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dirichlet_rng.hpp
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1 #ifndef STAN_MATH_PRIM_MAT_PROB_DIRICHLET_RNG_HPP
2 #define STAN_MATH_PRIM_MAT_PROB_DIRICHLET_RNG_HPP
3
4 #include <boost/math/special_functions/gamma.hpp>
5 #include <boost/random/gamma_distribution.hpp>
6 #include <boost/random/uniform_real_distribution.hpp>
7 #include <boost/random/variate_generator.hpp>
8
9 #include <stan/math/prim/scal/err/check_consistent_sizes.hpp>
10 #include <stan/math/prim/scal/err/check_positive.hpp>
11 #include <stan/math/prim/mat/err/check_simplex.hpp>
12 #include <stan/math/prim/scal/fun/constants.hpp>
13 #include <stan/math/prim/mat/fun/log_sum_exp.hpp>
14 #include <stan/math/prim/scal/fun/multiply_log.hpp>
15 #include <stan/math/prim/scal/meta/include_summand.hpp>
16
17 #include <cmath>
18
19 namespace stan {
20 namespace math {
21
43 template <class RNG>
44 inline Eigen::VectorXd
45 dirichlet_rng(const Eigen::Matrix<double, Eigen::Dynamic, 1>& alpha,
46 RNG& rng) {
47 using boost::variate_generator;
48 using boost::gamma_distribution;
49 using boost::random::uniform_real_distribution;
50 using Eigen::VectorXd;
51 using std::exp;
52 using std::log;
53
54 // separate algorithm if any parameter is less than 1
55 if (alpha.minCoeff() < 1) {
56 variate_generator<RNG&, uniform_real_distribution<> >
57 uniform_rng(rng, uniform_real_distribution<>(0.0, 1.0));
58 VectorXd log_y(alpha.size());
59 for (int i = 0; i < alpha.size(); ++i) {
60 variate_generator<RNG&, gamma_distribution<> >
61 gamma_rng(rng, gamma_distribution<>(alpha(i) + 1, 1));
62 double log_u = log(uniform_rng());
63 log_y(i) = log(gamma_rng()) + log_u / alpha(i);
64 }
65 double log_sum_y = log_sum_exp(log_y);
66 VectorXd theta(alpha.size());
67 for (int i = 0; i < alpha.size(); ++i)
68 theta(i) = exp(log_y(i) - log_sum_y);
69 return theta;
70 }
71
72 // standard normalized gamma algorithm
73 Eigen::VectorXd y(alpha.rows());
74 for (int i = 0; i < alpha.rows(); i++) {
75 variate_generator<RNG&, gamma_distribution<> >
76 gamma_rng(rng, gamma_distribution<>(alpha(i, 0), 1e-7));
77 y(i) = gamma_rng();
78 }
79 return y / y.sum();
80 }
81
82 }
83 }
84 #endif
check_simplex.hpp
stan::math::gamma_rng
double gamma_rng(const double alpha, const double beta, RNG &rng)
Definition: gamma_rng.hpp:29
check_positive.hpp
stan
Definition: log_sum_exp.hpp:8
stan::math::log
fvar< T > log(const fvar< T > &x)
Definition: log.hpp:14
stan::math::log_sum_exp
fvar< T > log_sum_exp(const std::vector< fvar< T > > &v)
Definition: log_sum_exp.hpp:13
include_summand.hpp
multiply_log.hpp
stan::math::dirichlet_rng
Eigen::VectorXd dirichlet_rng(const Eigen::Matrix< double, Eigen::Dynamic, 1 > &alpha, RNG &rng)
Return a draw from a Dirichlet distribution with specified parameters and pseudo-random number genera...
Definition: dirichlet_rng.hpp:45
stan::math::exp
fvar< T > exp(const fvar< T > &x)
Definition: exp.hpp:10
stan::math::uniform_rng
double uniform_rng(const double alpha, const double beta, RNG &rng)
Definition: uniform_rng.hpp:20
stan::math::e
double e()
Return the base of the natural logarithm.
Definition: constants.hpp:94
constants.hpp
log_sum_exp.hpp
check_consistent_sizes.hpp

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