{ "info": { "author": "Peter Lee, Eduardo Blancas", "author_email": "fkq8@blancas.io", "bugtrack_url": null, "classifiers": [ "License :: OSI Approved :: Apache Software License", "Programming Language :: Python", "Programming Language :: Python :: 2.7", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.3", "Programming Language :: Python :: 3.4", "Programming Language :: Python :: 3.5", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: Implementation :: CPython" ], "description": "\nYASS: Yet Another Spike Sorter\n================================\n\n\n.. image:: https://travis-ci.org/paninski-lab/yass.svg?branch=master\n :target: https://travis-ci.org/paninski-lab/yass.svg?branch=master\n\n\n.. image:: https://readthedocs.org/projects/yass/badge/?version=latest\n :target: http://yass.readthedocs.io/en/latest/?badge=latest\n\n\n.. image:: https://badges.gitter.im/paninski-lab/yass.svg\n :target: https://gitter.im/paninski-lab/yass?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge\n\n\n**Note**: YASS is in an early stage of development. Although it is stable, it has only been tested\nwith the data in our lab, but we are working to make it more flexible. Feel free to send\nfeedback through `Gitter`_. Expect a lot of API changes in the near future.\n\n.. _Gitter: https://gitter.im/paninski-lab/yass\n\nReference\n---------\n\nLee, J. et al. (2017). YASS: Yet another spike sorter. Neural Information Processing Systems. Available in biorxiv: https://www.biorxiv.org/content/early/2017/06/19/151928\n\n\nInstallation\n------------\n\nInstalling the last stable version:\n\n\n.. code-block:: shell\n\n pip install yass-algorithm\n\n\nIf you are feeling adventurous, you can install from the master branch:\n\n\n.. code-block:: shell\n\n pip install git+git://github.com/paninski-lab/yass@master\n\nExample\n-------\n\nQuick example of YASS using a sample of the neuropixel data from `Nick\nSteinmetz`_:\n\n.. _Nick Steinmetz: http://data.cortexlab.net/singlePhase3/\n\n.. code-block:: shell\n\n # install last stable version\n pip install yass-algorithm\n\n # clone repo to get the sample data\n git clone https://github.com/paninski-lab/yass\n\n # move to the examples/ folder and run yass in the sample data\n cd yass/examples\n yass sort config_sample.yaml\n\n # see the spike train\n cat data/spike_train.csv\n\n\nYou can also use YASS in Python scripts. See the documentation for details.\n\n\nDocumentation\n-------------\n\nDocumentation hosted at `https://yass.readthedocs.io`_\n\n\n.. _https://yass.readthedocs.io: https://yass.readthedocs.io\n\nRunning tests\n-------------\n\nTo run tests and flake8 checks (from the root folder):\n\n.. code-block:: shell\n\n pip install -r requirements.txt\n\n make test\n\n\nBuilding documentation\n----------------------\n\nYou need to install graphviz to build the graphs included in the\ndocumentation. 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