{ "info": { "author": "Lucas Sinclair", "author_email": "lucas.sinclair@me.com", "bugtrack_url": null, "classifiers": [ "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "[![changelog](http://allmychanges.com/p/python/seqsearch/badge/)](http://allmychanges.com/p/python/seqsearch/?utm_source=badge) [![PyPI version](https://badge.fury.io/py/seqsearch.svg)](https://badge.fury.io/py/seqsearch)\n\n# `seqsearch` version 1.0.3\n\nSequence similarity searches made easy\n\n### Introduction\nYou can parallelize BLAST searches by splitting the input and submitting jobs to a SLURM cluster.\n\nThe blast jobs are run on a SLURM queue with parallelization by input chopping. Not database chopping which requires message passing across the nodes like mpiblast does (when and if it works).\nInput chopping is fine as long as the database to search against fits in the RAM of the nodes. If the input is small and the database is large you can always switch them one for the other (in most cases) and apply input splitting.\n\nFor a usage example look at the `test.py` file.\n\n### Code documentation\nMore documentation is available at:\nhttp://xapple.github.io/seqsearch/", "description_content_type": null, "docs_url": null, "download_url": "UNKNOWN", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/xapple/seqsearch", "keywords": null, "license": "MIT", "maintainer": null, "maintainer_email": null, "name": "seqsearch", "package_url": "https://pypi.org/project/seqsearch/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/seqsearch/", "project_urls": { "Download": "UNKNOWN", "Homepage": "https://github.com/xapple/seqsearch" }, "release_url": "https://pypi.org/project/seqsearch/1.0.3/", "requires_dist": null, "requires_python": null, "summary": "Sequence similarity searches made easy.", "version": "1.0.3" }, "last_serial": 2027143, "releases": { "0.0.1": [], "1.0.1": [ { "comment_text": "", "digests": { "md5": "1cc2cde3794217556b67f2e850daa811", "sha256": "5ee0bc0374bfbc83aa5ded7e65e561693a48f32a884f2711e69c2af016e50020" }, "downloads": -1, "filename": "seqsearch-1.0.1.tar.gz", "has_sig": false, "md5_digest": "1cc2cde3794217556b67f2e850daa811", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 8833, "upload_time": "2016-03-25T13:16:59", "url": "https://files.pythonhosted.org/packages/b9/86/394e50b0351bd0d7ef82cda2e6728c5b94276ed1b0f63965050591a2eb69/seqsearch-1.0.1.tar.gz" } ], "1.0.3": [ { "comment_text": "", "digests": { "md5": "a23c737d36ab337652b16329af71f44c", "sha256": "0589b39aee4c22fb4972f581705f349e61db535fa08fabc6573b3da31fd8bbee" }, "downloads": -1, "filename": "seqsearch-1.0.3.tar.gz", "has_sig": false, "md5_digest": "a23c737d36ab337652b16329af71f44c", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 8978, "upload_time": "2016-03-25T16:21:56", "url": "https://files.pythonhosted.org/packages/4d/4e/8937a47fc27123c9f1db94abdcfcc88930fddd2a037a317c0ab3366822fa/seqsearch-1.0.3.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "a23c737d36ab337652b16329af71f44c", "sha256": "0589b39aee4c22fb4972f581705f349e61db535fa08fabc6573b3da31fd8bbee" }, "downloads": -1, "filename": "seqsearch-1.0.3.tar.gz", "has_sig": false, "md5_digest": "a23c737d36ab337652b16329af71f44c", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 8978, "upload_time": "2016-03-25T16:21:56", "url": "https://files.pythonhosted.org/packages/4d/4e/8937a47fc27123c9f1db94abdcfcc88930fddd2a037a317c0ab3366822fa/seqsearch-1.0.3.tar.gz" } ] }