{ "info": { "author": "Steve Davis", "author_email": "steven.davis@fda.hhs.gov", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Intended Audience :: Developers", "Intended Audience :: Science/Research", "License :: OSI Approved :: BSD License", "Natural Language :: English", "Programming Language :: Python :: 2", "Programming Language :: Python :: 2.7", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.4", "Programming Language :: Python :: 3.5", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7" ], "description": "===============================\nrefchooser\n===============================\n\n\n.. Image showing the PyPI version badge - links to PyPI\n.. image:: https://img.shields.io/pypi/v/refchooser.svg\n :target: https://pypi.python.org/pypi/refchooser\n\n.. Image showing the Travis Continuous Integration test status, commented out for now\n.. .. image:: https://img.shields.io/travis/CFSAN-Biostatistics/refchooser.svg\n.. :target: https://travis-ci.org/CFSAN-Biostatistics/refchooser\n\n\n\nTools to help choose a reference from a list of assemblies.\n\nThe refchooser project was developed by the United States Food\nand Drug Administration, Center for Food Safety and Applied Nutrition.\n\n* Free software\n* Documentation: https://refchooser.readthedocs.io\n* Source Code: https://github.com/CFSAN-Biostatistics/refchooser\n* PyPI Distribution: https://pypi.python.org/pypi/refchooser\n\n\nFeatures\n--------\n\n* Print a table of metrics to help choose an assembly from a collection.\n* N50\n* N90\n* Number of contigs\n* Assembly length\n* Mean mash distance to all other assemblies\n\n\nCiting refchooser\n--------------------------------------\n\nTo cite refchooser, please reference the refchooser GitHub repository:\n\n https://github.com/CFSAN-Biostatistics/refchooser\n\n\nLicense\n-------\n\nSee the LICENSE file included in the refchooser distribution.\n\n\n\n\nHistory\n=======\n\n0.2.1 (2019-08-20)\n---------------------\n\n* Detect and exclude empty assemblies.\n\n\n0.2.0 (2019-07-12)\n---------------------\n\n* Add N50 and N90 metrics.\n* Calculate a simple \"Score\" for each assembly, the N50/Distance ratio.\n* Combine all metrics in a single table sortable by any column.\n\n\n0.1.0 (2019-06-21)\n---------------------\n\n* Initial version.\n", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/CFSAN-Biostatistics/refchooser", "keywords": "bioinformatics", "license": "BSD", "maintainer": "", "maintainer_email": "", "name": "refchooser", "package_url": "https://pypi.org/project/refchooser/", "platform": "", "project_url": "https://pypi.org/project/refchooser/", "project_urls": { "Homepage": "https://github.com/CFSAN-Biostatistics/refchooser" }, "release_url": "https://pypi.org/project/refchooser/0.2.1/", "requires_dist": null, "requires_python": "", "summary": "Tools to help choosing a reference assembly.", "version": "0.2.1" }, "last_serial": 5705186, "releases": { "0.1.0": [ { "comment_text": "", "digests": { "md5": "f4c7e039361148665befef47b13ce46c", "sha256": "81fd899978ef9a4c2679c147207d69bfd789ba8d6930f0f55e3b4b95a83d3c66" }, "downloads": -1, "filename": "refchooser-0.1.0.tar.gz", "has_sig": false, "md5_digest": "f4c7e039361148665befef47b13ce46c", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 19215, "upload_time": "2019-06-24T12:42:01", "url": "https://files.pythonhosted.org/packages/2b/7d/c0d7022606489ea22040464561ee53eb61970adfee04916fa3f93d74c48c/refchooser-0.1.0.tar.gz" } ], "0.2.0": [ { "comment_text": "", "digests": { "md5": "f562dd012207349866d92613af82e02b", "sha256": "cec5224c4cd6a621d2afdace4f9924473ad4873b5cbb40e803bf8fbc071f8330" }, "downloads": -1, "filename": "refchooser-0.2.0.tar.gz", "has_sig": false, "md5_digest": "f562dd012207349866d92613af82e02b", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 22103, "upload_time": "2019-07-12T20:21:30", "url": "https://files.pythonhosted.org/packages/19/7a/509504d124192d9d758390acae4e83322f5aaddb639fba947d5a77ceede0/refchooser-0.2.0.tar.gz" } ], "0.2.1": [ { "comment_text": "", "digests": { "md5": "4dcf131b11ebd2454aae3ed659a9621d", "sha256": "5742f625ca99066ac1481d4034667184ec64552534b686b5ceb53e5fb96410a6" }, "downloads": -1, "filename": "refchooser-0.2.1.tar.gz", "has_sig": false, "md5_digest": "4dcf131b11ebd2454aae3ed659a9621d", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 22779, "upload_time": "2019-08-20T19:24:17", "url": "https://files.pythonhosted.org/packages/9f/3c/3996795b3ad3251c8ff60143afe49ced45b104771315920a297246b3e015/refchooser-0.2.1.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "4dcf131b11ebd2454aae3ed659a9621d", "sha256": "5742f625ca99066ac1481d4034667184ec64552534b686b5ceb53e5fb96410a6" }, "downloads": -1, "filename": "refchooser-0.2.1.tar.gz", "has_sig": false, "md5_digest": "4dcf131b11ebd2454aae3ed659a9621d", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 22779, "upload_time": "2019-08-20T19:24:17", "url": "https://files.pythonhosted.org/packages/9f/3c/3996795b3ad3251c8ff60143afe49ced45b104771315920a297246b3e015/refchooser-0.2.1.tar.gz" } ] }