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    "info": {
        "author": "Philippe Bordron",
        "author_email": "",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)",
            "Operating System :: Unix",
            "Programming Language :: Python :: 2.7",
            "Topic :: Software Development :: Libraries :: Python Modules"
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        "description": "============\nsgs-utils\n============\n\nsgs-utils is a collection of python libraries that allows to manipulate SGS related files, especially the input and output of `shogen <https://bioasp.github.io/shogen/>`_.\n\nRequirement\n-----------\n\n* a compatible shell (``bash`` is ok, ``dash`` is not)\n* ``awk``, ``sort``\n* ``libsbml``\n* ``python 2.7`` (optional: ``pip``)\n    + ``sgs-utils``\n        - ``python-libsbml`` (``\u2265 5.12.0``)\n        - ``networkx``\n    + ``shogen``\n        - ``pyasp`` (``= 1.3.x``, the python 2.7 branch of pyasp)\n\n\nHow to install\n--------------\n\nWhen installing ``sgs-utils``, all needed python depencies will be automatically installed.\n\n\nWarning\n'''''''\n\nIf you have already installed a version of ``pyasp`` somewhere in your system (system wide, user wide or virtualenv installation) and you when to install sgs-utils (and shogen) elsewhere, the ``setup.py`` script may not download and install the ``clasp`` and ``gringo`` binaries in the new installation.\nThis problem is related to the way setuptools and pip manage the installation cache. There is no automatic workaround.\n\nYou can check that ``clasp`` and ``gringo`` binaries are installed by looking if they exist in the ``pyasp`` binary directory which is something like ``${PYTHONPATH}/lib/python2.7/site-packages/pyasp-1.3.x-py2.7.egg/pyasp/bin/``.\n\nA solution to solve this issue is to reinstall pyasp with the ``--no-cache-dir`` option that force pip and setuptools to ignore the cache.\n\n.. code-block:: bash\n\n    pip install pyasp==1.3.3 --user --ignore-installed --no-cache-dir\n\nAlternatively, you can compile ``clasp`` and ``gringo3`` or download their binaries from `here <http://www.cs.uni-potsdam.de/~sthiele/bioasp/downloads/bin/>`_ and copy/link them respectively as ``clasp`` and ``gringo`` files in the pyasp binary directory.\n\nInstall with pip\n''''''''''''''''\n\n.. code-block:: bash\n\n    pip install --user sgs-utils\n\n\nManual install\n''''''''''''''\n\nDownload ``sgs-utils-x.yz.tar.gz`` From the `pypi website <https://pypi.python.org/pypi/sgs-utils>`_ and then do the following commands.\n\n.. code-block:: bash\n\n    tar xvf sgs-utils-x.yz.tar.gz\n    cd sgs-utils-x.yz\n    python setup.py --user install\n    cd ..\n    rm -r sgs-utils-x.yz\n\n\nAcknowledgement\n---------------\n\nThis work was supported by grants Fondap 15090007, Basal program PFB-03 CMM, IntegrativeBioChile INRIA Assoc. Team, ANR-10-BLANC-0218 and CIRIC-INRIA Chile (line Natural Resources).",
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        "keywords": "bioinformatics shogen SGS",
        "license": "LGPL",
        "maintainer": "",
        "maintainer_email": "",
        "name": "sgs-utils",
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