{ "info": { "author": "Luis Pedro Coelho and others (See AUTHORS.txt file)", "author_email": "luis@luispedro.org", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Intended Audience :: Science/Research", "License :: OSI Approved :: MIT License", "Operating System :: OS Independent", "Operating System :: POSIX", "Programming Language :: Python", "Topic :: Scientific/Engineering" ], "description": "Waldo: Where Proteins Are\n-------------------------\n\nWaldo tells what everyone already knows.\n\nWe have a manuscript in preparation. If you use this in a publication, please\nlet us know so we can (to the best of our knowledge), give you the right\ncitation.\n\nInstallation\n............\n\nDependencies\n~~~~~~~~~~~~\n\n- python\n- lxml\n- sqlalchemy\n- bottle\n\nbottle is only needed if wish to run the web application (i.e., if you only\nusing the local programming API, then you can skip this step).\n\nUnder a debian or Ubuntu system, the following commands will install all needed\npackages::\n\n sudo apt-get install python-lxml\n sudo apt-get install python-sqlalchemy\n sudo apt-get install python-bottle\n\nInstallation\n~~~~~~~~~~~~\n\nYou can run the ``install.sh`` file to get everything working::\n\n ./install.sh\n\nThe individual steps are::\n\n python setup.py install\n\nThis is the standard Python installation command. In order to start using\nwaldo, you need to download all the database files and build the index. The\nutility script ``update-waldo`` should accomplish this::\n\n update-waldo --user\n update-waldo\n update-waldo --datadir /path/to/datadir --database database.sqlite3\n\nThere are three variations (shown above):\n\n1. ``--user`` (the default for ``install.sh``) installs waldo locally for this\n user (under ``$HOME/.local/share/waldo``)\n2. Without an argument, it installs it system-wide (you need to have write\n access to ``/var/lib/waldo``\n3. You can specify exactly where to store the data.\n\nThe ``datadir`` is where waldo will store the downloaded information. It\ndefaults to ``/var/lib/waldo/data``. You can also specify where to store the\ndatabase file (default is ``/var/lib/waldo/waldo.sqlite3``).\n\nAdditionally, you can use the ``--unsafe`` flag to speed up the indexing, but\nif you interrupt the process, the database may be broken::\n\n update-waldo --user --unsafe\n\nRunning the Webapp\n..................\n\nIf you have installed waldo as above, you should execute::\n\n python woof/woof.py\n\nLinks\n.....\n\n- documentation: http://waldo.readthedocs.org/en/latest/\n- github: https://github.com/luispedro/waldo", "description_content_type": null, "docs_url": null, "download_url": "UNKNOWN", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "http://murphylab.web.cmu.edu/services/waldo/home", "keywords": null, "license": "MIT", "maintainer": null, "maintainer_email": null, "name": "waldo", "package_url": "https://pypi.org/project/waldo/", "platform": "Any", "project_url": "https://pypi.org/project/waldo/", "project_urls": { "Download": "UNKNOWN", "Homepage": "http://murphylab.web.cmu.edu/services/waldo/home" }, "release_url": "https://pypi.org/project/waldo/0.1/", "requires_dist": null, "requires_python": null, "summary": "Protein Subcellular Location Information Package", "version": "0.1" }, "last_serial": 770861, "releases": { "0.1": [ { "comment_text": "", "digests": { "md5": "1151a78acd77663843ae0efc9e2b8847", "sha256": "f6c9179ca6ab7038206da472008ef3bdfa80521e79668ae0db0a6d2978949e4b" }, "downloads": -1, "filename": "waldo-0.1.tar.gz", "has_sig": false, "md5_digest": "1151a78acd77663843ae0efc9e2b8847", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 219916, "upload_time": "2013-06-14T11:11:38", "url": "https://files.pythonhosted.org/packages/03/a1/88e10acdc7ca1a9ece2e9606c7ea85bb2c6380a7f7bce5c4e8a278b86f9d/waldo-0.1.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "1151a78acd77663843ae0efc9e2b8847", "sha256": "f6c9179ca6ab7038206da472008ef3bdfa80521e79668ae0db0a6d2978949e4b" }, "downloads": -1, "filename": "waldo-0.1.tar.gz", "has_sig": false, "md5_digest": "1151a78acd77663843ae0efc9e2b8847", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 219916, "upload_time": "2013-06-14T11:11:38", "url": "https://files.pythonhosted.org/packages/03/a1/88e10acdc7ca1a9ece2e9606c7ea85bb2c6380a7f7bce5c4e8a278b86f9d/waldo-0.1.tar.gz" } ] }