{ "info": { "author": "Sven Thiele", "author_email": "sthiele78@gmail.com", "bugtrack_url": null, "classifiers": [], "description": "Installation\r\n------------\r\n\r\nYou can install shogen by running::\r\n \r\n\t$ pip install --user shogen\r\n\r\nOn Linux the executable script can then be found in ``~/.local/bin``\r\n\r\nand on MacOS the script is under ``/Users/YOURUSERNAME/Library/Python/2.7/bin``.\r\n \r\nUsage\r\n-----\r\n \r\nTypical usage is::\r\n\r\n\t$ shogen.py [options] genomefile metabolismfile catalysationfile queries\r\n \r\n\tOptions:\r\n\t -h, --help show this help message and exit\r\n\t -k K, --k=K Number of ranked shortest genome segments (Default to 5)\r\n\t -l L, --l=L maximum length of a genome segment (Default to 200)\r\n \r\n \r\nSamples\r\n-------\r\n \r\nSample files for finding functional gene units in e. coli are available here:\r\n genome.txt_ metabolism.txt_ catalyze.txt_ queries.txt_\r\n \r\n .. _genome.txt: 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