{ "info": { "author": "Jorge Ferreira & V\u00edtor Vieira", "author_email": "jorge.ferreira@ceb.uminho.pt", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Intended Audience :: Science/Research", "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", "Programming Language :: Python :: 3.5", "Topic :: Scientific/Engineering :: Bio-Informatics", "Topic :: Software Development :: Libraries :: Python Modules" ], "description": "|License| |PyPI version|\n\nTROPPO\n============\n\n*Troppo* (Tissue-specific RecOnstruction and Phenotype Prediction using Omics data) is a Python package containing methods\nfor tissue specific reconstruction to use with constraint-based models. The main purpose of this package is to provide\nan open-source framework which is both modular and flexible to be integrated with other packages, such as cobrapy, framed\nor cameo whose already provide generic data structures to interpret metabolic models.\n\nA (MI)LP solver is required to use most of the present methods. The current methods support optlang, which in turn allow\nthe use of solvers like CPLEX or Gurobi.\n\nThe current methods implemented are:\n - FastCORE\n - CORDA\n - GIMME\n - (t)INIT\n - iMAT\n\nMethods to be implemented later:\n - MBA\n - mCADRE\n - PRIME\n\nDocumentation\n~~~~~~~~~~~~~\n\n\n\nInstalation from PyPI (stable releases)\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n\n::\n\n pip install troppo\n\nInstalation from github (latest development release)\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n\n::\n\n pip install https://github.com/BioSystemsUM/troppo\n\nCredits and License\n~~~~~~~~~~~~~~~~~~~\n\nDeveloped at the Centre of Biological Engineering, University of Minho\n\nReleased under the GNU Public License (version 3.0).\n\n\n.. |License| image:: https://img.shields.io/badge/license-GPL%20v3.0-blue.svg\n :target: https://opensource.org/licenses/GPL-3.0\n.. |PyPI version| image:: https://badge.fury.io/py/troppo.svg\n :target: https://badge.fury.io/py/troppo", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/BioSystemsUM/troppo", "keywords": "pathway analysis metabolic model", "license": "GNU General Public License v3.0", "maintainer": "", "maintainer_email": "", "name": "troppo", "package_url": "https://pypi.org/project/troppo/", "platform": "", "project_url": "https://pypi.org/project/troppo/", "project_urls": { "Homepage": "https://github.com/BioSystemsUM/troppo" }, "release_url": "https://pypi.org/project/troppo/0.0.2/", "requires_dist": null, "requires_python": "", "summary": "TROPPO - Tissue-specific RecOnstruction and Phenotype Prediction using Omics data", "version": "0.0.2" }, "last_serial": 5222435, "releases": { "0.0.1": [ { "comment_text": "", "digests": { "md5": "3260bea8eeddd6cc8b64659402674abe", "sha256": "ad1120cb2c5b3e918bcc4e9756315f64064395cd6508af7d630e05b77a6508f6" }, "downloads": -1, "filename": "troppo-0.0.1.tar.gz", "has_sig": false, "md5_digest": "3260bea8eeddd6cc8b64659402674abe", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 28147, "upload_time": "2019-05-03T15:14:00", "url": "https://files.pythonhosted.org/packages/0f/de/eca01eff2165ccea0d8f7a7a6fd807c7e3eea79661957ea2fc1b0ef99a08/troppo-0.0.1.tar.gz" } ], "0.0.2": [ { "comment_text": "", "digests": { "md5": "1f036589c328c40c0796cfafa9044e82", "sha256": "e3b5cb1e33205a1ba3e47515e24f3e579ebfbc91e1dc571533d72a6ad37c8bdc" }, "downloads": -1, "filename": "troppo-0.0.2.tar.gz", "has_sig": false, "md5_digest": "1f036589c328c40c0796cfafa9044e82", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 28135, "upload_time": "2019-05-03T15:23:30", "url": "https://files.pythonhosted.org/packages/5e/d2/92eab35de2ad1d61965c6fad855282cd75153e17f2cfd72c08bcf96bc280/troppo-0.0.2.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "1f036589c328c40c0796cfafa9044e82", "sha256": "e3b5cb1e33205a1ba3e47515e24f3e579ebfbc91e1dc571533d72a6ad37c8bdc" }, "downloads": -1, "filename": "troppo-0.0.2.tar.gz", "has_sig": false, "md5_digest": "1f036589c328c40c0796cfafa9044e82", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 28135, "upload_time": "2019-05-03T15:23:30", "url": "https://files.pythonhosted.org/packages/5e/d2/92eab35de2ad1d61965c6fad855282cd75153e17f2cfd72c08bcf96bc280/troppo-0.0.2.tar.gz" } ] }