{ "info": { "author": "Tom Sasani", "author_email": "tom.sasani@utah.edu", "bugtrack_url": null, "classifiers": [ "Development Status :: 3 - Alpha", "License :: OSI Approved :: MIT License", "Programming Language :: Python :: 2.7" ], "description": "# vcfViewer\nA toolkit for visualizing variant call format (VCF) file data.\n\n*Developed by Tom Sasani for MDCRC 6521 at the University of Utah.*\n\n## About\n\n**vcfViewer** is a basic toolkit that allows users to create useful visualizations of VCF metadata in [bokeh](http://bokeh.pydata.org/en/latest/). For example, users can plot quality scores, \n\n\n## Usage\n\nTo visually determine which variants in a VCF meet a quality score threshold, simply run:\n\n`python plot_qual.py [vcf] [threshold]`\n\n## Dependencies\n\n**bokeh** \n\nTo install, run `conda install bokeh`.\n\n**cyvcf2**\n\nTo install, run `pip install cyvcf2`.", "description_content_type": null, "docs_url": null, "download_url": "UNKNOWN", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/tomsasani/vcfViewer", "keywords": null, "license": "MIT", "maintainer": null, "maintainer_email": null, "name": "vcfViewer", "package_url": "https://pypi.org/project/vcfViewer/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/vcfViewer/", "project_urls": { "Download": "UNKNOWN", "Homepage": "https://github.com/tomsasani/vcfViewer" }, "release_url": "https://pypi.org/project/vcfViewer/0.1/", "requires_dist": null, "requires_python": null, "summary": "A toolkit for visualizing VCF metadata.", "version": "0.1" }, "last_serial": 2052234, "releases": { "0.1": [ { "comment_text": "", "digests": { "md5": "dfc0dddb174d74d31889f6825630873f", "sha256": "8293b867a804560ed1af63213d9ee5de1793f2f61eea42fee25781ba28ab8908" }, "downloads": -1, "filename": "vcfViewer-0.1-py3-none-any.whl", "has_sig": false, "md5_digest": "dfc0dddb174d74d31889f6825630873f", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 4496, "upload_time": "2016-04-07T21:13:50", "url": "https://files.pythonhosted.org/packages/0d/00/ed6b2b8ac7054d974d539177d7dfb87c75131ad5cdf53fabddbbaba37f21/vcfViewer-0.1-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "adad5db43dd8ba961e0beb21497f9c83", "sha256": "02ac6fdcb8b4ec7318e29cc3e24ebdf0b20a983d2d0c8f6903adbe1375138620" }, "downloads": -1, "filename": "vcfViewer-0.1.tar.gz", "has_sig": false, "md5_digest": "adad5db43dd8ba961e0beb21497f9c83", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 3841, "upload_time": "2016-04-07T21:13:57", "url": "https://files.pythonhosted.org/packages/d6/dd/c938a1d187b8ec31fd6b07b7af90264df0d61e5a599663b9bffd34383d2a/vcfViewer-0.1.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "dfc0dddb174d74d31889f6825630873f", "sha256": "8293b867a804560ed1af63213d9ee5de1793f2f61eea42fee25781ba28ab8908" }, "downloads": -1, "filename": "vcfViewer-0.1-py3-none-any.whl", "has_sig": false, "md5_digest": "dfc0dddb174d74d31889f6825630873f", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 4496, "upload_time": "2016-04-07T21:13:50", "url": "https://files.pythonhosted.org/packages/0d/00/ed6b2b8ac7054d974d539177d7dfb87c75131ad5cdf53fabddbbaba37f21/vcfViewer-0.1-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "adad5db43dd8ba961e0beb21497f9c83", "sha256": "02ac6fdcb8b4ec7318e29cc3e24ebdf0b20a983d2d0c8f6903adbe1375138620" }, "downloads": -1, "filename": "vcfViewer-0.1.tar.gz", "has_sig": false, "md5_digest": "adad5db43dd8ba961e0beb21497f9c83", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 3841, "upload_time": "2016-04-07T21:13:57", "url": "https://files.pythonhosted.org/packages/d6/dd/c938a1d187b8ec31fd6b07b7af90264df0d61e5a599663b9bffd34383d2a/vcfViewer-0.1.tar.gz" } ] }