{
"info": {
"author": "Grigory Sharov, J.M. De la Rosa Trevin",
"author_email": "sharov.grigory@gmail.com, delarosatrevin@scilifelab.se",
"bugtrack_url": null,
"classifiers": [
"Development Status :: 4 - Beta",
"License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
"Programming Language :: Python :: 2.7"
],
"description": "===========\nGctf plugin\n===========\n\nThis plugin provide wrappers around `Gctf `_ program.\n\n.. figure:: http://scipion-test.cnb.csic.es:9980/badges/gctf_devel.svg\n :align: left\n :alt: build status\n\nInstallation\n------------\n\nYou will need to use `2.0 `_ version of Scipion to be able to run these protocols. To install the plugin, you have two options:\n\na) Stable version\n\n .. code-block::\n\n scipion installp -p scipion-em-gctf\n\nb) Developer's version\n\n * download repository\n\n .. code-block::\n\n git clone https://github.com/scipion-em/scipion-em-gctf.git\n\n * install\n\n .. code-block::\n\n scipion installp -p path_to_scipion-em-gctf --devel\n\nGctf binaries will be installed automatically with the plugin, but you can also link an existing installation. \nDefault installation path assumed is ``software/em/gctf-1.18``, if you want to change it, set *GCTF_HOME* in ``scipion.conf`` file to the folder where the Gctf is installed. Depending on your CUDA version and GPU card compute capability you might want to change the default binary from ``Gctf_v1.18_b2_sm60_cu8.0`` to a different one by explicitly setting *GCTF* variable. If you need to use CUDA different from the one used during Scipion installation (defined by CUDA_LIB), you can add *GCTF_CUDA_LIB* variable to the config file. Various binaries can be downloaded from the official Gctf website.\n\nTo check the installation, simply run one of the following Scipion tests: \n\n.. code-block::\n\n scipion test gctf.tests.test_protocols_gctf.TestGctfRefine\n scipion test gctf.tests.test_protocols_gctf.TestGctf\n\nSupported versions\n------------------\n\n1.06 and 1.18.\n\n1.18 is a special version designed for VPP data, it does not support local/movie CTF refinement or validation options. \n\nProtocols\n---------\n\n* ctf estimation\n* ctf refinement\n\nReferences\n----------\n\n1. Zhang K. (2016). Gctf: Real-time CTF determination and correction. JSB, 193: 1-12.",
"description_content_type": "",
"docs_url": null,
"download_url": "",
"downloads": {
"last_day": -1,
"last_month": -1,
"last_week": -1
},
"home_page": "https://github.com/scipion-em/scipion-em-gctf",
"keywords": "scipion electron-microscopy cryo-em structural-biology image-processing scipion-2.0",
"license": "",
"maintainer": "",
"maintainer_email": "",
"name": "scipion-em-gctf",
"package_url": "https://pypi.org/project/scipion-em-gctf/",
"platform": "",
"project_url": "https://pypi.org/project/scipion-em-gctf/",
"project_urls": {
"Homepage": "https://github.com/scipion-em/scipion-em-gctf"
},
"release_url": "https://pypi.org/project/scipion-em-gctf/1.0.7/",
"requires_dist": null,
"requires_python": "",
"summary": "Plugin to use Gctf program within the Scipion framework",
"version": "1.0.7"
},
"last_serial": 5624266,
"releases": {
"1.0.0": [
{
"comment_text": "scipion-2.0",
"digests": {
"md5": "22192251b0af28137d95b3f3d149070b",
"sha256": "d0ae41b30dd3a0f588b711eac17ff78fc08953a1665b191295cdd19c9ace59c6"
},
"downloads": -1,
"filename": "scipion-em-gctf-1.0.0.tar.gz",
"has_sig": false,
"md5_digest": "22192251b0af28137d95b3f3d149070b",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 33954,
"upload_time": "2018-10-13T21:41:46",
"url": "https://files.pythonhosted.org/packages/4e/74/1bb6fbe55ed7bcf39ffa3cac3bfd141961416b43336051e61d72b23aa24c/scipion-em-gctf-1.0.0.tar.gz"
}
],
"1.0.1": [
{
"comment_text": "scipion-2.0",
"digests": {
"md5": "5b905ae0ffdd510cb6f13130f9a654d5",
"sha256": "b69f333ec5118fe017c6d1e873e3e4196a1aff3deed698a64707184e0431862a"
},
"downloads": -1,
"filename": "scipion-em-gctf-1.0.1.tar.gz",
"has_sig": false,
"md5_digest": "5b905ae0ffdd510cb6f13130f9a654d5",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 33945,
"upload_time": "2018-10-14T21:52:37",
"url": "https://files.pythonhosted.org/packages/86/41/ddbea4804217d0a08622a2324f51a3271bc80a4a733450c28c5df3552116/scipion-em-gctf-1.0.1.tar.gz"
}
],
"1.0.2": [
{
"comment_text": "scipion-2.0",
"digests": {
"md5": "7709e7df00bd646126cf4b7114949d65",
"sha256": "41c96b05da03fa2fdb15b17c2f7ea45df19c91b8ec06a5a0596ca83e0135db2d"
},
"downloads": -1,
"filename": "scipion-em-gctf-1.0.2.tar.gz",
"has_sig": false,
"md5_digest": "7709e7df00bd646126cf4b7114949d65",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 33882,
"upload_time": "2018-10-21T11:15:32",
"url": "https://files.pythonhosted.org/packages/61/72/fdc00d417e0ba405c6b9cd3670991ec840616bb5070353756c2dea7d3ebf/scipion-em-gctf-1.0.2.tar.gz"
}
],
"1.0.3": [
{
"comment_text": "scipion-1.2",
"digests": {
"md5": "1a7702e725ae7be8650284cfd9ef32a0",
"sha256": "03b79e2973bbf976ea0da635058c8700e03bfa66b607a30a69f060714dcebda1"
},
"downloads": -1,
"filename": "scipion-em-gctf-1.0.3.tar.gz",
"has_sig": false,
"md5_digest": "1a7702e725ae7be8650284cfd9ef32a0",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 34906,
"upload_time": "2019-02-10T16:31:56",
"url": "https://files.pythonhosted.org/packages/23/4b/ea02010e88782405ed79513b0c1bc684dccdea2e8094bdb41aa49a356b97/scipion-em-gctf-1.0.3.tar.gz"
}
],
"1.0.4": [
{
"comment_text": "scipion-1.2",
"digests": {
"md5": "cf51130651aff70824c2f5656888a568",
"sha256": "d35528b189eb0d73d18d3c07c99ab4ad53e58faaa6f4a525ce5b63aa47738ca2"
},
"downloads": -1,
"filename": "scipion-em-gctf-1.0.4.tar.gz",
"has_sig": false,
"md5_digest": "cf51130651aff70824c2f5656888a568",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 35090,
"upload_time": "2019-03-01T10:23:11",
"url": "https://files.pythonhosted.org/packages/fc/7d/03ef41ec19607b2f8d657086fe4cf19cad3ac08abde8dd86b0cde3ea71e2/scipion-em-gctf-1.0.4.tar.gz"
}
],
"1.0.6": [
{
"comment_text": "scipion-2.0",
"digests": {
"md5": "70728563f994c85daacc1d015a25306f",
"sha256": "6ac34d852fe46834becf83626c4a50980e366ee703560399c653ee243e097fa8"
},
"downloads": -1,
"filename": "scipion-em-gctf-1.0.6.tar.gz",
"has_sig": false,
"md5_digest": "70728563f994c85daacc1d015a25306f",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 35295,
"upload_time": "2019-04-08T16:49:09",
"url": "https://files.pythonhosted.org/packages/a1/71/580005ed59949bc7e35f088755f315f873bbae70e076b1c12f3ba9feea9b/scipion-em-gctf-1.0.6.tar.gz"
}
],
"1.0.7": [
{
"comment_text": "scipion-2.0",
"digests": {
"md5": "17ebeda7a071f3305acf42d739ff33d0",
"sha256": "81057fc01068c57a7398affdb895f7f8045518eaf13eb9438d6dc66b6a3a5f4c"
},
"downloads": -1,
"filename": "scipion-em-gctf-1.0.7.tar.gz",
"has_sig": false,
"md5_digest": "17ebeda7a071f3305acf42d739ff33d0",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 36864,
"upload_time": "2019-08-02T13:34:47",
"url": "https://files.pythonhosted.org/packages/81/95/943790ed8333648ee60bd9629d100e499d96fc3f6a1ec18a54c63f54de72/scipion-em-gctf-1.0.7.tar.gz"
}
]
},
"urls": [
{
"comment_text": "scipion-2.0",
"digests": {
"md5": "17ebeda7a071f3305acf42d739ff33d0",
"sha256": "81057fc01068c57a7398affdb895f7f8045518eaf13eb9438d6dc66b6a3a5f4c"
},
"downloads": -1,
"filename": "scipion-em-gctf-1.0.7.tar.gz",
"has_sig": false,
"md5_digest": "17ebeda7a071f3305acf42d739ff33d0",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 36864,
"upload_time": "2019-08-02T13:34:47",
"url": "https://files.pythonhosted.org/packages/81/95/943790ed8333648ee60bd9629d100e499d96fc3f6a1ec18a54c63f54de72/scipion-em-gctf-1.0.7.tar.gz"
}
]
}