{ "info": { "author": "Jacki Novik", "author_email": "jackinovik@gmail.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 3 - Alpha", "Environment :: Console", "Intended Audience :: Science/Research", "License :: OSI Approved :: Apache Software License", "Operating System :: OS Independent", "Programming Language :: Python", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": ".. survivalstan documentation master file, created by\n sphinx-quickstart on Fri Jan 6 06:25:53 2017.\n You can adapt this file completely to your liking, but it should at least\n contain the root `toctree` directive.\n\nSurvivalstan\n============\n\nSurvivalstan is a library of Survival Models written in `Stan `_ \n\nIt also contains a number of utility functions helpful when doing survival analysis. \n\nTypical usage:\n \n:: \n \n import survivalstan\n # .. prep your data\n fit1 = survivalstan.fit_stan_survival_model(...)\n survivalstan.utils.plot_stan_summary([fit1], metric=\u2019Rhat\u2019) \n survivalstan.utils.plot_coefs([fit1])\n\nFeatures\n--------\n\n- Variety of standard survival models\n - Weibull, Exponential, and Gamma parameterization\n - A variety of semi-parametric and non-parametric baseline hazards\n - Supports time-varying-coefficients\n - Estimate time-varying effects\n - Varying-effects by group\n- Extensible framework - bring your own Stan code, or edit the models provided\n- Uses `pandas `_ data frames & `patsy `_ formulas\n- Graphical posterior predictive checking\n- Plot posterior estimates of key parameters using `seaborn `_\n- Annotated posterior draws of parameter estimates, as `pandas `_ dataframes\n- Supports caching via `stancache `_ or `pystan-cache `_\n\nInstallation\n------------\n\nInstall survivalstan via pip:\n\n::\n\n pip install survivalstan\n\nContribute\n----------\n\n- Issue Tracker: http://github.com/hammerlab/survivalstan/issues\n- Source Code: http://github.com/survivalstan/survivalstan\n\nSupport\n-------\n\nIf you are having issues or questions, please let us know.\n\nPlease submit an issue `github `_ or via `gitter `_ \n\nLicense\n-------\n\nThe project is licensed under the Apache 2.0 license.\n\n\nDocumentation\n-------------\n\n`Documentation http://jburos.github.io/survivalstan`_ is available online.", "description_content_type": "", "docs_url": null, "download_url": "https://github.com/hammerlab/survivalstan/tarball/0.1.2.8", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/hammerlab/survivalstan", "keywords": "", "license": "http://www.apache.org/licenses/LICENSE-2.0.html", "maintainer": "", "maintainer_email": "", "name": "survivalstan", "package_url": "https://pypi.org/project/survivalstan/", "platform": "", "project_url": "https://pypi.org/project/survivalstan/", "project_urls": { "Download": "https://github.com/hammerlab/survivalstan/tarball/0.1.2.8", 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