{ "info": { "author": "I2PC, Roberto Marabini and Marta Martinez", "author_email": "scipion@cnb.csic.es", "bugtrack_url": null, "classifiers": [], "description": "===================\nCCP4 scipion plugin\n===================\n\nThis plugin allows to use CCP4 programs within the Scipion framework.\n\nCCP4, from Collaborative Computational Project Number 4, is a software suite that allows model building of macromolecule structures obtained by X-ray crystallography, and that has been extended to other techniques like cryo-EM (see `CCP4 home page `_ for details).\n\nPrograms from CCP4 included in the Scipion framework for model building:\n\n * coot\n * refmac\n\n===================\nInstall this plugin\n===================\n\nYou will need to use `2.0.0 `_ version of Scipion to run these protocols. To install the plugin, you have two options:\n\n- **Stable version** \n\n.. code-block:: \n\n scipion installp -p scipion-em-ccp4\n \nOR\n\n - through the plugin manager GUI by launching Scipion and following **Configuration** >> **Plugins**\n \n- **Developer's version** \n\n1. Download repository: \n\n.. code-block::\n\n git clone https://github.com/scipion-em/scipion-em-ccp4.git\n\n2. Install:\n\n.. code-block::\n\n scipion installp -p path_to_scipion-em-ccp4 --devel\n\n\n\n- **Binary files** \n\nCCP4 binaries will *NOT* be installed automatically with the plugin. The independent installation of CCP4 software suite by the user is required before running the programs. Default installation path assumed is */usr/local/ccp4-7.0*; this path or any other of your preference has to be set in *CCP4_HOME* in *scipion.conf*. We recommend to install CCP4 version 7.0.056 or higher.\n\n\n\n- **Tests**\n\nTested with CCP4 versions: 7.0.056 and 7.0.066.\n\nTo check the installation, simply run the following Scipion test: \n\n* scipion test ccp4.tests.test_protocol_coot_refmac\n\n\n\n- **Supported versions of CCP4**\n\n7.0.056 or higher.\n\n- **Additional Instruction**\n\nsee https://github.com/scipion-em/scipion-em-ccp4/wiki\n\n=========\nProtocols\n=========\n\n* coot refinement: Molecular interactive graphics application used for flexible fitting, refinement, model completion, and validation of structures of macromolecules regarding electron density maps. See the `details `_ of *Coot* utilities. \n* refmac: Automatic refinement program in Fourier space of macromolecule structures regarding electron density maps. See ` `_ of *Refmac* utilities.\n\n\n\n\n========\nExamples\n========\n\nSee `Model Building Tutorial `_\n\n\n\n\n===============\nBuildbot status\n===============\n\nStatus devel version: \n\n.. image:: http://scipion-test.cnb.csic.es:9980/badges/ccp4_devel.svg\n\nStatus production version: \n\n.. image:: http://scipion-test.cnb.csic.es:9980/badges/ccp4_prod.svg", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/scipion-em/scipion-em-ccp4", "keywords": "scipion cryoem imageprocessing scipion-2.0", "license": "", "maintainer": "", "maintainer_email": "", "name": "scipion-em-ccp4", "package_url": "https://pypi.org/project/scipion-em-ccp4/", "platform": "", "project_url": "https://pypi.org/project/scipion-em-ccp4/", "project_urls": { "Homepage": "https://github.com/scipion-em/scipion-em-ccp4" }, "release_url": "https://pypi.org/project/scipion-em-ccp4/1.0.12/", "requires_dist": null, "requires_python": "", "summary": "CCP4 model building programs in Scipion. Warning: Install CCP4 v. 7.0.56 or higher", "version": "1.0.12" }, "last_serial": 5588792, "releases": { "1.0.0": [ { "comment_text": "scipion-1.2", "digests": { "md5": "a7199518c3d54b64a9eaf86a35cbbe9a", "sha256": "324b3cb2251fe369e213e3801bd9126d599b5a23096c7f55ea824b278125b9be" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.0.tar.gz", "has_sig": false, "md5_digest": "a7199518c3d54b64a9eaf86a35cbbe9a", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 36090, "upload_time": "2018-12-12T08:40:09", "url": "https://files.pythonhosted.org/packages/12/90/b0a825559f8e072c8e32bee64b9139db985c7c78f9c62c535d92e781878b/scipion-em-ccp4-1.0.0.tar.gz" } ], "1.0.1": [ { "comment_text": "scipion-1.2", "digests": { "md5": "2da63aa857fdc7cef7b577f0622c367d", "sha256": "5b190eeafcb449540fe4e691d4e9221d3f505a1cd58247e855acdb28efcd7290" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.1.tar.gz", "has_sig": false, "md5_digest": "2da63aa857fdc7cef7b577f0622c367d", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 36215, "upload_time": "2019-02-20T13:54:52", "url": "https://files.pythonhosted.org/packages/82/f8/e08963dabdfb9bc3c99e907e0887943644f40b15aee229c901e5aafbc07c/scipion-em-ccp4-1.0.1.tar.gz" } ], "1.0.10": [ { "comment_text": "scipion-2.0", "digests": { "md5": "1b96a7276d4eb7837437cb4a1bdfb9f6", "sha256": "63460ea23d3c8f1c6d21a998f554ba6b1ca69fefcb6de047ac879ea6abe048a1" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.10.tar.gz", "has_sig": false, "md5_digest": "1b96a7276d4eb7837437cb4a1bdfb9f6", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 52346, "upload_time": "2019-07-22T14:09:15", "url": "https://files.pythonhosted.org/packages/bf/fe/1442814623cacef66227612cfe37bd55052c42f5014ceb58aded2716aa8c/scipion-em-ccp4-1.0.10.tar.gz" } ], "1.0.11": [ { "comment_text": "scipion-2.0", "digests": { "md5": "235cccd1b531d7ca12aa2916ead4cf38", "sha256": "9cff9e4892d17b54e2d79d9a64d7066e55776c5712cac93d0a1adaa1c33fd1f6" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.11.tar.gz", "has_sig": false, "md5_digest": "235cccd1b531d7ca12aa2916ead4cf38", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 52337, "upload_time": "2019-07-22T14:38:10", "url": "https://files.pythonhosted.org/packages/e0/9f/a51b82bbd0818b49abadf0293cd868142a8b618975873303f6985dfb2dfe/scipion-em-ccp4-1.0.11.tar.gz" } ], "1.0.12": [ { "comment_text": "scipion-2.0", "digests": { "md5": "7aa5ac23d7175e346271d67680a97079", "sha256": "a87419e9381422a8f0ed449a9cbd1d87fdfe2b98898a964a2987306fc4b4bf94" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.12.tar.gz", "has_sig": false, "md5_digest": "7aa5ac23d7175e346271d67680a97079", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 52373, "upload_time": "2019-07-26T12:22:35", "url": "https://files.pythonhosted.org/packages/0d/af/f1408d203e8f80859df58683e9574bf98b9c3098782f74f1b20157df5e8b/scipion-em-ccp4-1.0.12.tar.gz" } ], "1.0.1b0": [ { "comment_text": "scipion-1.2", "digests": { "md5": "3d0585ef9194afd7818b0fc4bcaf0ef4", "sha256": "27b63d11c49daf60bb0a87291e78fd3b3875880b8bfed413fdbe0169125cc4a8" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.1b0.tar.gz", "has_sig": false, "md5_digest": "3d0585ef9194afd7818b0fc4bcaf0ef4", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 48734, "upload_time": "2019-03-01T09:41:19", "url": "https://files.pythonhosted.org/packages/92/43/bf977724d49638656b8ed95d5971a680908ee9605e7bfb0dac5a29746e86/scipion-em-ccp4-1.0.1b0.tar.gz" } ], "1.0.2": [ { "comment_text": "scipion-1.2", "digests": { "md5": "8f9bca0d900087e323b06a2ba3d4e07f", "sha256": "41bd382c356a72ff9e94a5c43691609e5589403a64d5e2e4b654f2363e3292bf" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.2.tar.gz", "has_sig": false, "md5_digest": "8f9bca0d900087e323b06a2ba3d4e07f", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 48738, "upload_time": "2019-03-01T09:43:44", "url": "https://files.pythonhosted.org/packages/d4/c9/1d80ec1d8c62fa7f5462c1bac5f7fb8b642bcd9835420540b04a2352084a/scipion-em-ccp4-1.0.2.tar.gz" } ], "1.0.3": [ { "comment_text": "scipion-2.0.0", "digests": { "md5": "f8ed00493e98215b88c2d0d7684b84d7", "sha256": "e4ac57eec07adc08a56cf062edf5efb677cbb9523f95c6d4958199a280ed1373" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.3.tar.gz", "has_sig": false, "md5_digest": "f8ed00493e98215b88c2d0d7684b84d7", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 50000, "upload_time": "2019-03-07T11:48:41", "url": "https://files.pythonhosted.org/packages/09/9c/92c9cebbd9f9c88636d4eec59a093356f17d67f3801d9f3cec9eff051b47/scipion-em-ccp4-1.0.3.tar.gz" } ], "1.0.3b0": [ { "comment_text": "scipion-2.0.0", "digests": { "md5": "bd2cbb0ca8aa9b570f69143104f82a51", "sha256": "c71a8c7707fe833c350aaca4848100b68124d27956abcf0de4eea2e47af9238c" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.3b0.tar.gz", "has_sig": false, "md5_digest": "bd2cbb0ca8aa9b570f69143104f82a51", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 50438, "upload_time": "2019-04-12T10:26:55", "url": "https://files.pythonhosted.org/packages/9e/0d/1ddc11fe43efbb002719c337ea7c5079c0cae7b73e92feb4e7a438daeb5d/scipion-em-ccp4-1.0.3b0.tar.gz" } ], "1.0.4b0": [ { "comment_text": "scipion-2.0.0", "digests": { "md5": "ea16d6f2f85886a5e7e0445fea1aa559", "sha256": "58b4610a936196d482b937034acccc54f568e7e65969174d5d9ffb3f3913431c" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.4b0.tar.gz", "has_sig": false, "md5_digest": "ea16d6f2f85886a5e7e0445fea1aa559", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 50441, "upload_time": "2019-04-12T10:30:37", "url": "https://files.pythonhosted.org/packages/ae/4a/d2f61cca7152cb110c47f9b37e1ded772143a86a0ccb7d1f0fe03bb1b3bd/scipion-em-ccp4-1.0.4b0.tar.gz" } ], "1.0.5b0": [ { "comment_text": "scipion-2.0.0", "digests": { "md5": "e746a2e50de5dc7397830a8273a25a95", "sha256": "81874e9b2454b857a3f7f63f8701d2bec762b8d1031aedeaeca43aac9946a480" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.5b0.tar.gz", "has_sig": false, "md5_digest": "e746a2e50de5dc7397830a8273a25a95", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 50443, "upload_time": "2019-04-12T10:36:08", "url": "https://files.pythonhosted.org/packages/74/b5/8190c3c1470adb3e82d19f5511cf85abbc85f2bbbd2517dfb7b6e933e75b/scipion-em-ccp4-1.0.5b0.tar.gz" } ], "1.0.6": [ { "comment_text": "scipion-2.0.0", "digests": { "md5": "7af032ab5ad752e5fa5acb731c6c024d", "sha256": "28b60cdb3b55114ee4358a5223f1b799319f1f236395b6fdce70a3b2cfcfec90" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.6.tar.gz", "has_sig": false, "md5_digest": "7af032ab5ad752e5fa5acb731c6c024d", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 50437, "upload_time": "2019-04-12T10:50:59", "url": "https://files.pythonhosted.org/packages/22/ca/bb79ce272306c1b60e342501590bdb0729de371fc8e65f55b6153875a518/scipion-em-ccp4-1.0.6.tar.gz" } ], "1.0.6b0": [ { "comment_text": "scipion-2.0.0", "digests": { "md5": "a43d2295fd0bac4f5e42d45bcb47a0f3", "sha256": "e62f81894d778821ba520b72b3bdd2a142fc3515b962a3997ab3bffa3ffccd13" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.6b0.tar.gz", "has_sig": false, "md5_digest": "a43d2295fd0bac4f5e42d45bcb47a0f3", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 50441, "upload_time": "2019-04-12T10:40:54", "url": "https://files.pythonhosted.org/packages/72/94/0b022ae6d4944d916d0cf2da65b607673cc1441729949910fd4ea23fe5c5/scipion-em-ccp4-1.0.6b0.tar.gz" } ], "1.0.7": [ { "comment_text": "scipion-2.0.0", "digests": { "md5": "6c323956ca73682d986c7fc6b1d8b6ef", "sha256": "3c79b347e4dd73f9b7b64131ad1f11498d7549f8638a57c7396df12661956a54" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.7.tar.gz", "has_sig": false, "md5_digest": "6c323956ca73682d986c7fc6b1d8b6ef", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 52098, "upload_time": "2019-04-15T10:18:38", "url": "https://files.pythonhosted.org/packages/c6/ac/0804c8e703ab8fcf2aa33690140d6910026eb79401e98cc93d911f890366/scipion-em-ccp4-1.0.7.tar.gz" } ], "1.0.8": [ { "comment_text": "scipion-2.0.0", "digests": { "md5": "c9589a2b41eab7fdb84264b865fcce29", "sha256": "7dd66c7b522fb748c0da31f5a258f68c5ee49e6b6cb16507aaaf3d39d25a7dd6" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.8.tar.gz", "has_sig": false, "md5_digest": "c9589a2b41eab7fdb84264b865fcce29", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 52176, "upload_time": "2019-04-15T13:27:04", "url": "https://files.pythonhosted.org/packages/b2/05/69694ace7353aa7e112769f615daf37475b2e76de563fcdd8d2b50dd6dde/scipion-em-ccp4-1.0.8.tar.gz" } ], "1.0.9": [ { "comment_text": "scipion-2.0.0", "digests": { "md5": "681586b567e3a33fbeb3beb1e9e539ca", "sha256": "a2c44084c3957bae52fb8f5903bac8fe227a408ee95755ab8e1f4965b7b03505" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.9.tar.gz", "has_sig": false, "md5_digest": "681586b567e3a33fbeb3beb1e9e539ca", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 52207, "upload_time": "2019-04-15T13:37:59", "url": "https://files.pythonhosted.org/packages/54/04/1a8b94da5a853f4655f167a07ff29d653bfb463f4ce789a678755c66c20b/scipion-em-ccp4-1.0.9.tar.gz" } ] }, "urls": [ { "comment_text": "scipion-2.0", "digests": { "md5": "7aa5ac23d7175e346271d67680a97079", "sha256": "a87419e9381422a8f0ed449a9cbd1d87fdfe2b98898a964a2987306fc4b4bf94" }, "downloads": -1, "filename": "scipion-em-ccp4-1.0.12.tar.gz", "has_sig": false, "md5_digest": "7aa5ac23d7175e346271d67680a97079", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 52373, "upload_time": "2019-07-26T12:22:35", "url": "https://files.pythonhosted.org/packages/0d/af/f1408d203e8f80859df58683e9574bf98b9c3098782f74f1b20157df5e8b/scipion-em-ccp4-1.0.12.tar.gz" } ] }