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        "author": "C. Titus Brown",
        "author_email": "titus@idyll.org",
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            "Development Status :: 5 - Production/Stable",
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            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: BSD License",
            "Natural Language :: English",
            "Operating System :: MacOS :: MacOS X",
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            "Programming Language :: C++",
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            "Programming Language :: Python :: 3.5",
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            "Topic :: Scientific/Engineering :: Bio-Informatics"
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        "description": "# sourmash\n\n[![Documentation](https://readthedocs.org/projects/sourmash/badge/?version=latest)](http://sourmash.readthedocs.io/en/latest/)\n[![Build Status](https://travis-ci.com/dib-lab/sourmash.svg?branch=master)](https://travis-ci.com/dib-lab/sourmash)\n[![codecov](https://codecov.io/gh/dib-lab/sourmash/branch/master/graph/badge.svg)](https://codecov.io/gh/dib-lab/sourmash)\n[![DOI](http://joss.theoj.org/papers/10.21105/joss.00027/status.svg)](http://joss.theoj.org/papers/10.21105/joss.00027)\n\nCompute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.\n\nUsage:\n\n    sourmash compute *.fq.gz\n    sourmash compare *.sig -o distances\n    sourmash plot distances\n\nSourmash 1.0 is [published on JOSS](https://doi.org/10.21105/joss.00027); please cite that paper if you use sourmash (`doi: 10.21105/joss.00027`):.\n\n----\n\nThe name is a riff off of [Mash](https://github.com/marbl/Mash),\ncombined with @ctb's love of whiskey.\n([Sour mash](https://en.wikipedia.org/wiki/Sour_mash) is used in\nmaking whiskey.)\n\nPrimary authors: [C. Titus Brown](mailto:titus@idyll.org) ([@ctb](http://github.com/ctb)) and [Luiz C. Irber, Jr](mailto:sourmash@luizirber.org) ([@luizirber](http://github.com/luizirber)).\n\nsourmash is a product of the\n[Lab for Data-Intensive Biology](http://ivory.idyll.org/lab/) at the\n[UC Davis School of Veterinary Medicine](http://www.vetmed.ucdavis.edu).\n\n## Installation\n\nWe recommend using bioconda to install sourmash:\n\n```\nconda install -c conda-forge -c bioconda sourmash\n```\nThis will install the latest stable version of sourmash 2.\n\nYou can also use pip to install sourmash:\n\n```\npip install sourmash\n```\n\nA quickstart tutorial [is available](https://sourmash.readthedocs.io/en/latest/tutorials.html).\n\n### Requirements\n\nsourmash runs under both Python 2.7.x and Python 3.5+.  The base\nrequirements are screed and ijson, together with a C++ development\nenvironment and the CPython development headers and libraries (for the\nC++ extension).\n\nThe comparison code (`sourmash compare`) uses numpy, and the plotting\ncode uses matplotlib and scipy, but most of the code is usable without\nthese.\n\nFor `search` and `gather` you also need `khmer` version 2.1+.\n\n### Installation with conda\n\nBioconda is a channel for the [conda](http://conda.pydata.org/docs/intro.html) package manager with a focus on bioinformatics software. After installing conda you will need to add the bioconda channel as well as the [other channels](https://bioconda.github.io/index.html#set-up-channels) bioconda depends on. Once you have setup bioconda, you can install sourmash by running:\n\n```bash\n$ conda create -n sourmash_env -c conda-forge -c bioconda sourmash python=3.7\n$ source activate sourmash_env\n$ sourmash compute -h\n```\n\nwhich will install the latest alpha release.\n\n## Support\n\nPlease ask questions and files issues\n[on Github](https://github.com/dib-lab/sourmash/issues).\n\n## Development\n\nDevelopment happens on github at\n[dib-lab/sourmash](https://github.com/dib-lab/sourmash).\n\nAfter installation, `sourmash` is the main command-line entry point;\nrun it with `python -m sourmash`, or do `pip install -e /path/to/repo` to\ndo a developer install in a virtual environment.\n\nThe `sourmash/` directory contains the library code.\n\nTests require py.test and can be run with `make test`.\n\nPlease see [the developer notes](doc/developer.md) for more information.\n\n----\n\nCTB\nDec 2018",
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        "name": "sourmash",
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