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        "author": "Hirak Sarkar",
        "author_email": "hsarkar@umd.edu",
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        "classifiers": [
            "License :: OSI Approved :: MIT License",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 3"
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        "description": "## VCF projection from chromosome to transcriptome\n\nThe program uses ncls, a fast interval tree search program \nthat considerably speeds up the ''stabbing'' problem of \nfinding out the variant that overlaps the transcriptome interval. \n\n```\n\nGTF_FILE = 'Mus_musculus.GRCm38.91.gtf'\nVCF_FILE = 'mgp_v4_indels_NOD_PWK.vcf'\n\n\nfrom vcfproj import vcfproj\nvcf_gtf = vcfproj.projection(GTF_FILE, VCF_FILE)\n\n```\n\n`vcf_gtf` is a dataframe, that would contain the following columns \n```\n[\n\n'chrom_x', - chromosome of variation \n'start', - start of transcript\n'end', - end of transcript\n'gene', - gene name\n'txome', - transcript name\n'vcf_index', - ignore\n'relative_pos', - relative position of variation on transcript\n'transcript_length', - length of transcript\n'chrom_y', - same as chrom_x\n'pos', - position of variation\n'id', - ID\n'ref', - REF\n'alt', - ALT\n'qual', - QUAL\n'filter', - FILTER\n'info', - INFO\n'format', - FORMAT\n'samples' - SAMPLES \n\n]\n```\n\n\n",
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        "name": "vcfproj",
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        "summary": "Project vcf level coordinates from chromosomes to transcript",
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