{ "info": { "author": "Kwangbom \"KB\" Choi, Ph.D.", "author_email": "kb.choi@jax.org", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Intended Audience :: Developers", "License :: OSI Approved :: MIT License", "Natural Language :: English", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7" ], "description": "======\nscBASE\n======\n\n\n.. image:: https://img.shields.io/pypi/v/scbase.svg\n :target: https://pypi.python.org/pypi/scbase\n\n.. image:: https://travis-ci.org/churchill-lab/scBASE.svg?branch=master\n :target: https://travis-ci.org/churchill-lab/scBASE\n\nAllele-specific expression (ASE) in single-cell resolution can reveal stochastic and dynamic features of gene expression in greater detail. However, analyzing single-cell ASE poses unique analytical challenges due to the extremely low depth of sequencing coverage per cell. In addition, allelic proportions often form U-shaped or W-shaped distribution because of the frequent occurrence of random monoallelic bursts. We propose a new method, **scBASE**, a \u201csoft\u201d zero-and-one inflated model for cellular allelic proportions in which we tackle data sparsity and variability by harnessing information derived from cell's population context.\n\n* Free software: MIT license\n* Documentation: https://churchill-lab.github.io/scBASE/\n\n\n=======\nHistory\n=======\n\n0.1.0 (2018-08-02)\n------------------\n\n* First release on PyPI.\n\n\n", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/churchill-lab/scBASE", "keywords": "scbase", "license": "MIT license", "maintainer": "", "maintainer_email": "", "name": "scbase", "package_url": "https://pypi.org/project/scbase/", "platform": "", "project_url": "https://pypi.org/project/scbase/", "project_urls": { "Homepage": "https://github.com/churchill-lab/scBASE" }, "release_url": "https://pypi.org/project/scbase/0.1.1/", "requires_dist": [ "numpy", "scipy", "Click (>=6.0)", "pystan (>=2.17)", "h5py (>=2.8)", "pandas (>=0.23.4)", "loompy (>=2.0.14)", "future", "six" ], "requires_python": "", "summary": "**scBASE** is a python implementation of \"soft\" zero-and-one inflated model for estimating cellular allelic proportions from scRNA-Seq data", "version": "0.1.1" }, "last_serial": 4463433, "releases": { "0.1.0": [ { "comment_text": "", "digests": { "md5": "89a67cd5408b5602a2d4a5946d88a1e2", "sha256": "e94abf1302ccca73e91890e08ce84108e3836890f94c5100304550eb8eabe148" }, "downloads": -1, "filename": "scbase-0.1.0.tar.gz", "has_sig": false, "md5_digest": "89a67cd5408b5602a2d4a5946d88a1e2", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 189150, "upload_time": "2018-10-31T03:47:52", "url": "https://files.pythonhosted.org/packages/fc/b0/93891e48140ce6269af49b98c377cc091c0a0c5e97d490f85b0f12493edf/scbase-0.1.0.tar.gz" } ], "0.1.1": [ { "comment_text": "", "digests": { "md5": "aae5825e04c7a87a29882babd470dd6d", "sha256": "5fc80e759e0268309821bde32b2508c7e44c65227dc838044c7b7eff143b1eb1" }, "downloads": -1, "filename": "scbase-0.1.1-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "aae5825e04c7a87a29882babd470dd6d", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 23619488, "upload_time": "2018-11-07T23:02:16", "url": "https://files.pythonhosted.org/packages/a3/d7/b22f76db469fca9718d58ed837796353e8fa5b3c2194d0b992de54a33c11/scbase-0.1.1-py2.py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "b19211b7c0ac535f32f1ab8f9896b826", "sha256": "1e7afa8fe12820d095def4adc3ce2d1adbcc7f9fbddf88ab061c0e5f338b3ccf" }, "downloads": -1, "filename": "scbase-0.1.1.tar.gz", "has_sig": false, "md5_digest": "b19211b7c0ac535f32f1ab8f9896b826", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 188179, "upload_time": "2018-11-07T23:02:19", "url": "https://files.pythonhosted.org/packages/51/7f/a1a1b1d8a310472436161d5c54c6f90a61f5c4b0a292da057abfac9d3bcd/scbase-0.1.1.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "aae5825e04c7a87a29882babd470dd6d", "sha256": "5fc80e759e0268309821bde32b2508c7e44c65227dc838044c7b7eff143b1eb1" }, "downloads": -1, "filename": "scbase-0.1.1-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "aae5825e04c7a87a29882babd470dd6d", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 23619488, "upload_time": "2018-11-07T23:02:16", "url": "https://files.pythonhosted.org/packages/a3/d7/b22f76db469fca9718d58ed837796353e8fa5b3c2194d0b992de54a33c11/scbase-0.1.1-py2.py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "b19211b7c0ac535f32f1ab8f9896b826", "sha256": "1e7afa8fe12820d095def4adc3ce2d1adbcc7f9fbddf88ab061c0e5f338b3ccf" }, "downloads": -1, "filename": "scbase-0.1.1.tar.gz", "has_sig": false, "md5_digest": "b19211b7c0ac535f32f1ab8f9896b826", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 188179, "upload_time": "2018-11-07T23:02:19", "url": "https://files.pythonhosted.org/packages/51/7f/a1a1b1d8a310472436161d5c54c6f90a61f5c4b0a292da057abfac9d3bcd/scbase-0.1.1.tar.gz" } ] }