_pie.pyPK4*N@Dxccal/plot_points.pyPK4*N>M]&zccal/plot_table.pyPK4*N/P@}ccal/plot_violin_or_box.pyPKCN :ccal/process_feature_x_sample.pyPK%-N;P+ccal/read_copynumber_gistic2.pyPKA%-N~{ ,yccal/read_correlate_copynumber_vs_mrnaseq.pyPK%-Nf͆ccal/read_gct.pyPK$-Neccal/read_gff3_gz.pyPKMN ccal/read_gmt.pyPKSMNs6< ccal/read_gmts.pyPK4*NiUWccal/read_json.pyPK$-N$KYchccal/read_matrix_market.pyPKu2N"2"ccal/read_mutsignozzlereport2cv.pyPK9NNwO! %kccal/read_vcf_gz_and_make_vcf_dict.pyPK4*N׍ 'ccal/read_where_and_map_column_names.pyPK4*Nw vF]bccal/reboot_machine.pyPK4*N=9ܔccal/remove_path.pyPK4*NU|Jrccal/remove_paths.pyPK4*Nx!;ccal/rename_chromosome_of_vcf_gz_using_bcftools_annotate.pyPK4*NdTa+%'<ccal/replace_bad_objects_in_iterable.pyPK4*N 3#ccal/rescale_x_y_coordiantes_in_polar_coordiante.pyPK4*N=i'>ccal/reverse_complement_dna_sequence.pyPK4*Np3I^'ccal/reverse_transcribe_rna_sequence.pyPK4*Nsccal/run_command.pyPK4*N?;Vccal/run_command_and_monitor.pyPK#>NBs(ccal/sample_series_randomly_per_value.pyPKQ#-NWKOp ccal/select_gene_symbol.pyPK5NNT!ccal/select_series_indices.pyPK