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        "author_email": "dr9@sanger.ac.uk",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "Environment :: Web Environment",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Operating System :: MacOS",
            "Operating System :: POSIX",
            "Programming Language :: Python :: 2",
            "Programming Language :: Python :: 2.6",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.3",
            "Programming Language :: Python :: 3.4",
            "Programming Language :: Python :: 3.5",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
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        "description": "######\nSnoopy\n######\n\nBrowser based quality control tool to expedite reviewing predicted variants in next generation sequencing files.\n\n************\nRequirements\n************\n\nSnoopy has been tested on\n\n* Mac OS X\n* Ubuntu\n\nAnd requires\n\n* python (2 or 3)\n* a modern web browser\n\nIf your files reside on a server without HTTP/S access snoopy can access this but will require `samtools <http://www.htslib.org/>`_  to be installed and in your path.\n\n************\nInstallation\n************\n\n::\n\n    pip install snoopy\n\n\n*******\nAuthors\n*******\n\n* Daniel Rice (dr9@sanger.ac.uk)\n* Jeff Barrett\n\n\n*************\nDocumentation\n*************\n\nAll documentation is at `Read the Docs <http://snoopy.readthedocs.io/>`_.\n\n\n\nFAQs\n====\n\nOn Ubuntu, Failed building wheel for cryptography\n-------------------------------------------------\n\nSnoopy requires the python package paramiko which in turn requires cryptography. According to `this stackoverflow question <http://stackoverflow.com/questions/22073516/failed-to-install-python-cryptography-package-with-pip-and-setup-py>`_ in order to install cryptography on Debian and Ubuntu you must first::\n\n    sudo apt-get install build-essential libssl-dev libffi-dev python-dev\n\nand on Fedora and RHEL-derivatives::\n\n    sudo yum install gcc libffi-devel python-devel openssl-devel\n\n\nOn Ubuntu, npm start fails with Error: watch ENOSPC\n---------------------------------------------------\n\nAccording to https://discourse.roots.io/t/gulp-watch-error-on-ubuntu-14-04-solved/3453 this is caused by a limit for how many files can be watched by a user and can be updated with::\n\n    echo fs.inotify.max_user_watches=582222 | sudo tee -a /etc/sysctl.conf && sudo sysctl -p\n\n\n\n\n***********\nDevelopment\n***********\n\nTo install snoopy for development purposes, if you don't have this already install `Node Version Manager <https://github.com/creationix/nvm>`_ and use it to install v4.4.5 of Node::\n\n    $ nvm install v.4.4.5\n    $ nvm use v4.4.5\n\nClone the repository::\n\n    $ git clone --recursive https://github.com/wtsi-medical-genomics/snoopy.git\n\nBuild dalliance::\n\n    $ cd snoopy/snoopy/dalliance\n    $ npm install -g gulp\n    $ npm install\n    $ gulp\n\nBuild snoopy::\n\n    $ cd .. # now in snoopy/snoopy/\n    $ npm install\n    $ npm start\n\n\n*******\nLicense\n*******\n\nCopyright (c) 2016 Genome Research Ltd.\n\nThis program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\n\nThis program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.\n\nYou should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.",
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        "keywords": "quality control qc variants next generation sequencing bam cram",
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