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        "author": "Grigory Sharov, J.M. De la Rosa Trevin",
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        "description": "=================\nMotioncorr plugin\n=================\n\nThis plugin allows to use motioncor2 program within the Scipion framework.\n\nMotioncor2 is a GPU-accelerated program for correction of electron beam-induced sample motion. It is developed by `Shawn Zheng <https://msg.ucsf.edu/software>`_.\n\n.. figure:: http://scipion-test.cnb.csic.es:9980/badges/motioncorr_devel.svg\n   :align: left\n   :alt: build status\n\nInstallation\n------------\n\nYou will need to use `2.0 <https://github.com/I2PC/scipion/releases/tag/V2.0.0>`_ version of Scipion to be able to run these protocols. To install the plugin, you have two options:\n\na) Stable version\n\n.. code-block::\n\n   scipion installp -p scipion-em-motioncorr\n\nb) Developer's version\n\n   * download repository \n   \n   .. code-block::\n   \n      git clone https://github.com/scipion-em/scipion-em-motioncorr.git\n\n   * install\n   \n   .. code-block::\n\n      scipion installp -p path_to_scipion-em-motioncorr --devel\n\nMotioncor2 binaries will be installed automatically with the plugin, but you can also link an existing installation. \nDefault installation path assumed is ``software/em/motioncor2-1.2.6``, if you want to change it, set *MOTIONCOR2_HOME* in ``scipion.conf`` file to the folder where the Motioncor2 is installed. Depending on your CUDA version you might want to change the default binary from ``MotionCor2_1.2.6-Cuda80`` to a different one by explicitly setting *MOTIONCOR2* variable. If you need to use CUDA different from the one used during Scipion installation (defined by CUDA_LIB), you can add *MOTIONCOR2_CUDA_LIB* variable to the config file. Various binaries can be downloaded from the official UCSF website.\n\nTo check the installation, simply run the following Scipion test: \n\n``scipion test motioncorr.tests.test_protocols_motioncor2.TestMotioncor2AlignMovies``\n\nSupported versions\n------------------\n\n1.1.0, 1.2.1, 1.2.3, 1.2.6\n\nProtocols\n---------\n\n* movie alignment\n\nReferences\n----------\n\n1.  Shawn Q Zheng, Eugene Palovcak, Jean-Paul Armache, Kliment A Verba, Yifan Cheng & David A Agard. MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Nature Methods volume 14, pages 331\u2013332 (2017).",
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        "name": "scipion-em-motioncorr",
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