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        "author": "Sebastian Bank",
        "author_email": "sebastian.bank@uni-leipzig.de",
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            "Development Status :: 5 - Production/Stable",
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            "License :: OSI Approved :: MIT License",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 3",
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        "description": "Glottolog ``treedb``\n====================\n\n|PyPI version| |License| |Supported Python| |Wheel|\n\n|Build| |Codecov|\n\nThis tool loads the content of the `languoids/tree`_ directory from the\nGlottolog_ `master repo`_ into a normalized SQLite_ database.\n\nEach file under in that directory contains the definition of one Glottolog\nlanguoid_. Loading their content into a relational database allows to perform\nsome advanced consistency checks (example_) and in general to execute queries\nthat inspect the languoid tree relations in a compact and performant way (e.g.\nwithout repeatedly traversing the directory tree).\n\nSee pyglottolog_ for the more general official Python API to work with the repo\nwithout a mandatory initial loading step (also provides programmatic access to\nthe references_ and a convenient command-line interface).\n\nThe database can be exported into a ZIP file containing one CSV file for\neach database table, or written into a single denormalized CSV file with one\nrow per languoid (via a provided `SQL query`_).\n\nAs sqlite_ is the `most widely used`_ database, the database file itself\n(e.g. ``treedb.sqlite3``) can be queried directly from most programming\nenvironments. It can also be examined using graphical interfaces such as\nDBeaver_, or via the `sqlite3 cli`_.\n\nPython users can also use the provided SQLAlchemy_ models_ to build queries or\nadditional abstractions programmatically using `SQLAlchemy core`_ or the ORM_\n(as more maintainable alternative to hand-written SQL queries).\n\n\nLinks\n-----\n\n- GitHub: https://github.com/glottolog/treedb\n- PyPI: https://pypi.org/project/treedb/\n- Example: https://nbviewer.jupyter.org/github/glottolog/treedb/blob/master/Stats.ipynb\n- Changelog: https://github.com/glottolog/treedb/blob/master/CHANGES.rst\n- Issue Tracker: https://github.com/glottolog/treedb/issues\n- Download: https://pypi.org/project/treedb/#files\n\n\nQuickstart\n----------\n\nInstall ``treedb`` (and dependencies):\n\n.. code:: bash\n\n    $ pip install treedb\n\nClone the Glottolog `master repo`_ :\n\n.. code:: bash\n\n    $ git clone https://github.com/glottolog/glottolog.git\n\nNote: ``treedb`` expects to find it under ``./glottolog/`` by default (i.e. under\nthe current directory), use ``treedb.set_root()`` to point it to a different\npath.\n\nLoad ``./glottolog/languoids/tree/**/md.ini`` into an in-memory ``sqlite3`` database.\nWrite the denormalized example query into ``treedb.query.csv``:\n\n.. code:: bash\n\n    $ python -c \"import treedb; treedb.load(); treedb.write_csv()\"\n\n\nUsage from Python\n------------------\n\nStart a Python shell:\n\n.. code:: bash\n\n    $ python\n\nImport the package:\n\n.. code:: python\n\n    >>> import treedb\n\nUse ``treedb.iterlanguoids()`` to iterate over languoids as (<path>, ``dict``) pairs:\n\n.. code:: python\n\n    >>> next(treedb.iterlanguoids())\n    (('abin1243',), {'id': 'abin1243', 'parent_id': None, 'level': 'language', ...\n\nNote: This is a low-level interface, which does not require loading.\n\nLoad the database into ``treedb.sqlite3`` (and set the default ``engine``):\n\n.. code:: python\n\n    >>> treedb.load('treedb.sqlite3')\n    ...\n    <treedb._proxies.SqliteEngineProxy filename='treedb.sqlite3' ...>\n\nRun consistency checks:\n\n.. code:: python\n\n    >>> treedb.check()\n    ...\n    True\n\nExport into a ZIP file containing one CSV file per database table:\n\n.. code:: python\n\n    >>> treedb.csv_zipfile()\n    ...Path('treedb.zip')\n\nExecute the example query and write it into a CSV file with one row per languoid:\n\n.. code:: python\n\n    >>> treedb.write_csv()\n    ...Path('treedb.query.csv')\n\nRebuild the database (e.g. after an update):\n\n.. code:: python\n\n    >>> treedb.load(rebuild=True)\n    ...\n    <treedb._proxies.SqliteEngineProxy filename='treedb.sqlite3' ...>\n\nExecute a simple query with ``sqlalchemy`` core and write it to a CSV file:\n\n.. code:: python\n\n    >>> import sqlalchemy as sa\n    >>> treedb.write_csv(sa.select(treedb.Languoid), filename='languoids.csv')\n    ...Path('languoids.csv')\n\nGet one row from the ``languoid`` table via `sqlalchemy` core (in Glottocode order):\n\n.. code:: python\n\n    >>> next(treedb.iterrows(sa.select(treedb.Languoid)))\n    ('3adt1234', '3Ad-Tekles', 'dialect', 'nort3292', None, None, None, None)\n\nGet one ``Languoid`` model instance via ``sqlalchemy`` orm (in Glottocode order):\n\n.. code:: python\n\n    >>> session = treedb.Session()\n    >>> session.query(treedb.Languoid).first()\n    <Languoid id='3adt1234' level='dialect' name='3Ad-Tekles'>\n    >>> session.close()\n\n\nSee also\n--------\n\n- pyglottolog_ |--| official Python API to access https://github.com/glottolog/glottolog\n\n\nLicense\n-------\n\nThis tool is distributed under the `MIT license`_.\n\n\n.. _Glottolog: https://glottolog.org/\n.. _master repo: https://github.com/glottolog/glottolog\n.. _languoids/tree: https://github.com/glottolog/glottolog/tree/master/languoids/tree\n.. _SQLite: https://sqlite.org\n.. _languoid: https://glottolog.org/meta/glossary#Languoid\n.. _example: https://github.com/glottolog/treedb/blob/36c7cdcdd017e7aa4386ef085ee84fb3036c01ca/treedb/checks.py#L154-L169\n.. _pyglottolog: https://github.com/glottolog/pyglottolog\n.. _references: https://github.com/glottolog/glottolog/tree/master/references\n.. _SQL query: https://github.com/glottolog/treedb/blob/master/treedb/queries.py\n.. _most widely used: https://www.sqlite.org/mostdeployed.html\n.. _DBeaver: https://dbeaver.io/\n.. _sqlite3 cli: https://sqlite.org/cli.html\n.. _SQLAlchemy: https://www.sqlalchemy.org\n.. _models: https://github.com/glottolog/treedb/blob/master/treedb/models.py\n.. _SQLAlchemy Core: https://docs.sqlalchemy.org/en/latest/core/\n.. _ORM: https://docs.sqlalchemy.org/en/latest/orm/\n.. _venv: https://docs.python.org/3/library/venv.html\n\n.. _MIT license: https://opensource.org/licenses/MIT\n\n\n.. |--| unicode:: U+2013\n\n\n.. |PyPI version| image:: https://img.shields.io/pypi/v/treedb.svg\n    :target: https://pypi.org/project/treedb/\n    :alt: Latest PyPI Version\n.. |License| image:: https://img.shields.io/pypi/l/treedb.svg\n    :target: https://github.com/glottolog/treedb/blob/master/LICENSE.txt\n    :alt: License\n.. |Supported Python| image:: https://img.shields.io/pypi/pyversions/treedb.svg\n    :target: https://pypi.org/project/treedb/\n    :alt: Supported Python Versions\n.. |Wheel| image:: https://img.shields.io/pypi/wheel/treedb.svg\n    :target: https://pypi.org/project/treedb/#files\n    :alt: Wheel format\n\n.. |Build| image:: https://github.com/glottolog/treedb/actions/workflows/build.yaml/badge.svg?branch=master\n    :target: https://github.com/glottolog/treedb/actions/workflows/build.yaml?query=branch%3Amaster\n    :alt: Build\n.. |Codecov| image:: https://codecov.io/gh/glottolog/treedb/branch/master/graph/badge.svg\n    :target: https://codecov.io/gh/glottolog/treedb\n    :alt: Codecov\n\n\n",
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