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"description": "================================\nChimera scipion plugin\n================================\n\nThis plugin allows to use chimera commands within the Scipion framework.\n\nChimera is a program for interactive visualization and analysis of molecular structures and related data. It is developed by the Resource for Biocomputing, Visualization, and Informatics (see `Chimera home page `_ for details).\n\n\n===================\nInstall this plugin\n===================\n\nYou will need to use `2.0.0 `_ version of Scipion to run these protocols. To install the plugin, you have two options:\n\n- **Stable version** \n\n.. code-block:: \n\n scipion installp -p scipion-em-chimera\n \nOR\n\n - through the plugin manager GUI by launching Scipion and following **Configuration** >> **Plugins**\n \n- **Developer's version** \n\n1. Download repository: \n\n.. code-block::\n\n git clone https://github.com/scipion-em/scipion-em-chimera.git\n\n2. Install:\n\n.. code-block::\n\n scipion installp -p path_to_scipion-em-chimera --devel\n\n- **Binary files** \n\nChimera binaries will be installed automatically with the plugin, but you can also link an existing installation. \nDefault installation path assumed is *software/em/chimera-1.13.1*, if you want to change it, set *CHIMERA_HOME* in *scipion.conf* file to the folder where Chimera is installed.\n\n- **Tests**\n\nTested with Chimera version: 1.13.1.\n\nTo check the installation, simply run the following Scipion tests: \n\n* scipion test chimera.tests.test_protocol_chimera_operate\n* scipion test chimera.tests.test_protocol_chimera_fit\n* scipion test chimera.tests.test_protocol_modeller_search\n* scipion test chimera.tests.test_protocol_contact\n\n- **Supported versions of Chimera**\n\n1.13.1\n\n\n=========\nProtocols\n=========\n\n* rigit fit: Fits an atomic structure (PDB/CIF) to a 3D map using a rigid fit algorithm.\n* model from template: Models three-dimensional structures of proteins using `Modeller `_.\n* contacts: Identifies interatomic `clashes and contacts `_ based on van der Waals radii. \n* operate: Provides access to Chimera and allows to save the result in Scipion framework.\n* restore: This protocol opens Chimera and restores the session previously saved with commands *scipionwrite* or *scipionss*. \n\n\n========\nExamples\n========\n\nSee `Model Building Tutorial `_\n\n\n===============\nBuildbot status\n===============\n\nStatus devel version: \n\n.. image:: http://scipion-test.cnb.csic.es:9980/badges/chimera_devel.svg\n\nStatus production version: \n\n.. image:: http://scipion-test.cnb.csic.es:9980/badges/chimera_prod.svg",
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