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# interfaces.slicer.quantification.petstandarduptakevaluecomputation

## PETStandardUptakeValueComputation

Link to code

Wraps command **PETStandardUptakeValueComputation **

title: PET Standard Uptake Value Computation

category: Quantification

description: Computes the standardized uptake value based on body weight. Takes an input PET image in DICOM and NRRD format (DICOM header must contain Radiopharmaceutical parameters). Produces a CSV file that contains patientID, studyDate, dose, labelID, suvmin, suvmax, suvmean, labelName for each volume of interest. It also displays some of the information as output strings in the GUI, the CSV file is optional in that case. The CSV file is appended to on each execution of the CLI.

version: 0.1.0.$Revision: 8595 $(alpha)

documentation-url: http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/ComputeSUVBodyWeight

contributor: Wendy Plesniak (SPL, BWH), Nicole Aucoin (SPL, BWH), Ron Kikinis (SPL, BWH)

acknowledgements: This work is funded by the Harvard Catalyst, and the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.

Inputs:

    [Mandatory]
    terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
            Control terminal output: `stream` - displays to terminal
            immediately, `allatonce` - waits till command is finished to display
            output, `file` - writes output to file, `none` - output is ignored

    [Optional]
    OutputLabel: (a string)
            List of labels for which SUV values were computed
    OutputLabelValue: (a string)
            List of label values for which SUV values were computed
    SUVMax: (a string)
            SUV max for each label
    SUVMean: (a string)
            SUV mean for each label
    SUVMin: (a string)
            SUV minimum for each label
    args: (a string)
            Additional parameters to the command
    color: (an existing file name)
            Color table to to map labels to colors and names
    csvFile: (a boolean or a file name)
            A file holding the output SUV values in comma separated lines, one
            per label. Optional.
    environ: (a dictionary with keys which are a value of type 'str' and
             with values which are a value of type 'str', nipype default value:
             {})
            Environment variables
    ignore_exception: (a boolean, nipype default value: False)
            Print an error message instead of throwing an exception in case the
            interface fails to run
    labelMap: (an existing file name)
            Input label volume containing the volumes of interest
    petDICOMPath: (an existing directory name)
            Input path to a directory containing a PET volume containing DICOM
            header information for SUV computation
    petVolume: (an existing file name)
            Input PET volume for SUVbw computation (must be the same volume as
            pointed to by the DICOM path!).
    terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
            Control terminal output: `stream` - displays to terminal
            immediately, `allatonce` - waits till command is finished to display
            output, `file` - writes output to file, `none` - output is ignored

Outputs:

    csvFile: (an existing file name)
            A file holding the output SUV values in comma separated lines, one
            per label. Optional.