MANIFEST.in
setup.py
bin/panama
panama/__init__.py
panama.egg-info/PKG-INFO
panama.egg-info/SOURCES.txt
panama.egg-info/dependency_links.txt
panama.egg-info/requires.txt
panama.egg-info/top_level.txt
panama/core/lmm/c_lmm.cpp
panama/core/lmm/lmm.cpp
panama/core/lmm/utils/Beta.cpp
panama/core/lmm/utils/BrentC.cpp
panama/core/lmm/utils/FisherF.cpp
panama/core/lmm/utils/Gamma.cpp
panama/core/lmm/utils/MathFunctions.cpp
panama/core/__init__.py
panama/core/confounders.py
panama/core/qvalue.py
panama/core/testing.py
panama/core/testing_core.py
panama/core/lmm/__init__.py
panama/core/lmm/c_lmm.cpp
panama/core/lmm/lmm.cpp
panama/core/lmm/lmm.h
panama/core/lmm/lmm.pyx
panama/core/lmm/lmm_fast.py
panama/core/lmm/lmm_fast_old.py
panama/core/lmm/lmm_slow.py
panama/core/lmm/setup.py
panama/core/lmm/test_lmm.py
panama/core/lmm/Eigen/Array
panama/core/lmm/Eigen/CMakeLists.txt
panama/core/lmm/Eigen/Cholesky
panama/core/lmm/Eigen/CholmodSupport
panama/core/lmm/Eigen/Core
panama/core/lmm/Eigen/Dense
panama/core/lmm/Eigen/Eigen
panama/core/lmm/Eigen/Eigen2Support
panama/core/lmm/Eigen/Eigenvalues
panama/core/lmm/Eigen/Geometry
panama/core/lmm/Eigen/Householder
panama/core/lmm/Eigen/IterativeLinearSolvers
panama/core/lmm/Eigen/Jacobi
panama/core/lmm/Eigen/LU
panama/core/lmm/Eigen/LeastSquares
panama/core/lmm/Eigen/OrderingMethods
panama/core/lmm/Eigen/PARDISOSupport
panama/core/lmm/Eigen/QR
panama/core/lmm/Eigen/QtAlignedMalloc
panama/core/lmm/Eigen/SVD
panama/core/lmm/Eigen/Sparse
panama/core/lmm/Eigen/SparseCholesky
panama/core/lmm/Eigen/SparseCore
panama/core/lmm/Eigen/StdDeque
panama/core/lmm/Eigen/StdList
panama/core/lmm/Eigen/StdVector
panama/core/lmm/Eigen/SuperLUSupport
panama/core/lmm/Eigen/UmfPackSupport
panama/core/lmm/Eigen/src/CMakeLists.txt
panama/core/lmm/Eigen/src/Cholesky/CMakeLists.txt
panama/core/lmm/Eigen/src/Cholesky/LDLT.h
panama/core/lmm/Eigen/src/Cholesky/LLT.h
panama/core/lmm/Eigen/src/Cholesky/LLT_MKL.h
panama/core/lmm/Eigen/src/CholmodSupport/CMakeLists.txt
panama/core/lmm/Eigen/src/CholmodSupport/CholmodSupport.h
panama/core/lmm/Eigen/src/Core/Array.h
panama/core/lmm/Eigen/src/Core/ArrayBase.h
panama/core/lmm/Eigen/src/Core/ArrayWrapper.h
panama/core/lmm/Eigen/src/Core/Assign.h
panama/core/lmm/Eigen/src/Core/Assign_MKL.h
panama/core/lmm/Eigen/src/Core/BandMatrix.h
panama/core/lmm/Eigen/src/Core/Block.h
panama/core/lmm/Eigen/src/Core/BooleanRedux.h
panama/core/lmm/Eigen/src/Core/CMakeLists.txt
panama/core/lmm/Eigen/src/Core/CommaInitializer.h
panama/core/lmm/Eigen/src/Core/CwiseBinaryOp.h
panama/core/lmm/Eigen/src/Core/CwiseNullaryOp.h
panama/core/lmm/Eigen/src/Core/CwiseUnaryOp.h
panama/core/lmm/Eigen/src/Core/CwiseUnaryView.h
panama/core/lmm/Eigen/src/Core/DenseBase.h
panama/core/lmm/Eigen/src/Core/DenseCoeffsBase.h
panama/core/lmm/Eigen/src/Core/DenseStorage.h
panama/core/lmm/Eigen/src/Core/Diagonal.h
panama/core/lmm/Eigen/src/Core/DiagonalMatrix.h
panama/core/lmm/Eigen/src/Core/DiagonalProduct.h
panama/core/lmm/Eigen/src/Core/Dot.h
panama/core/lmm/Eigen/src/Core/EigenBase.h
panama/core/lmm/Eigen/src/Core/Flagged.h
panama/core/lmm/Eigen/src/Core/ForceAlignedAccess.h
panama/core/lmm/Eigen/src/Core/Functors.h
panama/core/lmm/Eigen/src/Core/Fuzzy.h
panama/core/lmm/Eigen/src/Core/GeneralProduct.h
panama/core/lmm/Eigen/src/Core/GenericPacketMath.h
panama/core/lmm/Eigen/src/Core/GlobalFunctions.h
panama/core/lmm/Eigen/src/Core/IO.h
panama/core/lmm/Eigen/src/Core/Map.h
panama/core/lmm/Eigen/src/Core/MapBase.h
panama/core/lmm/Eigen/src/Core/MathFunctions.h
panama/core/lmm/Eigen/src/Core/Matrix.h
panama/core/lmm/Eigen/src/Core/MatrixBase.h
panama/core/lmm/Eigen/src/Core/NestByValue.h
panama/core/lmm/Eigen/src/Core/NoAlias.h
panama/core/lmm/Eigen/src/Core/NumTraits.h
panama/core/lmm/Eigen/src/Core/PermutationMatrix.h
panama/core/lmm/Eigen/src/Core/PlainObjectBase.h
panama/core/lmm/Eigen/src/Core/Product.h
panama/core/lmm/Eigen/src/Core/ProductBase.h
panama/core/lmm/Eigen/src/Core/Random.h
panama/core/lmm/Eigen/src/Core/Redux.h
panama/core/lmm/Eigen/src/Core/Replicate.h
panama/core/lmm/Eigen/src/Core/ReturnByValue.h
panama/core/lmm/Eigen/src/Core/Reverse.h
panama/core/lmm/Eigen/src/Core/Select.h
panama/core/lmm/Eigen/src/Core/SelfAdjointView.h
panama/core/lmm/Eigen/src/Core/SelfCwiseBinaryOp.h
panama/core/lmm/Eigen/src/Core/SolveTriangular.h
panama/core/lmm/Eigen/src/Core/StableNorm.h
panama/core/lmm/Eigen/src/Core/Stride.h
panama/core/lmm/Eigen/src/Core/Swap.h
panama/core/lmm/Eigen/src/Core/Transpose.h
panama/core/lmm/Eigen/src/Core/Transpositions.h
panama/core/lmm/Eigen/src/Core/TriangularMatrix.h
panama/core/lmm/Eigen/src/Core/VectorBlock.h
panama/core/lmm/Eigen/src/Core/VectorwiseOp.h
panama/core/lmm/Eigen/src/Core/Visitor.h
panama/core/lmm/Eigen/src/Core/arch/CMakeLists.txt
panama/core/lmm/Eigen/src/Core/arch/AltiVec/CMakeLists.txt
panama/core/lmm/Eigen/src/Core/arch/AltiVec/Complex.h
panama/core/lmm/Eigen/src/Core/arch/AltiVec/PacketMath.h
panama/core/lmm/Eigen/src/Core/arch/Default/CMakeLists.txt
panama/core/lmm/Eigen/src/Core/arch/Default/Settings.h
panama/core/lmm/Eigen/src/Core/arch/NEON/CMakeLists.txt
panama/core/lmm/Eigen/src/Core/arch/NEON/Complex.h
panama/core/lmm/Eigen/src/Core/arch/NEON/PacketMath.h
panama/core/lmm/Eigen/src/Core/arch/SSE/CMakeLists.txt
panama/core/lmm/Eigen/src/Core/arch/SSE/Complex.h
panama/core/lmm/Eigen/src/Core/arch/SSE/MathFunctions.h
panama/core/lmm/Eigen/src/Core/arch/SSE/PacketMath.h
panama/core/lmm/Eigen/src/Core/products/CMakeLists.txt
panama/core/lmm/Eigen/src/Core/products/CoeffBasedProduct.h
panama/core/lmm/Eigen/src/Core/products/GeneralBlockPanelKernel.h
panama/core/lmm/Eigen/src/Core/products/GeneralMatrixMatrix.h
panama/core/lmm/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
panama/core/lmm/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_MKL.h
panama/core/lmm/Eigen/src/Core/products/GeneralMatrixMatrix_MKL.h
panama/core/lmm/Eigen/src/Core/products/GeneralMatrixVector.h
panama/core/lmm/Eigen/src/Core/products/GeneralMatrixVector_MKL.h
panama/core/lmm/Eigen/src/Core/products/Parallelizer.h
panama/core/lmm/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
panama/core/lmm/Eigen/src/Core/products/SelfadjointMatrixMatrix_MKL.h
panama/core/lmm/Eigen/src/Core/products/SelfadjointMatrixVector.h
panama/core/lmm/Eigen/src/Core/products/SelfadjointMatrixVector_MKL.h
panama/core/lmm/Eigen/src/Core/products/SelfadjointProduct.h
panama/core/lmm/Eigen/src/Core/products/SelfadjointRank2Update.h
panama/core/lmm/Eigen/src/Core/products/TriangularMatrixMatrix.h
panama/core/lmm/Eigen/src/Core/products/TriangularMatrixMatrix_MKL.h
panama/core/lmm/Eigen/src/Core/products/TriangularMatrixVector.h
panama/core/lmm/Eigen/src/Core/products/TriangularMatrixVector_MKL.h
panama/core/lmm/Eigen/src/Core/products/TriangularSolverMatrix.h
panama/core/lmm/Eigen/src/Core/products/TriangularSolverMatrix_MKL.h
panama/core/lmm/Eigen/src/Core/products/TriangularSolverVector.h
panama/core/lmm/Eigen/src/Core/util/BlasUtil.h
panama/core/lmm/Eigen/src/Core/util/CMakeLists.txt
panama/core/lmm/Eigen/src/Core/util/Constants.h
panama/core/lmm/Eigen/src/Core/util/DisableStupidWarnings.h
panama/core/lmm/Eigen/src/Core/util/ForwardDeclarations.h
panama/core/lmm/Eigen/src/Core/util/MKL_support.h
panama/core/lmm/Eigen/src/Core/util/Macros.h
panama/core/lmm/Eigen/src/Core/util/Memory.h
panama/core/lmm/Eigen/src/Core/util/Meta.h
panama/core/lmm/Eigen/src/Core/util/ReenableStupidWarnings.h
panama/core/lmm/Eigen/src/Core/util/StaticAssert.h
panama/core/lmm/Eigen/src/Core/util/XprHelper.h
panama/core/lmm/Eigen/src/Eigen2Support/Block.h
panama/core/lmm/Eigen/src/Eigen2Support/CMakeLists.txt
panama/core/lmm/Eigen/src/Eigen2Support/Cwise.h
panama/core/lmm/Eigen/src/Eigen2Support/CwiseOperators.h
panama/core/lmm/Eigen/src/Eigen2Support/LU.h
panama/core/lmm/Eigen/src/Eigen2Support/Lazy.h
panama/core/lmm/Eigen/src/Eigen2Support/LeastSquares.h
panama/core/lmm/Eigen/src/Eigen2Support/Macros.h
panama/core/lmm/Eigen/src/Eigen2Support/MathFunctions.h
panama/core/lmm/Eigen/src/Eigen2Support/Memory.h
panama/core/lmm/Eigen/src/Eigen2Support/Meta.h
panama/core/lmm/Eigen/src/Eigen2Support/Minor.h
panama/core/lmm/Eigen/src/Eigen2Support/QR.h
panama/core/lmm/Eigen/src/Eigen2Support/SVD.h
panama/core/lmm/Eigen/src/Eigen2Support/TriangularSolver.h
panama/core/lmm/Eigen/src/Eigen2Support/VectorBlock.h
panama/core/lmm/Eigen/src/Eigen2Support/Geometry/AlignedBox.h
panama/core/lmm/Eigen/src/Eigen2Support/Geometry/All.h
panama/core/lmm/Eigen/src/Eigen2Support/Geometry/AngleAxis.h
panama/core/lmm/Eigen/src/Eigen2Support/Geometry/CMakeLists.txt
panama/core/lmm/Eigen/src/Eigen2Support/Geometry/Hyperplane.h
panama/core/lmm/Eigen/src/Eigen2Support/Geometry/ParametrizedLine.h
panama/core/lmm/Eigen/src/Eigen2Support/Geometry/Quaternion.h
panama/core/lmm/Eigen/src/Eigen2Support/Geometry/Rotation2D.h
panama/core/lmm/Eigen/src/Eigen2Support/Geometry/RotationBase.h
panama/core/lmm/Eigen/src/Eigen2Support/Geometry/Scaling.h
panama/core/lmm/Eigen/src/Eigen2Support/Geometry/Transform.h
panama/core/lmm/Eigen/src/Eigen2Support/Geometry/Translation.h
panama/core/lmm/Eigen/src/Eigenvalues/CMakeLists.txt
panama/core/lmm/Eigen/src/Eigenvalues/ComplexEigenSolver.h
panama/core/lmm/Eigen/src/Eigenvalues/ComplexSchur.h
panama/core/lmm/Eigen/src/Eigenvalues/ComplexSchur_MKL.h
panama/core/lmm/Eigen/src/Eigenvalues/EigenSolver.h
panama/core/lmm/Eigen/src/Eigenvalues/EigenvaluesCommon.h
panama/core/lmm/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
panama/core/lmm/Eigen/src/Eigenvalues/HessenbergDecomposition.h
panama/core/lmm/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
panama/core/lmm/Eigen/src/Eigenvalues/RealSchur.h
panama/core/lmm/Eigen/src/Eigenvalues/RealSchur_MKL.h
panama/core/lmm/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
panama/core/lmm/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_MKL.h
panama/core/lmm/Eigen/src/Eigenvalues/Tridiagonalization.h
panama/core/lmm/Eigen/src/Geometry/AlignedBox.h
panama/core/lmm/Eigen/src/Geometry/AngleAxis.h
panama/core/lmm/Eigen/src/Geometry/CMakeLists.txt
panama/core/lmm/Eigen/src/Geometry/EulerAngles.h
panama/core/lmm/Eigen/src/Geometry/Homogeneous.h
panama/core/lmm/Eigen/src/Geometry/Hyperplane.h
panama/core/lmm/Eigen/src/Geometry/OrthoMethods.h
panama/core/lmm/Eigen/src/Geometry/ParametrizedLine.h
panama/core/lmm/Eigen/src/Geometry/Quaternion.h
panama/core/lmm/Eigen/src/Geometry/Rotation2D.h
panama/core/lmm/Eigen/src/Geometry/RotationBase.h
panama/core/lmm/Eigen/src/Geometry/Scaling.h
panama/core/lmm/Eigen/src/Geometry/Transform.h
panama/core/lmm/Eigen/src/Geometry/Translation.h
panama/core/lmm/Eigen/src/Geometry/Umeyama.h
panama/core/lmm/Eigen/src/Geometry/arch/CMakeLists.txt
panama/core/lmm/Eigen/src/Geometry/arch/Geometry_SSE.h
panama/core/lmm/Eigen/src/Householder/BlockHouseholder.h
panama/core/lmm/Eigen/src/Householder/CMakeLists.txt
panama/core/lmm/Eigen/src/Householder/Householder.h
panama/core/lmm/Eigen/src/Householder/HouseholderSequence.h
panama/core/lmm/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
panama/core/lmm/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
panama/core/lmm/Eigen/src/IterativeLinearSolvers/CMakeLists.txt
panama/core/lmm/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
panama/core/lmm/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
panama/core/lmm/Eigen/src/Jacobi/CMakeLists.txt
panama/core/lmm/Eigen/src/Jacobi/Jacobi.h
panama/core/lmm/Eigen/src/LU/CMakeLists.txt
panama/core/lmm/Eigen/src/LU/Determinant.h
panama/core/lmm/Eigen/src/LU/FullPivLU.h
panama/core/lmm/Eigen/src/LU/Inverse.h
panama/core/lmm/Eigen/src/LU/PartialPivLU.h
panama/core/lmm/Eigen/src/LU/PartialPivLU_MKL.h
panama/core/lmm/Eigen/src/LU/arch/CMakeLists.txt
panama/core/lmm/Eigen/src/LU/arch/Inverse_SSE.h
panama/core/lmm/Eigen/src/OrderingMethods/Amd.h
panama/core/lmm/Eigen/src/OrderingMethods/CMakeLists.txt
panama/core/lmm/Eigen/src/PARDISOSupport/CMakeLists.txt
panama/core/lmm/Eigen/src/PARDISOSupport/PARDISOSupport.h
panama/core/lmm/Eigen/src/QR/CMakeLists.txt
panama/core/lmm/Eigen/src/QR/ColPivHouseholderQR.h
panama/core/lmm/Eigen/src/QR/ColPivHouseholderQR_MKL.h
panama/core/lmm/Eigen/src/QR/FullPivHouseholderQR.h
panama/core/lmm/Eigen/src/QR/HouseholderQR.h
panama/core/lmm/Eigen/src/QR/HouseholderQR_MKL.h
panama/core/lmm/Eigen/src/SVD/CMakeLists.txt
panama/core/lmm/Eigen/src/SVD/JacobiSVD.h
panama/core/lmm/Eigen/src/SVD/JacobiSVD_MKL.h
panama/core/lmm/Eigen/src/SVD/UpperBidiagonalization.h
panama/core/lmm/Eigen/src/SparseCholesky/CMakeLists.txt
panama/core/lmm/Eigen/src/SparseCholesky/SimplicialCholesky.h
panama/core/lmm/Eigen/src/SparseCore/AmbiVector.h
panama/core/lmm/Eigen/src/SparseCore/CMakeLists.txt
panama/core/lmm/Eigen/src/SparseCore/CompressedStorage.h
panama/core/lmm/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
panama/core/lmm/Eigen/src/SparseCore/CoreIterators.h
panama/core/lmm/Eigen/src/SparseCore/MappedSparseMatrix.h
panama/core/lmm/Eigen/src/SparseCore/SparseAssign.h
panama/core/lmm/Eigen/src/SparseCore/SparseBlock.h
panama/core/lmm/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
panama/core/lmm/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
panama/core/lmm/Eigen/src/SparseCore/SparseDenseProduct.h
panama/core/lmm/Eigen/src/SparseCore/SparseDiagonalProduct.h
panama/core/lmm/Eigen/src/SparseCore/SparseDot.h
panama/core/lmm/Eigen/src/SparseCore/SparseFuzzy.h
panama/core/lmm/Eigen/src/SparseCore/SparseMatrix.h
panama/core/lmm/Eigen/src/SparseCore/SparseMatrixBase.h
panama/core/lmm/Eigen/src/SparseCore/SparseProduct.h
panama/core/lmm/Eigen/src/SparseCore/SparseRedux.h
panama/core/lmm/Eigen/src/SparseCore/SparseSelfAdjointView.h
panama/core/lmm/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
panama/core/lmm/Eigen/src/SparseCore/SparseTranspose.h
panama/core/lmm/Eigen/src/SparseCore/SparseTriangularView.h
panama/core/lmm/Eigen/src/SparseCore/SparseUtil.h
panama/core/lmm/Eigen/src/SparseCore/SparseVector.h
panama/core/lmm/Eigen/src/SparseCore/SparseView.h
panama/core/lmm/Eigen/src/SparseCore/TriangularSolver.h
panama/core/lmm/Eigen/src/StlSupport/CMakeLists.txt
panama/core/lmm/Eigen/src/StlSupport/StdDeque.h
panama/core/lmm/Eigen/src/StlSupport/StdList.h
panama/core/lmm/Eigen/src/StlSupport/StdVector.h
panama/core/lmm/Eigen/src/StlSupport/details.h
panama/core/lmm/Eigen/src/SuperLUSupport/CMakeLists.txt
panama/core/lmm/Eigen/src/SuperLUSupport/SuperLUSupport.h
panama/core/lmm/Eigen/src/UmfPackSupport/CMakeLists.txt
panama/core/lmm/Eigen/src/UmfPackSupport/UmfPackSupport.h
panama/core/lmm/Eigen/src/misc/CMakeLists.txt
panama/core/lmm/Eigen/src/misc/Image.h
panama/core/lmm/Eigen/src/misc/Kernel.h
panama/core/lmm/Eigen/src/misc/Solve.h
panama/core/lmm/Eigen/src/misc/SparseSolve.h
panama/core/lmm/Eigen/src/misc/blas.h
panama/core/lmm/Eigen/src/plugins/ArrayCwiseBinaryOps.h
panama/core/lmm/Eigen/src/plugins/ArrayCwiseUnaryOps.h
panama/core/lmm/Eigen/src/plugins/BlockMethods.h
panama/core/lmm/Eigen/src/plugins/CMakeLists.txt
panama/core/lmm/Eigen/src/plugins/CommonCwiseBinaryOps.h
panama/core/lmm/Eigen/src/plugins/CommonCwiseUnaryOps.h
panama/core/lmm/Eigen/src/plugins/MatrixCwiseBinaryOps.h
panama/core/lmm/Eigen/src/plugins/MatrixCwiseUnaryOps.h
panama/core/lmm/utils/Beta.cpp
panama/core/lmm/utils/Beta.h
panama/core/lmm/utils/BrentC.cpp
panama/core/lmm/utils/BrentC.h
panama/core/lmm/utils/FisherF.cpp
panama/core/lmm/utils/FisherF.h
panama/core/lmm/utils/Gamma.cpp
panama/core/lmm/utils/Gamma.h
panama/core/lmm/utils/MathFunctions.cpp
panama/core/lmm/utils/MathFunctions.h
panama/data/sim_cov.csv
panama/data/sim_expr.csv
panama/data/sim_snps.csv
panama/data/test.py