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"author": "Grigory Sharov",
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"description": "=============\nCryoef plugin\n=============\n\nThis plugin provide a wrapper around `cryoEF `_ program.\n\n.. figure:: http://scipion-test.cnb.csic.es:9980/badges/cryoef_devel.svg\n :align: left\n :alt: build status\n\nInstallation\n------------\n\nYou will need to use `2.0 `_ version of Scipion to be able to run these protocols. To install the plugin, you have two options:\n\na) Stable version\n\n.. code-block::\n\n scipion installp -p scipion-em-cryoef\n\nb) Developer's version\n\n * download repository\n\n .. code-block::\n\n git clone https://github.com/scipion-em/scipion-em-cryoef.git\n\n * install\n\n .. code-block::\n\n scipion installp -p path_to_scipion-em-cryoef --devel\n\nCryoEF binaries will be installed automatically with the plugin, but you can also link an existing installation. \nDefault installation path assumed is ``software/em/cryoEF-1.1.0``, if you want to change it, set *CRYOEF_HOME* in `scipion.conf`` file to the folder where the cryoEF is installed. To check the installation, simply run the following Scipion test:\n\n``scipion test cryoef.tests.test_protocols_cryoef.TestCryoEF``\n\nSupported versions\n------------------\n\n1.1.0\n\nProtocols\n---------\n\n * orientation analysis\n\nDetailed manual can be found in ``software/em/cryoEF-1.1.0/cryoEF_v1.1.0_manual.pdf``\n\nReferences\n----------\n\n * `1. Naydenova, K and Russo, CJ \"Measuring the effects of particle orientation to improve the efficiency of electron cryomicroscopy\" Nature Communications (2017). `_",
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