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        "author": "David Steinberg",
        "author_email": "davidcs@ucsc.edu",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 3 - Alpha",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: Apache Software License",
            "Natural Language :: English",
            "Programming Language :: Python :: 2.7",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
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        "description": "sheepdog-exporter \ud83d\udc11\ud83d\udc11\n====================\n\nExport metadata from the DCP!\n\nFirst, download your credentials from the DCP Web interface.\n\nThen, install sheepdog exporter: ``pip install sheepdog-exporter``.\n\nYou can now find programs to export using: ``sheepdog-exporter``!\n\nOnce you've found a program and project you want to export, use:\n``sheepdog-exporter my_program my_project``. This will create a JSON\nfile in the current directory with all of the relevant metadata!\n\nYou can change the output path, path to your credentials, or the DCP URL\nusing arguments:\n\n::\n\n    sheepdog-exporter program project --dcp-url my-url --credentials path/to/credentials --output-path /path/to/write/output\n\nThe resulting JSON has the form:\n\n::\n\n    {\n      \"data_objects\": [{DataObject},...],\n      \"metadata\": {\n            metadata_type: [{metadata_value}], ...\n      }\n    }\n\nMetadata types that are expected to have files associated with them will\nhave an ``object_id`` that matches an ``object_id`` in the data object\nmanifest.\n\nDevelopment\n-----------\n\n-  A simple test demonstrates usage of the Exporter class in ``test``.\n\nUsing the Python API\n~~~~~~~~~~~~~~~~~~~~\n\nThe exporter is available for reuse from your Python code, instantiate\nit with the location of the credentials.json and the location of the DCP\ninstance you would like to export from:\n\n::\n\n    from sheepdog_exporter import Exporter\n    exporter = Exporter('path/to/credentials', 'https://dcp.bionimbus.org')\n    my_export = exporter.export('topmed', 'public')\n\nOther convenience methods are available for listing programs and\nprojects: ``.get_projects()`` and ``.get_programs()``.\n\nSee `sheepdog\\_exporter.py <sheepdog_exporter.py>`__ for more.\n\nReleases\n~~~~~~~~\n\nReleases are made on the creation of a new tag. Versioning follows\nsemantic versioning practices. Any breaking changes to the API should\nresult in a change in the major version.\n\nTo change the release maintainer, edit the ``travis.yml`` to remove the\npypi release details. Then follow the directions on `encrypting your\nPyPi credentials using Travis\nCLI <https://docs.travis-ci.com/user/deployment/pypi/>`__.\n\nIssues\n------\n\n-  Provenance to the original JSON schemas are lost. #9\n-  It has not been tested if JSON dumps can be used as sheepdog input.\n-  Some functions in the exporter are unused.\n-  Print messages cannot be easily suppressed. #12\n-  Errors in converting data from DCP are not always relayed properly to\n   the CLI. #11",
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        "keywords": "genomics,metadata,NIHDataCommons",
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