{ "info": { "author": "Natlie Thurlby", "author_email": "natalie.thurlby@bristol.ac.uk", "bugtrack_url": null, "classifiers": [], "description": "# `uberon-py`: a python package for the Uberon ontology\n:construction: :construction: This package is under development (particularly the documentation) :construction: :construction: \n\n## Summary\nI created this package to be able to easily interrogate relationships between Uberon terms in Python. \n\n## Usage\nExample usage:\n```\n# read an ontology in obo format\nobo = uberon-py.Obo('path_to_file/uberon_ext.obo')\n\n# find relationships between terms of interest:\n# (in this case, are any of the source_terms, is_a or part_of the brain?)\nsource_terms = ['UBERON:0003290','UBERON:0003369','UBERON:0003703'] \ntarget_terms = ['UBERON:0000955'] # brain term\nrelations_of_interest = 'is_a','part_of']\nrelations = uberon-py.Relations(source_terms,target_terms,relations_of_interest[,obo.ont).relations\n\n```\n\n\n", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/NatalieThurlby/uberon-py", "keywords": "", "license": "GPLv3", "maintainer": "", "maintainer_email": "", "name": "uberon-py", "package_url": "https://pypi.org/project/uberon-py/", "platform": "", "project_url": "https://pypi.org/project/uberon-py/", "project_urls": { "Homepage": "https://github.com/NatalieThurlby/uberon-py" }, "release_url": "https://pypi.org/project/uberon-py/0.0a1/", "requires_dist": null, "requires_python": "", "summary": "`uberon_py` is a package for querying the Uberon ontology from python.", "version": "0.0a1" }, "last_serial": 5342557, "releases": { "0.0a1": [ { "comment_text": "", "digests": { "md5": "97093940072eee8da3e7f49021659ca6", "sha256": "8d9258a43b8c3e04bd104b1fcaf4a834fc4e486e9eb999668e2872e8d32aca2a" }, "downloads": -1, "filename": "uberon_py-0.0a1-py2-none-any.whl", "has_sig": false, "md5_digest": "97093940072eee8da3e7f49021659ca6", "packagetype": "bdist_wheel", "python_version": "py2", "requires_python": null, "size": 17267, "upload_time": "2019-05-31T12:21:49", "url": "https://files.pythonhosted.org/packages/a0/b7/368fad1624df58d3fd5860ef51241913d0f8f3df224f507479e285b38f26/uberon_py-0.0a1-py2-none-any.whl" }, { "comment_text": "", "digests": { "md5": "102ce9f31dc69fe21028a99fb3e9eb19", "sha256": "fc85b573c58497cf203ee14b288c6d1070510cf5201307784fdb105f0cafd608" }, "downloads": -1, "filename": "uberon_py-0.0a1.tar.gz", "has_sig": false, "md5_digest": "102ce9f31dc69fe21028a99fb3e9eb19", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 4463, "upload_time": "2019-05-31T12:21:51", "url": "https://files.pythonhosted.org/packages/04/ce/3f1d47ba3f559f4c5d452a51cae9b91eb539e0afa1efef796e8073872143/uberon_py-0.0a1.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "97093940072eee8da3e7f49021659ca6", "sha256": "8d9258a43b8c3e04bd104b1fcaf4a834fc4e486e9eb999668e2872e8d32aca2a" }, "downloads": -1, "filename": "uberon_py-0.0a1-py2-none-any.whl", "has_sig": false, "md5_digest": "97093940072eee8da3e7f49021659ca6", "packagetype": "bdist_wheel", "python_version": "py2", "requires_python": null, "size": 17267, "upload_time": "2019-05-31T12:21:49", "url": "https://files.pythonhosted.org/packages/a0/b7/368fad1624df58d3fd5860ef51241913d0f8f3df224f507479e285b38f26/uberon_py-0.0a1-py2-none-any.whl" }, { "comment_text": "", "digests": { "md5": "102ce9f31dc69fe21028a99fb3e9eb19", "sha256": "fc85b573c58497cf203ee14b288c6d1070510cf5201307784fdb105f0cafd608" }, "downloads": -1, "filename": "uberon_py-0.0a1.tar.gz", "has_sig": false, "md5_digest": "102ce9f31dc69fe21028a99fb3e9eb19", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 4463, "upload_time": "2019-05-31T12:21:51", "url": "https://files.pythonhosted.org/packages/04/ce/3f1d47ba3f559f4c5d452a51cae9b91eb539e0afa1efef796e8073872143/uberon_py-0.0a1.tar.gz" } ] }