{ "info": { "author": "Sven Thiele", "author_email": "sthiele78@gmail.com", "bugtrack_url": null, "classifiers": [], "description": "Installation\r\n------------\r\n\r\nYou can install shogen2 by running::\r\n\r\n\t$ pip install shogen2\r\n\r\n\r\nUsage\r\n-----\r\n\r\nTypical usage is::\r\n \t\r\n \t$ shogen2.py [options] genomefile metabolismfile.sbml catalysationfile queries\r\n \t\r\n\tOptions:\r\n\t -h, --help show this help message and exit\r\n\t -k K, --k=K Number of ranked shortest genome segments (Default to 5)\r\n\t -l L, --l=L maximum length of a genome segment (Default to 200)\r\n \r\n\r\nSamples\r\n-------\r\n\r\nSample files for finding functional gene units in e. coli are available here:\r\n genome.txt_ metabolism.sbml_ catalyze.txt_ queries.txt_\r\n \r\n.. _genome.txt: http://bioasp.github.io/downloads/samples/ecoli_K12data/genome.txt\r\n.. _metabolism.sbml: http://bioasp.github.io/downloads/samples/ecoli_K12data/metabolism.sbml\r\n.. _catalyze.txt: http://bioasp.github.io/downloads/samples/ecoli_K12data/catalyze.txt\r\n.. _queries.txt: http://bioasp.github.io/downloads/samples/ecoli_K12data/queries.txt", "description_content_type": null, "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "http://bioasp.github.io/shogen/", "keywords": "", "license": "GPLv3+", "maintainer": "", "maintainer_email": "", "name": "shogen2", "package_url": "https://pypi.org/project/shogen2/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/shogen2/", "project_urls": { "Homepage": "http://bioasp.github.io/shogen/" }, "release_url": "https://pypi.org/project/shogen2/1.1.1/", "requires_dist": null, "requires_python": null, "summary": "Finding shortest genome segments that regulate metabolic pathways", "version": "1.1.1" }, "last_serial": 1839544, "releases": { "1.0": [ { "comment_text": "", "digests": { "md5": "4ea01e331e0df29865a562633ff29e28", "sha256": "74bd7bf8da9204979f681b0f0098c370ad0f990c8c96e3402fa03b0c99e7a6ef" }, "downloads": -1, "filename": "shogen2-1.0.tar.gz", "has_sig": false, "md5_digest": "4ea01e331e0df29865a562633ff29e28", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 852496, "upload_time": "2014-01-17T09:18:20", "url": "https://files.pythonhosted.org/packages/bb/0a/1796c8988969f6050a03d15fef16b119f5dbb74ccf9baf53d1cd0e8b6ab8/shogen2-1.0.tar.gz" } ], "1.1": [ { "comment_text": "", "digests": { "md5": "1e557320017e6f7b24b2d7e58c48bbb0", "sha256": "ab41a085d0782f9f6414a23ecca59f5d35b817b8afe0605014deb8fd6dc191a4" }, "downloads": -1, "filename": "shogen2-1.1.tar.gz", "has_sig": false, "md5_digest": "1e557320017e6f7b24b2d7e58c48bbb0", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 6847, "upload_time": "2014-03-04T12:28:49", "url": "https://files.pythonhosted.org/packages/89/84/8ea924761acebd39b0508e0c6326a10cfe2bf8c3247e98d43e71ba5f2ee5/shogen2-1.1.tar.gz" } ], "1.1.1": [ { "comment_text": "", "digests": { "md5": "370a8def97252525d34232de835dc095", "sha256": "20f5d2d0e158f09c8be17b7ecb1a9ad392eb8e23cb6cf6ea344e0c3aad5a5e3b" }, "downloads": -1, "filename": "shogen2-1.1.1.tar.gz", "has_sig": false, "md5_digest": "370a8def97252525d34232de835dc095", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 6866, "upload_time": "2014-03-06T12:02:41", "url": "https://files.pythonhosted.org/packages/14/e3/f6201b239219ce6122200504e04c2243016b9cc54949edf713f58050bf27/shogen2-1.1.1.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "370a8def97252525d34232de835dc095", "sha256": "20f5d2d0e158f09c8be17b7ecb1a9ad392eb8e23cb6cf6ea344e0c3aad5a5e3b" }, "downloads": -1, "filename": "shogen2-1.1.1.tar.gz", "has_sig": false, "md5_digest": "370a8def97252525d34232de835dc095", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 6866, "upload_time": "2014-03-06T12:02:41", "url": "https://files.pythonhosted.org/packages/14/e3/f6201b239219ce6122200504e04c2243016b9cc54949edf713f58050bf27/shogen2-1.1.1.tar.gz" } ] }