{
    "info": {
        "author": "Adrian Altenhoff",
        "author_email": "adrian.altenhoff@inf.ethz.ch",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 3 - Alpha",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: Mozilla Public License 2.0 (MPL 2.0)",
            "Programming Language :: Python :: 2",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.3",
            "Programming Language :: Python :: 3.4",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "How to install siblings\n=======================\n\nin principle, a \n- pip install -e . (from the repostitory root)\nshould do the work. But unfortunately, the pytable package does not properly\nresolve all its dependencies. Hence, pytables needs to be already installed.\nSee http://www.pytables.org/moin/Downloads for description (a longer version\nis contained in the documentation)\n\ninstalling in ubuntu allows for:\nsudo apt-get install python-tables\nbut depending on the ubuntu version, the package might be quite outdated. \n\ninstead, I used:\nsudo apt-get install libhdf5-serial-dev libbz2-dev liblzo2-dev\npip install numpy\npip install numexpr\npip install cython\npip install tables\n\n\nand finally, install the siblings package\n- pip install -e .\n\n\nExample session of direct siblings usage (not as a server)\n==========================================================\n\nimport siblings\n\nr = siblings.Reader('/path/to/master/file.h5')\ngenomes = r.genomes\nfilterCond = siblings.QueryFilter('Score>500 & PamDistance<100')\nidtype = r.createReturnIdType('UniProtKB/TrEMBL','SourceAC')\nres = r.getMatchesBetweenGenomePair(genomes[1],genomes[2], matchFilter=filterCond, idType=idtype)\n\nprint(len(res['data']))\nprint(res['colnames'])\nprint(res['data'][0:10])\n\n\nres = r.getHomologsOfGene(genomes[0],1,idType=idtype)\n",
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        "home_page": "http://siblings.ch",
        "keywords": "bioinformatics homology homologs Smith-Waterman resource REST",
        "license": "MPL 2.0",
        "maintainer": null,
        "maintainer_email": null,
        "name": "siblings",
        "package_url": "https://pypi.org/project/siblings/",
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            "Homepage": "http://siblings.ch"
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        "release_url": "https://pypi.org/project/siblings/0.4.0/",
        "requires_dist": null,
        "requires_python": null,
        "summary": "Siblings is a code base to compute homologs between genomes and make them publicly available through a REST api",
        "version": "0.4.0"
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