{ "info": { "author": "Greene Lab", "author_email": "team@greenelab.com", "bugtrack_url": null, "classifiers": [ "Intended Audience :: Developers", "License :: OSI Approved :: BSD License", "Operating System :: OS Independent", "Programming Language :: Python", "Programming Language :: Python :: 2.7", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "Amy Campbell, 2016\n\n\nstaNMF\n------\nPython 2.7 implementation of `Siqi Wu et al.'s 2016 stability NMF (staNMF)\n`_\n\nPackage Contents\n----------------\n\n=========\nstaNMF.py\n=========\nstaNMF.py class includes the necessary methods to perform stability\nNMF on a user-specified .csv datase (see sourcecode/staNMF_Example for precise\nusage instructions)\n\n=================\nstaNMF_Example.py\n=================\nExample of staNMF demonstrated on Wu et al.'s 2016\ndrosophila spatial expression data between K=15 and K=30; Generates\nsample factorizations, calculates instability index, and plots 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