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        "description": "|PyPI package| |Documentation| |Test results| |Test coverage| |Code\nanalysis| |License| |Analytics|\n\nWhole-cell modeling utilities\n=============================\n\nThis package contains utilities that are useful to multiple whole-cell\n(WC) software components.\n\nInstallation\n------------\n\n1. Install the third-party dependencies listed below. Detailed\n   installation instructions are available in `An Introduction to\n   Whole-Cell\n   Modeling <http://docs.karrlab.org/intro_to_wc_modeling/master/0.0.1/installation.html>`__.\n\n   -  `ChemAxon Marvin <https://chemaxon.com/products/marvin>`__:\n      optional to calculate major protonation states\n   -  `Java <https://www.java.com>`__ >= 1.8\n   -  `Git <https://git-scm.com/>`__\n   -  `OpenBabel <http://openbabel.org>`__: optional to calculate\n      chemical formulae\n   -  `Pip <https://pip.pypa.io>`__ >= 18.0\n   -  `Python <https://www.python.org>`__ >= 3.6\n\n2. To use Marvin to calculate major protonation states, set\n   ``JAVA_HOME`` to the path to your Java virtual machine (JVM)\n   ``export JAVA_HOME=/usr/lib/jvm/default-java``\n\n3. To use Marvin to calculate major protonation states, add Marvin to\n   the Java class path\n   ``export CLASSPATH=$CLASSPATH:/opt/chemaxon/marvinsuite/lib/MarvinBeans.jar``\n\n4. Install this package\n\n   -  Install the latest release from PyPI ``pip install wc_utils[all]``\n\n   -  Install the latest revision from GitHub\n      ``pip install git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils[all]   pip install git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils[all]``\n\nExample usage\n-------------\n\nDocumentation\n-------------\n\nPlease see the `API documentation <http://docs.karrlab.org/wc_utils>`__.\n\nLicense\n-------\n\nThe build utilities are released under the `MIT license <LICENSE>`__.\n\nDevelopment team\n----------------\n\nThis package was developed by the `Karr Lab <http://www.karrlab.org>`__\nat the Icahn School of Medicine at Mount Sinai in New York, USA.\n\n-  Arthur Goldberg\n-  Jonathan Karr\n\nQuestions and comments\n----------------------\n\nPlease contact the `Karr Lab <http://www.karrlab.org>`__ with any\nquestions or comments.\n\n.. |PyPI package| image:: https://img.shields.io/pypi/v/wc_utils.svg\n   :target: https://pypi.python.org/pypi/wc_utils\n.. |Documentation| image:: https://readthedocs.org/projects/wc-utils/badge/?version=latest\n   :target: http://docs.karrlab.org/wc_utils\n.. |Test results| image:: https://circleci.com/gh/KarrLab/wc_utils.svg?style=shield\n   :target: https://circleci.com/gh/KarrLab/wc_utils\n.. |Test coverage| image:: https://coveralls.io/repos/github/KarrLab/wc_utils/badge.svg\n   :target: https://coveralls.io/github/KarrLab/wc_utils\n.. |Code analysis| image:: https://api.codeclimate.com/v1/badges/8139298cdbc1e32dcde4/maintainability\n   :target: https://codeclimate.com/github/KarrLab/wc_utils\n.. |License| image:: https://img.shields.io/github/license/KarrLab/wc_utils.svg\n   :target: LICENSE\n.. |Analytics| image:: https://ga-beacon.appspot.com/UA-86759801-1/wc_utils/README.md?pixel\n\n\n\n",
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