{ "info": { "author": "Ivan E. Cao-Berg", "author_email": "icaoberg@alumni.cmu.edu", "bugtrack_url": null, "classifiers": [ "Development Status :: 1 - Planning", "Intended Audience :: Developers", "Intended Audience :: Information Technology", "Intended Audience :: Science/Research", "License :: OSI Approved :: GNU Library or Lesser General Public License (LGPL)", "Programming Language :: Python", "Topic :: Scientific/Engineering :: Bio-Informatics", "Topic :: Scientific/Engineering :: Information Analysis", "Topic :: Scientific/Engineering :: Mathematics" ], "description": "typic\n=====\n\ntypic is a python implementation of the `Typical Image\nChooser `__ as described\nin\n\n- Markey, M.K., Boland, M.V., and Murphy, R.F. (1999) `Towards\n Objective Selection of Representative Microscope\n Images `__.\n Biophysical Journal 76:2230-2237.\n\nTypIC is also available as a\n`service `__ in the\n`Protein Subcellular Location Image Database\n(PSLID) `__; though the latter version is\nnot the one described in this repository.\n\nMaster branch status\n~~~~~~~~~~~~~~~~~~~~\n\n.. image:: https://travis-ci.org/icaoberg/typic.svg?branch=master\n :target: https://travis-ci.org/icaoberg/typic\n\nDevelopment branch status\n~~~~~~~~~~~~~~~~~~~~~~~~~\n\n.. image:: https://travis-ci.org/icaoberg/typic.svg?branch=dev\n :target: https://travis-ci.org/icaoberg/typic\n\nPre-Requisites\n~~~~~~~~~~~~~~\n\n- numpy\n- scipy\n\nTo install the prerequisites in Ubuntu 12.04\n\n::\n\n sudo apt-get install update\n sudo apt-get install python-numpy python-scipy\n\n \n\nInstallation\n~~~~~~~~~~~~\n\nThere are several ways to install typic. The most common way is to\ndownload the source code, unzip/untar the source code package and run\nthe command\n\n::\n\n sudo python setup.py install\n\nI have plans of submitting this package to the Python Package Index. If\nI do so, then should be able to install it by running the command\n\n::\n\n sudo pip install typic\n\n**COMMENT**: halcon depends on `numpy `__ and\n`scipy `__. Installing these packages in Windows\nand MacOSX is not a trivial task. For more information refer to the\ndocumentation.\n\nIf you wish to install typic in a virtual enviroment, then you can do\n\n::\n\n virtualenv typic\n cd typic\n source ./bin/activate\n pip install numpy\n pip install scipy\n mkdir src\n cd src\n git clone git@github.com:icaoberg/typic.git\n cd typic\n python setup.py install\n cd ../../\n deactivate\n\n**COMMENT**: The previous snippet assumes that you have\n`virtualenv `__ installed in\nyour working system.\n\n\n\nDocumentation\n-------------\n\nDocumentation was written using `Sphinx `__. To\ngenerate documentation use the following commands.\n\nTo generate html\n\n::\n\n cd docs\n make html\n\nTo generate PDF document\n\n::\n\n cd docs\n make latexpdf\n\nTo generate epub document\n\n::\n\n cd docs\n make epub\n\nBugs and Questions\n------------------\n\nTo submit bugs about the source code visit\n\nhttps://github.com/icaoberg/typic\n\nTo submit bugs about the documentation visit\n\nhttps://github.com/icaoberg/typic-docs\n\nFor any other inquiries visit those links as well.", "description_content_type": null, "docs_url": null, "download_url": "UNKNOWN", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/icaoberg/typic", "keywords": null, "license": "UNKNOWN", "maintainer": null, "maintainer_email": null, "name": "typic", "package_url": "https://pypi.org/project/typic/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/typic/", "project_urls": { "Download": "UNKNOWN", "Homepage": "https://github.com/icaoberg/typic" }, "release_url": "https://pypi.org/project/typic/0.0.1/", "requires_dist": null, "requires_python": null, "summary": "Python implementation of TypiC: Typical Image Selection", "version": "0.0.1" }, "last_serial": 1055212, "releases": { "0.0.1": [] }, "urls": [] }