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        "author": "Novo Nordisk Foundation Center for Biosustainability, Technical University Denmark",
        "author_email": "niso@biosustain.dtu.dk",
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            "Development Status :: 4 - Beta",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: Apache Software License",
            "Natural Language :: English",
            "Operating System :: POSIX",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "========================\nSanger Sequence Analysis\n========================\n\n.. image:: https://img.shields.io/pypi/v/sanger-sequencing.svg\n        :target: https://pypi.python.org/pypi/sanger-sequencing\n\n.. image:: https://img.shields.io/travis/biosustain/sanger-sequencing.svg\n        :target: https://travis-ci.org/biosustain/sanger-sequencing\n\n.. image:: https://readthedocs.org/projects/sanger-sequencing/badge/?version=latest\n        :target: https://sanger-sequencing.readthedocs.io/en/latest/?badge=latest\n        :alt: Documentation Status\n\n.. image:: https://pyup.io/repos/github/biosustain/sanger-sequencing/shield.svg\n     :target: https://pyup.io/repos/github/biosustain/sanger-sequencing/\n     :alt: Updates\n\n.. summary-start\n\nSemi-automated Sanger sequence analysis for plasmid verification.\n\nThis package is the result of an internal hackathon at the Novo Nordisk \nFoundation Center for Biosustainability and represents our approach to \nimproving the workflow of geneticists who need to verify plasmid \nconstructs by Sanger sequencing.\n\nGetting Started\n===============\n\nFrom a Python environment that has Python 3.6 or later installed you can easily \n\n.. code-block:: console\n\n    $ pip install sanger-sequencing\n\nor use ``pip3`` depending on your environment.\n\nWhen you import the package, two main components are made available to you: a\nconfiguration class that you can instantiate to set some global configuration\nvalues and a high level analysis interface.\n\n.. code-block:: python\n\n    import sanger_sequencing\n\n    config = sanger_sequencing.Configuration()\n    print(config.threshold)\n    print(config.output)\n\nYou can read more about the meaning of those attributes in the configuration \ndocumentation. The main entry point for doing any kind of analysis is the \n``sanger_verification`` function. This function requires three arguments: a \ntemplate table of what to analyze, a mapping from plasmid identifiers to \ntheir sequence records (typically coming from Genbank files), and a mapping \nfrom sample identifiers to sequence records (``.ab1`` files).\n\n.. summary-end\n\nYou can find the complete documentation at: https://sanger-sequencing.readthedocs.io.\n\nCopyright\n=========\n\n* Copyright (c) 2018 Novo Nordisk Foundation Center for Biosustainability, Technical University Denmark licensed\n  under the Apache License, Version 2.0\n\nCredits\n=======\n\nThis package was created using cookiecutter_ and the \n`DD-DeCaF/cookiecutter-decaf-python`_ project template.\n\n.. _cookiecutter: https://github.com/audreyr/cookiecutter\n.. _`DD-DeCaF/cookiecutter-decaf-python`: https://github.com/DD-DeCaF/cookiecutter-decaf-python\n\n\n\n",
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        "keywords": "Sanger sequencing,automated analysis,mix2seq,plasmid verification",
        "license": "Apache Software License Version 2.0",
        "maintainer": "Moritz E. Beber",
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