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        "description": "# Roboy ScientIO\n\n## About\n\nRoboy ScientIO (from Lat. scientia - knowledge and Input/Output) - a Knowledge Graph Engine to organise and query complex data.\n\n## Dependencies\n\nTo use ScientIO, you will need to have one of it's supported back-ends installed. Currently, the only supported back-end is Neo4j, which may be run in a number of ways\n(if you don't have a remote instance available). We recommend simply running it through docker - like this:\n\n```bash\ndocker run \\\n    --publish=7474:7474 --publish=7687:7687 \\\n    --volume=$HOME/neo4j/data:/data \\\n    --volume=$HOME/neo4j/logs:/logs \\\n    neo4j:3.0\n```\n\n## Installation\n\n### Via PIP\n\nThe easiest way to install ScientIO is through pip:\n\n``\npip install scientio\n``\n\n### For developers\n\nFirst, install dependencies:\n\n```bash\npip install -r requirements.txt\n```\n\nThen, you may open the repository in any IDE, and mark the\n`src` folder as a sources root.\n\n## Basic ScientIO use-cases\n\n### Supplying an ontology description\n\nThe ontology description is a collection of named entity types, where each type may declare a specific set of properties and relationships like this:\n\n```yaml\n# my_ontology.yml\n\n!OType\nentity: Alien    # The name of the ontology type\n---\n!OType\nentity: Vulcan   # Declare a more specific Alien type\nmeta: [Alien]\nproperties:      # Allowed properties for every Vulcan\n - name\n - homeworld\n - ear_pointiness\n---\n!OType\nentity: Human    # Declare a more specific Alien type\nmeta: [Alien]\nproperties:      # Allowed properties for every Human\n - name\n - homeworld\nrelationships: [captain_of]  # Allowed relationships for every Human\n```\n\n### Creating some nodes\n\n```python\nfrom scientio.ontology.ontology import Ontology\nfrom scientio.session import Session\nfrom scientio.ontology.node import Node\n\n# Load the ontology from a yaml file\nonto = Ontology(path_to_yaml=\"my_ontology.yml\")\n\n# Create a session (with default Neo4j backend)\nsess = Session(\n    ontology=onto,\n    neo4j_address=\"bolt://localhost:7687\",\n    neo4j_username=\"neo4j\",\n    neo4j_password=\"test\")\n\n# Get human/vulcan types from ontology\nhuman_type = onto.get_type(\"Human\")\nvulcan_type = onto.get_type(\"Vulcan\")\n\n# Create a transient human named \"Kirk\"\nkirk = Node(metatype=human_type)\nkirk.set_name(\"Kirk\")\n\n# Create a transient vulcan named \"Spock\"\nspock = Node(metatype=vulcan_type)\nspock.set_name(\"Spock\")\n\n# Persist kirk and spock\nsess.create(kirk)\nsess.create(spock)\n```\n\n### Add a relationship between your nodes\n\n```python\nfrom scientio.ontology.ontology import Ontology\nfrom scientio.session import Session\nfrom scientio.ontology.node import Node\n\n# Load the ontology from a yaml file\nonto = Ontology(path_to_yaml=\"my_ontology.yml\")\n\n# Create a session (with default Neo4j backend)\nsess = Session(\n    ontology=onto,\n    neo4j_address=\"bolt://localhost:7687\",\n    neo4j_username=\"neo4j\",\n    neo4j_password=\"test\")\n\n# Get human/vulcan types from ontology\nhuman_type = onto.get_type(\"Human\")\nvulcan_type = onto.get_type(\"Vulcan\")\n\n# Create query templates to get the actual kirk/spock\nkirk = Node(metatype=human_type)\nspock = Node(metatype=vulcan_type)\n\n# Query Kirk and Spock from the database, using\n# the query nodes we created previously. We're just\n# gonna assume that the first human is Kirk, and the first\n# vulcan is Spock.\nkirk = sess.retrieve(request=kirk)[0]\nspock = sess.retrieve(request=spock)[0]\n\n# Add a relationship between Kirk and Spock\nkirk.add_relationships({\"captain_of\": {spock.get_id()}})\n\n# Make sure that the new relationship is persisted\nsess.update(kirk)\n```\n\n\n",
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