{ "info": { "author": "Luca Cappelletti", "author_email": "cappelletti.luca94@gmail.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 3 - Alpha", "License :: OSI Approved :: MIT License", "Programming Language :: Python :: 3" ], "description": "ucsc_genomes_downloader\n=========================================================================================\n|travis| |sonar_quality| |sonar_maintainability| |codacy| |code_climate_maintainability| |pip| |downloads|\n\nPython package to quickly download genomes from the UCSC.\n\nHow do I install this package?\n----------------------------------------------\nAs usual, just download it using pip:\n\n.. code:: shell\n\n pip install ucsc_genomes_downloader\n\nTests Coverage\n----------------------------------------------\nSince some software handling coverages sometime get slightly different results, here's three of them:\n\n|coveralls| |sonar_coverage| |code_climate_coverage|\n\nUsage example\n---------------------------------------\nSuppose you want to download the genome _hg19:\n\n.. code:: python\n\n from ucsc_genomes_downloader image download_genome\n download_genome(\"hg19\")\n\nThere are a couple options, here's a more complete example:\n\n.. code:: python\n\n from ucsc_genomes_downloader image download_genome\n download_genome(\n genome=\"hg19\",\n path=\".\", # The path where to save the genome, by default the current directory.\n chromosomes=[\"chr19\"], # List of chromosomes to download. By default, all.\n cache_dir=\".genome\", # The path where to store the download cache.\n clear_cache=True # Whetever to delete the download cache, by default True.\n )\n\n.. _hg19: https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.13/\n\n.. |travis| image:: https://travis-ci.org/LucaCappelletti94/ucsc_genomes_downloader.png\n :target: https://travis-ci.org/LucaCappelletti94/ucsc_genomes_downloader\n :alt: Travis CI build\n\n.. |sonar_quality| image:: https://sonarcloud.io/api/project_badges/measure?project=LucaCappelletti94_ucsc_genomes_downloader&metric=alert_status\n :target: https://sonarcloud.io/dashboard/index/LucaCappelletti94_ucsc_genomes_downloader\n :alt: SonarCloud Quality\n\n.. |sonar_maintainability| image:: https://sonarcloud.io/api/project_badges/measure?project=LucaCappelletti94_ucsc_genomes_downloader&metric=sqale_rating\n :target: https://sonarcloud.io/dashboard/index/LucaCappelletti94_ucsc_genomes_downloader\n :alt: SonarCloud Maintainability\n\n.. |sonar_coverage| image:: https://sonarcloud.io/api/project_badges/measure?project=LucaCappelletti94_ucsc_genomes_downloader&metric=coverage\n :target: https://sonarcloud.io/dashboard/index/LucaCappelletti94_ucsc_genomes_downloader\n :alt: SonarCloud Coverage\n\n.. |coveralls| image:: https://coveralls.io/repos/github/LucaCappelletti94/ucsc_genomes_downloader/badge.svg?branch=master\n :target: https://coveralls.io/github/LucaCappelletti94/ucsc_genomes_downloader?branch=master\n :alt: Coveralls Coverage\n\n.. |pip| image:: https://badge.fury.io/py/ucsc_genomes_downloader.svg\n :target: https://badge.fury.io/py/ucsc_genomes_downloader\n :alt: Pypi project\n\n.. |downloads| image:: https://pepy.tech/badge/ucsc_genomes_downloader\n :target: https://pepy.tech/badge/ucsc_genomes_downloader\n :alt: Pypi total project downloads \n\n.. |codacy| image:: https://api.codacy.com/project/badge/Grade/79564bf70059458b8a9ee6e775f4c7d2\n :target: https://www.codacy.com/app/LucaCappelletti94/ucsc_genomes_downloader?utm_source=github.com&utm_medium=referral&utm_content=LucaCappelletti94/ucsc_genomes_downloader&utm_campaign=Badge_Grade\n :alt: Codacy Maintainability\n\n.. |code_climate_maintainability| image:: https://api.codeclimate.com/v1/badges/9cd5ed4d4e41892ccc9d/maintainability\n :target: https://codeclimate.com/github/LucaCappelletti94/ucsc_genomes_downloader/maintainability\n :alt: Maintainability\n\n.. |code_climate_coverage| image:: https://api.codeclimate.com/v1/badges/9cd5ed4d4e41892ccc9d/test_coverage\n :target: https://codeclimate.com/github/LucaCappelletti94/ucsc_genomes_downloader/test_coverage\n :alt: Code Climate Coverate", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/LucaCappelletti94/ucsc_genomes_downloader", "keywords": "", "license": "MIT", "maintainer": "", "maintainer_email": "", "name": "ucsc-genomes-downloader", "package_url": "https://pypi.org/project/ucsc-genomes-downloader/", "platform": "", "project_url": "https://pypi.org/project/ucsc-genomes-downloader/", "project_urls": { "Homepage": "https://github.com/LucaCappelletti94/ucsc_genomes_downloader" }, "release_url": "https://pypi.org/project/ucsc-genomes-downloader/1.0.1/", "requires_dist": null, "requires_python": "", "summary": "Python package to quickly download genomes from the UCSC.", "version": "1.0.1" }, "last_serial": 5349454, "releases": { "1.0.0": [ { "comment_text": "", "digests": { "md5": "e192b9b37f008b4cb0cf2b4603a377c8", "sha256": "cbb65019368018de1eedd5adc13fca52ece6897c2374b3f88b5e79cfa40ac528" }, "downloads": -1, "filename": "ucsc_genomes_downloader-1.0.0.tar.gz", "has_sig": false, "md5_digest": "e192b9b37f008b4cb0cf2b4603a377c8", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 4360, "upload_time": "2019-05-27T08:51:12", "url": "https://files.pythonhosted.org/packages/0c/03/e50a02260980b0abb7da27343866ab2a141a811ea95ed68614294203c6ef/ucsc_genomes_downloader-1.0.0.tar.gz" } ], "1.0.1": [ { "comment_text": "", "digests": { "md5": "054c88a5a59e281cf30dfdd0e706016f", "sha256": "1a32035f695f436c596e0279d2c6fcda60a38bdbdd1eb64f688dfaf0b9ecf030" }, "downloads": -1, "filename": "ucsc_genomes_downloader-1.0.1.tar.gz", "has_sig": false, "md5_digest": "054c88a5a59e281cf30dfdd0e706016f", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 4425, "upload_time": "2019-06-02T17:50:07", "url": "https://files.pythonhosted.org/packages/8a/77/dd2922e71827353bec460861629a69417fe3911d4b69f3f9b6d62ccbd4aa/ucsc_genomes_downloader-1.0.1.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "054c88a5a59e281cf30dfdd0e706016f", "sha256": "1a32035f695f436c596e0279d2c6fcda60a38bdbdd1eb64f688dfaf0b9ecf030" }, "downloads": -1, "filename": "ucsc_genomes_downloader-1.0.1.tar.gz", "has_sig": false, "md5_digest": "054c88a5a59e281cf30dfdd0e706016f", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 4425, "upload_time": "2019-06-02T17:50:07", "url": "https://files.pythonhosted.org/packages/8a/77/dd2922e71827353bec460861629a69417fe3911d4b69f3f9b6d62ccbd4aa/ucsc_genomes_downloader-1.0.1.tar.gz" } ] }