{ "info": { "author": "Matteo Mancini", "author_email": "ingmatteomancini@gmail.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 2 - Pre-Alpha", "Intended Audience :: Developers", "License :: OSI Approved :: MIT License", "Natural Language :: English", "Programming Language :: Python :: 2", "Programming Language :: Python :: 2.7", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.4", "Programming Language :: Python :: 3.5", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7" ], "description": "==========\nTRAMPOLINO\n==========\n\n\n.. image:: https://img.shields.io/pypi/v/trampolino.svg\n :target: https://pypi.python.org/pypi/trampolino\n\n.. image:: https://img.shields.io/travis/matteomancini/trampolino.svg\n :target: https://travis-ci.org/matteomancini/trampolino\n\n.. image:: https://readthedocs.org/projects/trampolino/badge/?version=latest\n :target: https://trampolino.readthedocs.io/en/latest/?badge=latest\n :alt: Documentation Status\n\n\n\n\nTRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a command line interface tool\nfor brain tractography. It leverages the Nipype Python package to offer an immediate way to\nreconstruct an orientation distribution function, use it to track the streamlines and\neventually filter them, all using existing software toolboxes.\n\nAt the moment it is under active development and support mainly MRtrix but the plan\nis to include as many software alternatives as possible.\n\n\n* Free software: MIT license\n* Documentation: https://trampolino.readthedocs.io.\n\n\nFeatures\n========\n\n* Composable command line interfaces built using the Click Python package;\n* One-command generation of multiple results using different parameters (e.g. angular thresholds, tracking algorithm);\n* Ensemble tractography implementation;\n\nRequirements\n============\n\nTRAMPOLINO requires the GraphViz_ visualization software and the MRtrix3_ tool.\n\n\n\nInstalling TRAMPOLINO\n=====================\nTRAMPOLINO can be easily installed using pip::\n\n pip install trampolino\n\nRunning TRAMPOLINO\n==================\nTo try TRAMPOLINO, you can download some example data using this script::\n\n get_example_data\n\nIt will download the Sherbrooke multi-shell dataset from DiPy_. Then you can run::\n\n trampolino -n msmt_csd -r example_results recon -i sherbrooke_3shell/dwi.nii.gz -v sherbrooke_3shell/bvec.txt -b sherbrooke_3shell/bval.txt mrtrix_msmt_csd track --angle 30,45 --algorithm iFOD2,SD_Stream mrtrix_tckgen\n\nAnd you have your first results!\n\nCredits\n-------\n\nThis package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.\n\n.. _GraphViz: http://www.graphviz.org\n.. _MRtrix3: https://github.com/MRtrix3/mrtrix3\n.. _DiPy: https://github.com/nipy/dipy\n.. _Cookiecutter: https://github.com/audreyr/cookiecutter\n.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage\n\n\n=======\nHistory\n=======\n\n0.1.0 (2019-08-25)\n------------------\n\n* First release on PyPI.", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/matteomancini/trampolino", "keywords": "trampolino", "license": "MIT license", "maintainer": "", "maintainer_email": "", "name": "trampolino", "package_url": "https://pypi.org/project/trampolino/", "platform": "", "project_url": "https://pypi.org/project/trampolino/", "project_urls": { "Homepage": "https://github.com/matteomancini/trampolino" }, "release_url": "https://pypi.org/project/trampolino/0.1.4/", "requires_dist": null, "requires_python": "", "summary": "A meta-pipeline tool for tractography based on Nipype.", "version": "0.1.4" }, "last_serial": 5961857, "releases": { "0.1.1": [ { "comment_text": "", "digests": { "md5": "e6d499681dfde7e714a5fb95a11d966e", "sha256": "6a55d444d95ad46e7ac09644c5e2e15824f3f52fe626cf3d0804c90dd5d1843c" }, "downloads": -1, "filename": "trampolino-0.1.1.tar.gz", "has_sig": false, "md5_digest": "e6d499681dfde7e714a5fb95a11d966e", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 25782, "upload_time": "2019-09-10T21:10:02", "url": "https://files.pythonhosted.org/packages/36/9a/fbc41bc93f2f2d1886b8a6c649dddc3c9ad47c89cce9b32332d1a14577ac/trampolino-0.1.1.tar.gz" } ], "0.1.2": [ { "comment_text": "", "digests": { "md5": "43bca20120701b9ef206f560b642e4ca", "sha256": "d452c453f5ade71985d05625b53562c018f4e129646930e32699f5fde50c3abf" }, "downloads": -1, "filename": "trampolino-0.1.2.tar.gz", "has_sig": false, "md5_digest": "43bca20120701b9ef206f560b642e4ca", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 26020, "upload_time": "2019-09-11T22:59:30", "url": "https://files.pythonhosted.org/packages/6b/75/c3609a5410dd7dfe5f67e43c355d3afa547abae5be4231b465fb3f74c471/trampolino-0.1.2.tar.gz" } ], "0.1.3": [ { "comment_text": "", "digests": { "md5": "4d5dbb66aaae3695b0b73bf4ab29acad", "sha256": "7a74c1df2f29e7d150b288f8a05d65df8a8e85a910aa8befd6b6af0e9aefefc2" }, "downloads": -1, "filename": "trampolino-0.1.3.tar.gz", "has_sig": false, "md5_digest": "4d5dbb66aaae3695b0b73bf4ab29acad", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 26127, "upload_time": "2019-09-12T21:45:12", "url": "https://files.pythonhosted.org/packages/07/64/67d0cbe04c518910d8dc6795978b06081ec532d30326d88977c7a6dc9f4f/trampolino-0.1.3.tar.gz" } ], "0.1.4": [ { "comment_text": "", "digests": { "md5": "14f46125c74b9bfacd1f8bce6716f696", "sha256": "a970cc1e70c81fe1a408c2da4fb230e2b1e7b8858bd57bb954204ef8ff837d64" }, "downloads": -1, "filename": "trampolino-0.1.4.tar.gz", "has_sig": false, "md5_digest": "14f46125c74b9bfacd1f8bce6716f696", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 27819, "upload_time": "2019-10-11T20:12:47", "url": "https://files.pythonhosted.org/packages/01/90/12bf1e187de3519802a636cc406a41e956f1c68f20977dc0dc92b5fc88fc/trampolino-0.1.4.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "14f46125c74b9bfacd1f8bce6716f696", "sha256": "a970cc1e70c81fe1a408c2da4fb230e2b1e7b8858bd57bb954204ef8ff837d64" }, "downloads": -1, "filename": "trampolino-0.1.4.tar.gz", "has_sig": false, "md5_digest": "14f46125c74b9bfacd1f8bce6716f696", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 27819, "upload_time": "2019-10-11T20:12:47", "url": "https://files.pythonhosted.org/packages/01/90/12bf1e187de3519802a636cc406a41e956f1c68f20977dc0dc92b5fc88fc/trampolino-0.1.4.tar.gz" } ] }