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        "author": "Guanliang MENG",
        "author_email": "mengguanliang@foxmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 3 - Alpha",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
            "Operating System :: POSIX :: Linux",
            "Programming Language :: Python :: 3",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "# sgejob\n\n## 1 Introduction\nTo collect SGE job information with a damemon. see https://github.com/linzhi2013/sgejob\n\n## 2 Installation\n\nMake sure your `pip` is from Python3\n\n    $ pip install sgejob\n\nThere will be a command `sgejob_daemon` created under the same directory where your `pip` command located.\n\n\nIf you want to learn more about Python3 and `pip`, please refer to `https://www.python.org/` and `https://docs.python.org/3/tutorial/venv.html?highlight=pip`.\n\n## 3 Usage\n\t\n\t$ sgejob_daemon\n\n        usage: sgejob_daemon.py [-h] [-qstat <str>] [-user <str>] [-PIDFILE <file>]\n                                [-DAEMON_LOG <file>] [-sge_infor_file <file>]\n                                [-sge_usage_file <file>] [-interval INTERVAL]\n                                {start,stop} ...\n\n        Start and stop a daemon to collect SGE job information. see https://github.com/linzhi2013/sgejob\n\n        Copyright (c) 2018 Guanliang Meng (see https://github.com/linzhi2013).\n\n        The function `daemonize()` part was copied from\n        `https://python3-cookbook.readthedocs.io/zh_CN/latest/c12/p14_launching_daemon_process_on_unix.html`,\n        which is licensed under the Apache License, Version 2.0.\n\n\n\n        positional arguments:\n          {start,stop}\n            start               start the daemon\n            stop                stop the daemon\n\n        optional arguments:\n          -h, --help            show this help message and exit\n          -qstat <str>          the qstat command to be used [qstatt]\n          -user <str>           whose SGE jobs to be collected? [mengguanliang]\n          -PIDFILE <file>       set PIDFILE path [/home/mengguanliang/sge_daemon.pid]\n          -DAEMON_LOG <file>    set DAEMON_LOG path\n                                [/home/mengguanliang/sge_daemon.log]\n          -sge_infor_file <file>\n                                set sge infor_file path\n                                [/home/mengguanliang/sge.infor_df.csv]\n          -sge_usage_file <file>\n                                set sge usage_file path\n                                [/home/mengguanliang/sge.usage_df.csv]\n          -interval INTERVAL    how often to check the SGE job status? [300]\n\n### using as a module\n\n\n      In [5]: from sgejob import UserJobs, SgeJob, record_jobs\n\n      In [6]: UserJobs?\n      Init signature: UserJobs(user=None, qstat='qstat')\n      Docstring:\n      `UserJobs` object has one attribute `jobs`, which is a dictionary, whose keys are the sge job numbers.\n\n      Then `UserJobs.jobs[job_number]` is also a dictionary, whic has following\n      keys:\n\n      ['JB_job_number', 'JAT_prio', 'JB_name', 'JB_owner', 'state',\n       'JAT_start_time', 'queue_name', 'slots']\n      File:           ~/soft/script/sgejob/source/v0.0.1/sgejob/sgejob.py\n      Type:           type\n\n      In [7]: SgeJob?\n      Init signature: SgeJob(job_number=None, qstat='qstat')\n      Docstring:\n      `SgeJob` object has two attributes: `infor` and `usage`.\n\n      `SgeJob.infor` is a dictionary, corresponding to the output content of\n      `qstat -j job_number`, where the first column is the key, the second column\n      is the value.\n\n      `SgeJob.usage` is also a dictionary, whose content is from\n      `SgeJob.infor['usage         1']`.\n\n\n      `SgeJob.infor` has following keys:\n\n      ['current_time', 'job_number', 'exec_file', 'submission_time', 'owner',\n       'uid', 'group', 'gid', 'sge_o_home', 'sge_o_log_name', 'sge_o_path',\n       'sge_o_shell', 'sge_o_workdir', 'sge_o_host', 'account', 'cwd',\n       'hard resource_list', 'mail_list', 'notify', 'job_name', 'jobshare',\n       'hard_queue_list', 'env_list', 'script_file', 'project', 'binding',\n       'job_type', 'usage         1', 'binding       1', 'scheduling info']\n\n\n      `SgeJob.usage` has following keys:\n\n      ['current_time', 'job_number', 'cpu', 'mem', 'io', 'vmem', 'maxvmem']\n      File:           ~/soft/script/sgejob/source/v0.0.1/sgejob/sgejob.py\n      Type:           type\n\n      In [8]: record_jobs?\n      Signature: record_jobs(user=None, qstat='qstat', running_only=True, infor_df_csvfile=None, usage_df_csvfile=None)\n      Docstring:\n      Collect job information and append to infor_df_csvfile and\n      usage_df_csvfile.\n\n      user=None, collect current user's jobs.\n\n      if running_only=True, it will only collect the running jobs.\n\n      return: None.\n      File:      ~/soft/script/sgejob/source/v0.0.1/sgejob/sgejob.py\n      Type:      function\n\n\n## 5 Citations\nCurrently, I have no plan to publish `sgejob`.\n\n## 6 Author\n\nGuanliang MENG.",
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