created subdirectory /home/bjorn/Desktop/python_packages/ypkpathway/ypkpathway/pth6

saving files sequence files and images..

saving: FBA1.gb
saving: PDC1.gb
saving: PGI.gb
saving: ScTAL1.gb
saving: ScXKS1.gb
saving: SsXYL1.gb
saving: SsXYL2.gb
saving: TDH3.gb
saving: TEF1.gb
saving: pYPK_A.png
saving: pYPK_ZE.png
saving: pYPKa.gb
saving: pYPKpw.gb
saving: primers.fasta
saving: pw.png
saving: tp_g_tp.png

saving notebook files ..

saving: pYPK0_FBA1_ScTAL1_PDC1.ipynb
saving: pYPK0_PGI_ScXKS1_FBA1.ipynb
saving: pYPK0_TDH3_SsXYL2_PGI.ipynb
saving: pYPK0_TEF1_SsXYL1_TDH3.ipynb
saving: pYPKa_ZE_FBA1.ipynb
saving: pYPKa_ZE_PDC1.ipynb
saving: pYPKa_ZE_PGI.ipynb
saving: pYPKa_ZE_TDH3.ipynb
saving: pYPKa_ZE_TEF1.ipynb

executing pYPKa notebooks..

executing: pYPKa_ZE_FBA1.ipynb
executing: pYPKa_ZE_PDC1.ipynb
executing: pYPKa_ZE_PGI.ipynb
executing: pYPKa_ZE_TDH3.ipynb
executing: pYPKa_ZE_TEF1.ipynb

executing pYPK0 notebooks..

executing: pYPK0_FBA1_ScTAL1_PDC1.ipynb
executing: pYPK0_PGI_ScXKS1_FBA1.ipynb
executing: pYPK0_TDH3_SsXYL2_PGI.ipynb
executing: pYPK0_TEF1_SsXYL1_TDH3.ipynb

executing final pathway notebook..

executing: pw.ipynb