{ "info": { "author": "Ravi RT Merugu", "author_email": "rrmerugu@gmail.com", "bugtrack_url": null, "classifiers": [], "description": "# rsquarelabs-core\n\n[![Build Status](https://travis-ci.org/rsquarelabs/rsquarelabs-core.svg?branch=dev)](https://travis-ci.org/rsquarelabs/rsquarelabs-core)\n[![Requirements Status](https://requires.io/github/rsquarelabs/rsquarelabs-core/requirements.svg?branch=dev)](https://requires.io/github/rsquarelabs/rsquarelabs-core/requirements/?branch=dev)\n\n![rsquarelabs-core hero ](_docs/images/rsquarelabs-hero.jpg)\n\nThis is the library of automation pipeline modules\n\n[Website](http://rsquarelabs.org) |\n[Documentation](https://github.com/rsquarelabs/rsquarelabs-core/wiki/) |\n[Installation](https://github.com/rsquarelabs/rsquarelabs-core/wiki#installation) |\n[Mailing List](https://groups.google.com/d/forum/rsquarelabs-core) |\n[Gitter Chat](https://gitter.im/rsquarelabs/rsquarelabs-core)\n\n\n## Summary\n- [**Install**](#install)\n- [**Features**](#features)\n- [**Usage**](#usage)\n- [**Why rsquarelabs-core?**](#why-rsquarelabs-core)\n- [**Community**](#community)\n- [**Roadmap**](#roadmap)\n- [**Support**](#support)\n- [**License**](#license)\n\n\n## Install\n```\npip install rsquarelabs-core\n```\n**we currently support python 2.7 only**\n\n## Usage\n```\n# first: import the class that does protein-ligand minimisation\nfrom rsquarelabs_core.engines.gromacs import ProteinLigMin\n\n# Create and object with input files \nobj = ProteinLigMin(\n ligand_file='ligand.gro',\n ligand_topology_file='ligand.itp',\n protein_file='protein.pdb',\n working_dir='./',\n verbose=True,\n quiet=False\n)\n\n# call the method you want to start with\nobj.create_topology()\nobj.prepare_system()\nobj.write_em_mdp()\nobj.add_ions()\nobj.write_emreal_mdp()\nobj.minimize()\n\n \n\n```\n\n## Features\n1. Start a light weight webserver\n2. commands for /usr/local/bin/\n\n## Why rsquarelabs-core\n1. scaffolding the project\n2. project management\n3. Tracking the project via webclient\n\n\n## Community\nWant to join an open source project? Now it's your chance!\n\nDon't know what you want to help out with? Well here are some areas that we could use help with:\n\n- rsquarelabs-core scientific thoughts,\n- rsquarelabs-core [technical stack](_docs/notes/technical-stack.md)\n- rsquarelabs-core code - see [milestones](https://github.com/rsquarelabs/rsquarelabs-core/milestones) and [issues](https://github.com/rsquarelabs/rsquarelabs-core/issues) for more\n- rsquarelabs-core [documentation](https://github.com/rsquarelabs/rsquarelabs-core/wiki), [tutorials](https://github.com/rsquarelabs/rsquarelabs-core/wiki/Tutorials) and [examples](https://github.com/rsquarelabs/rsquarelabs-core/wiki/Examples)\n- rsquarelabs-core [website](http://rsquarelabs.org)\n- If you want to join our community as a contributor, please leave a message as [@rrmerugu](https://twitter.com/rrmerugu)\n\n\n\n## RoadMap\nYou can find a detailed Roadmap of rsquarelabs-core [here](https://github.com/rsquarelabs/rsquarelabs-core/milestones).\n\n## Support\nWe support universties and research labs to install, configure and setup rl-core\n\n## License", "description_content_type": null, "docs_url": null, "download_url": "http://github.com/rsquarelabs/rsquarelabs-core/tarball/0.0.7dev", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "http://github.com/rsquarelabs/rsquarelabs-core", "keywords": "Computational Biology,Molecular Modelling,Bioinformatics,Automation", "license": "UNKNOWN", "maintainer": null, "maintainer_email": null, "name": "rsquarelabs-core", "package_url": "https://pypi.org/project/rsquarelabs-core/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/rsquarelabs-core/", "project_urls": { "Download": "http://github.com/rsquarelabs/rsquarelabs-core/tarball/0.0.7dev", "Homepage": "http://github.com/rsquarelabs/rsquarelabs-core" }, "release_url": "https://pypi.org/project/rsquarelabs-core/0.0.7dev/", "requires_dist": null, "requires_python": null, "summary": "This is the library of automation pipeline modules developed at RSQUARE LABS.", "version": "0.0.7dev" }, "last_serial": 2126477, "releases": { "0.0.5dev3": [ { "comment_text": "", "digests": { "md5": "f73bb74c9875a1e9ccb3ec33c8a5316b", "sha256": "af9e463403a925bffc7f5dcd8975660a5d2da7a508fa2019f672ca655df83f27" }, "downloads": -1, "filename": "rsquarelabs-core-0.0.5dev3.tar.gz", "has_sig": false, "md5_digest": "f73bb74c9875a1e9ccb3ec33c8a5316b", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 2139, "upload_time": "2015-12-18T19:47:48", "url": "https://files.pythonhosted.org/packages/8d/66/c71db8ad0ee14128d2512e53c37868af0c42513e13e2d1263e91e9378eda/rsquarelabs-core-0.0.5dev3.tar.gz" } ], "0.0.7dev": [] }, "urls": [] }