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        "author": "Jun Duan",
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        "description": "# SeqUDAS: Sequence Upload and Data Archiving System\n\n## Overview\n\nModern DNA sequencing machines generate several gigabytes (GB) of data per run. Organizing and archiving this data presents a challenge for small labs. We present a Sequence Upload and Data Archiving System (SeqUDAS) that aims to ease the task of maintaining a sequence data repository through process automation and an intuitive web interface.\n\n## Features\n\n- Automated upload and storage of sequence data to a central storage server.\n- Data validation with MD5 checksums for data integrity assurance\n- [Illumina modules](https://bitbucket.org/invitae/illuminate) are incorpated to parse metrics binaries and generate a report similar to Illumina SAV.\n- FASTQC and MultiQC workflows are included to perform QC analysis automatically.\n- A taxonomic report will be generated based on Kraken report \n- Archival information, QC results and taxonomic report can be viewed through a mobile-friendly web interface\n- Pass sequence data along to another remote server via API (IRIDA) \n\n## Architecture\n\nSeqUDAS consists of three components:\n\n- Data manager: Installed on a PC directly attached to an illumina sequencing machine.\n- Data analyzer: Installed on a server to run the data analysis jobs.\n- Web Application: Installed on a web server to provide account management and report viewing.\n\n",
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