{ "info": { "author": "GNU Solidario", "author_email": "health@gnusolidario.org", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Environment :: Web Environment", "Framework :: Flask", "Intended Audience :: Healthcare Industry", "Intended Audience :: Science/Research", "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)", "Natural Language :: English", "Operating System :: OS Independent", "Programming Language :: Python :: 3", "Topic :: Scientific/Engineering :: Bio-Informatics", "Topic :: Scientific/Engineering :: Medical Science Apps." ], "description": "Thalamus: The GNU Health Message and Authentication Server\n==========================================================\n\nThe Thalamus project provides a RESTful API hub to all the GNU Health \nFederation nodes. The main functions are:\n\n#. **Message server**: A concentrator and message relay from and to \n the participating nodes in the GNU Health Federation and the GNU Health\n Information System (PgSQL). Some of the participating nodes include \n the GNU Health HMIS, MyGNUHealth mobile PHR application,\n laboratories, research institutions and civil offices.\n\n#. **Authentication Server**: Thalamus also serves as an authentication and\n authorization server to interact with the GNUHealth Information System\n\n\nThalamus is part of the GNU Health project, but it is a self contained, \nindependent server that can be used in different health related scenarios.\n\nInstallation\n------------\nThalamus is pip-installable::\n\n $ pip3 install --user thalamus \n \nTechnology\n----------\nRESTful API: Thalamus uses a REST (Representional State Transfer) \narchitectural style, powered by \n`Flask `_ technology\n\nThalamus will perform CRUD (Create, Read, Update, Delete) operations. They\nwill be achived via the following methods upon resources and their instances.\n\n* **GET** : Read\n \n* **POST** : Create\n \n* **PATCH** : Update\n \n* **DELETE** : Delete.\n\nThe DELETE operations will be minimal.\n \n\nJSON: The information will be encoded in `JSON `_ format.\n\nResources\n---------\n\nSome resources and end-points are:\n\n* People (/people)\n\n* Pages of Life (/pols)\n\n* DomiciliaryUnits (/domiciliary-units)\n\n* PersonalDocs (/personal_docs)\n\n\nRunning Thalamus from a WSGI Container\n--------------------------------------\nIn production settings, for performance reasons you should use a HTTP server.\nWe have chosen `uWSGI `_ , but you can use any WSGI server. We have\nalso included the configuration file for Gunicorn if you prefer it instead of uWSGI.\n\nFor example, you can run the Thalamus application from uWSGI as follows.\nThe default configuration file uses secure (SSL) connections::\n\n $ uwsgi --ini etc/thalamus_uwsgi.ini\n\n\nFor development, ff you want to run it directly from the Flask Werkzeug server,::\n\n $ python ./thalamus.py\n\n\nExamples\n--------\n**Command-line, using httpie**\n\nRetrieve the demographic information of person::\n\n $ http --verify no --auth ITAPYT999HON:gnusolidario https://localhost:8443/people/ESPGNU777ORG\n\nYields to::\n\n HTTP/1.1 200 OK\n Connection: close\n Content-Length: 411\n Content-Type: application/json\n Date: Fri, 21 Apr 2017 16:22:38 GMT\n Server: gunicorn/19.7.1\n\n {\n \"_id\": \"ESPGNU777ORG\",\n \"active\": true,\n \"biological_sex\": \"female\",\n \"dob\": \"Fri, 04 Oct 1985 13:05:00 GMT\",\n \"education\": \"tertiary\",\n \"ethnicity\": \"latino\",\n \"gender\": \"female\",\n \"lastname\": \"Betz\",\n \"marital_status\": \"married\",\n \"name\": \"Ana\",\n \"password\": \"$2b$12$cjrKVGYEKUwCmVDCtEnwcegcrmECTmeBz526AAD/ZqMGPWFpHJ4FW\",\n \"profession\": \"teacher\",\n \"roles\": [\n \"end_user\"\n ]\n \n }\n\n**Retrieve the demographics information globally**::\n\n $ http --verify no --auth ITAPYT999HON:gnusolidario https://localhost:8443/people\n\nYields to::\n\n HTTP/1.1 200 OK\n Connection: close\n Content-Length: 933\n Content-Type: application/json\n Date: Fri, 21 Apr 2017 16:31:23 GMT\n Server: gunicorn/19.7.1\n\n [\n {\n \"_id\": \"ITAPYT999HON\",\n \"active\": true,\n \"biological_sex\": \"female\",\n \"dob\": \"Fri, 05 Oct 1984 09:00:00 GMT\",\n \"education\": \"tertiary\",\n \"ethnicity\": \"latino\",\n \"gender\": \"female\",\n \"lastname\": \"Cordara\",\n \"marital_status\": \"married\",\n \"name\": \"Cameron\",\n \"password\": \"$2b$12$Y9rX7PoTHRXhTO1H78Tan.8mVmyayGAUIveiYxu2Qeo0ZDRvJQ8/2\",\n \"profession\": \"teacher\",\n \"roles\": [\n \"end_user\",\n \"health_professional\"\n ]\n \n },\n \n {\n \"_id\": \"ESPGNU777ORG\",\n \"active\": true,\n \"biological_sex\": \"female\",\n \"dob\": \"Fri, 04 Oct 1985 13:05:00 GMT\",\n \"education\": \"tertiary\",\n \"ethnicity\": \"latino\",\n \"gender\": \"female\",\n \"lastname\": \"Betz\",\n \"marital_status\": \"married\",\n \"name\": \"Ana\",\n \"password\": \"$2b$12$cjrKVGYEKUwCmVDCtEnwcegcrmECTmeBz526AAD/ZqMGPWFpHJ4FW\",\n \"profession\": \"teacher\",\n \"roles\": [\n \"end_user\"\n ]\n \n }\n \n ]\n \n\n**Using Python requests**::\n\n >>> import requests\n >>> person = requests.get('https://localhost:8443/people/ESPGNU777ORG', auth=('ITAPYT999HON', 'gnusolidario'), verify=False)\n >>> person.json()\n {'_id': 'ESPGNU777ORG', 'active': True, 'biological_sex': 'female','dob': 'Fri, 04 Oct 1985 13:05:00 GMT',\n 'education': 'tertiary', 'ethnicity': 'latino', 'gender': 'female', 'lastname': 'Betz', 'marital_status': 'married',\n 'name': 'Ana', 'password': '$2b$12$cjrKVGYEKUwCmVDCtEnwcegcrmECTmeBz526AAD/ZqMGPWFpHJ4FW', 'profession': 'teacher',\n 'roles': ['end_user']}\n\n**Note on roles**\nThe demo user \"ITAPYT999HON\" is a health professional (health_professional role),\nso she has global access to demographic information. \n\nThe user \"ARGBUE111FAV\", password \"freedom\". 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