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        "author": "Jan Rudolph",
        "author_email": "jan.daniel.rudolph@gmail.com",
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        "description": "uniprot\\_tools\n==============\n\nuniprot provides a command-line and python interface to access the\nuniprot database\n\navailable services: map, retrieve\n\n**map** map a list of ids from one format onto another using uniprots\nmapping api\n\n::\n\n    Args:\n        query: id or list of ids to be mapped\n        f: from ACC | P_ENTREZGENEID | ...\n        t: to ...\n        format: tab by default\n\n    Help:\n        for a list of all possible mappings visit\n        'http://www.uniprot.org/faq/28'\n\n**retrieve** request entries by uniprot acc using batch retrieval\n\n::\n\n    Args:\n        query: list of ids to retrieve\n        format: txt by default\n\n    Help:\n        possible formats:\n        txt, xml, rdf, fasta, gff\n\nInstallation\n------------\n\nFrom pypi (recommended)\n~~~~~~~~~~~~~~~~~~~~~~~\n\n::\n\n    pip install uniprot_tools\n\nFrom source (UNIX) as standalone only\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n\nClone the git repository\n\n::\n\n    git clone https://github.com/jdrudolph/uniprot.git\n\nUse ``distutils`` to install the package\n\n::\n\n    cd uniprot\n    sudo python setup.py install\n\nExample\n-------\n\nstandalone\n~~~~~~~~~~\n\n::\n\n    uniprot map ACC P_ENTREZGENEID acc_file map_file\n\nThis will read UniprotIDs seperated by whitespaces from ``acc_file`` and\nstore them to ``map_file``.\n\n::\n\n    uniprot retrieve acc_file entries.txt\n\nRetrieve textual etries for all uniprot ids in ``acc_file`` and save to\n``entries.txt``\n\nUsing a pipe:\n\n::\n\n    echo P31749 | uniprot map ACC P_ENTREZGENEID\n\nwill print the result to ``stdout`` which can be redirected further\n\n::\n\n    echo P31749 | uniprot retrieve\n\nwill print the result to ``stdout`` which can be redirected further\n\ninside a python script\n~~~~~~~~~~~~~~~~~~~~~~\n\n::\n\n    import uniprot as uni\n    print uni.map('P31749', f='ACC', t='P_ENTREZGENEID') # map single id\n    print uni.map(['P31749','Q16204'], f='ACC', t='P_ENTREZGENEID') # map list of ids\n    print uni.retrieve('P31749')\n    print uni.retrieve(['P31749','Q16204'])",
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