{
    "info": {
        "author": "Valentine Svensson",
        "author_email": "valentine@nxn.se",
        "bugtrack_url": null,
        "classifiers": [],
        "description": "## readquant\n\nThis package contains helper functions for parsing both expression values\nand technical features from common RNA-seq quantification tools.\n\nThe goal is to simplify going from a collection of quantification results to\nexpression table, as well as sample meta data.\n\nA minimal example could look something like this:\n\n    In [1]: from readquant import read_quants, read_qcs\n\n    In [2]: tpm = read_quants('salmon/*E4_salmon_out', version='0.4.0')\n\n    In [3]: tpm.head()\n    Out[3]:\n            salmon/1771-026-195-E4_salmon_out  \\\n    Name\n    ERCC-00158                                0.0\n    ERCC-00154                                0.0\n    ERCC-00150                                0.0\n    ERCC-00143                                0.0\n    ERCC-00142                                0.0\n\n            salmon/1771-026-190-E4_salmon_out  \\\n    Name\n    ERCC-00158                                0.0\n    ERCC-00154                                0.0\n    ERCC-00150                                0.0\n    ERCC-00143                                0.0\n    ERCC-00142                                0.0\n\n            salmon/1771-026-196-E4_salmon_out  \\\n    Name\n    ERCC-00158                              0.000\n    ERCC-00154                            906.236\n    ERCC-00150                              0.000\n    ERCC-00143                              0.000\n    ERCC-00142                              0.000\n\n            salmon/1771-026-198-E4_salmon_out  \\\n    Name\n    ERCC-00158                                0.0\n    ERCC-00154                                0.0\n    ERCC-00150                                0.0\n    ERCC-00143                                0.0\n    ERCC-00142                                0.0\n\n            salmon/1771-023-118-E4_salmon_out  \\\n    Name\n    ERCC-00158                            0.00000\n    ERCC-00154                            9.35988\n    ERCC-00150                            0.00000\n    ERCC-00143                          724.44800\n    ERCC-00142                            0.00000\n\n            salmon/1771-026-193-E4_salmon_out\n    Name\n    ERCC-00158                                0.0\n    ERCC-00154                                0.0\n    ERCC-00150                                0.0\n    ERCC-00143                                0.0\n    ERCC-00142                                0.0\n\n    In [4]: sample_info = read_qcs('salmon/*_salmon_out', version='0.4.0', flen_lim=(10, 100))\n\n    In [5]: sample_info.head()\n    Out[5]:\n                                   percent_mapped  num_processed  \\\n    salmon/1771-026-197-G4_salmon_out         71.8270      2665988.0\n    salmon/1771-026-198-D2_salmon_out         67.7853      3841894.0\n    salmon/1771-026-195-H7_salmon_out         73.4492      3875822.0\n    salmon/1771-026-194-E9_salmon_out         47.5425       979446.0\n    salmon/1771-026-195-E4_salmon_out         56.3955      5051277.0\n\n                                   global_fl_mode  robust_fl_mode\n    salmon/1771-026-197-G4_salmon_out           103.0           103.0\n    salmon/1771-026-198-D2_salmon_out           122.0           122.0\n    salmon/1771-026-195-H7_salmon_out           110.0           110.0\n    salmon/1771-026-194-E9_salmon_out           111.0           111.0\n    salmon/1771-026-195-E4_salmon_out           111.0           111.0\n\n\n",
        "description_content_type": null,
        "docs_url": null,
        "download_url": "",
        "downloads": {
            "last_day": -1,
            "last_month": -1,
            "last_week": -1
        },
        "home_page": "",
        "keywords": "",
        "license": "MIT",
        "maintainer": "",
        "maintainer_email": "",
        "name": "readquant",
        "package_url": "https://pypi.org/project/readquant/",
        "platform": "",
        "project_url": "https://pypi.org/project/readquant/",
        "project_urls": null,
        "release_url": "https://pypi.org/project/readquant/1.2.0/",
        "requires_dist": [
            "pandas",
            "tqdm"
        ],
        "requires_python": "",
        "summary": "Convenience package for parsing RNA-seq quantification results",
        "version": "1.2.0"
    },
    "last_serial": 3097949,
    "releases": {
        "1.0.0": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "548513b0bb98952bcebb51133431c38d",
                    "sha256": "d1e42f773363b3e35dc465623eaee5549e5f2b461f3f505ba255a33248b1de77"
                },
                "downloads": -1,
                "filename": "readquant-1.0.0-py2.py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "548513b0bb98952bcebb51133431c38d",
                "packagetype": "bdist_wheel",
                "python_version": "py2.py3",
                "requires_python": null,
                "size": 5300,
                "upload_time": "2016-06-03T16:30:38",
                "url": "https://files.pythonhosted.org/packages/ac/d1/1321172fb3e530777cef66f18993cc2151dbb56c4b4abb11465540c4fb42/readquant-1.0.0-py2.py3-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "d89060957059af353a4ce0b81b9ef4bf",
                    "sha256": "0f2caba12b6543e98357aecb441e3cccf1ef63640b02d2177f14d09059f6aae1"
                },
                "downloads": -1,
                "filename": "readquant-1.0.0.tar.gz",
                "has_sig": false,
                "md5_digest": "d89060957059af353a4ce0b81b9ef4bf",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 3675,
                "upload_time": "2016-06-03T16:30:51",
                "url": "https://files.pythonhosted.org/packages/d7/7c/f777a3f23ea7784645da5962258e072a826943c56044cdb174556d3b9f6c/readquant-1.0.0.tar.gz"
            }
        ],
        "1.2.0": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "55e6ecda7976cee89fd4cb375541c1e8",
                    "sha256": "a9066c2f59471faeb395f563022eeeca0efa26774c4ca0b9e205ac89e18ddaab"
                },
                "downloads": -1,
                "filename": "readquant-1.2.0-py2.py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "55e6ecda7976cee89fd4cb375541c1e8",
                "packagetype": "bdist_wheel",
                "python_version": "py2.py3",
                "requires_python": null,
                "size": 11338,
                "upload_time": "2017-08-15T12:07:00",
                "url": "https://files.pythonhosted.org/packages/a1/13/295512ed53fe5c77236f27045cd699b81fa98a21f9607ce628afa1ec4f5f/readquant-1.2.0-py2.py3-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "7200ed43100671b0a11c6bd99a2e3d1b",
                    "sha256": "3ab1e65a0bc3e5ffeaf8ae901649e191b000e56ad04a2645825eccb7ffa6696f"
                },
                "downloads": -1,
                "filename": "readquant-1.2.0.tar.gz",
                "has_sig": false,
                "md5_digest": "7200ed43100671b0a11c6bd99a2e3d1b",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 7693,
                "upload_time": "2017-08-15T12:07:02",
                "url": "https://files.pythonhosted.org/packages/86/ed/ba3d16796965b292de60789017eec8590a8b608db235b3665973ad3da1d9/readquant-1.2.0.tar.gz"
            }
        ]
    },
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "md5": "55e6ecda7976cee89fd4cb375541c1e8",
                "sha256": "a9066c2f59471faeb395f563022eeeca0efa26774c4ca0b9e205ac89e18ddaab"
            },
            "downloads": -1,
            "filename": "readquant-1.2.0-py2.py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "55e6ecda7976cee89fd4cb375541c1e8",
            "packagetype": "bdist_wheel",
            "python_version": "py2.py3",
            "requires_python": null,
            "size": 11338,
            "upload_time": "2017-08-15T12:07:00",
            "url": "https://files.pythonhosted.org/packages/a1/13/295512ed53fe5c77236f27045cd699b81fa98a21f9607ce628afa1ec4f5f/readquant-1.2.0-py2.py3-none-any.whl"
        },
        {
            "comment_text": "",
            "digests": {
                "md5": "7200ed43100671b0a11c6bd99a2e3d1b",
                "sha256": "3ab1e65a0bc3e5ffeaf8ae901649e191b000e56ad04a2645825eccb7ffa6696f"
            },
            "downloads": -1,
            "filename": "readquant-1.2.0.tar.gz",
            "has_sig": false,
            "md5_digest": "7200ed43100671b0a11c6bd99a2e3d1b",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 7693,
            "upload_time": "2017-08-15T12:07:02",
            "url": "https://files.pythonhosted.org/packages/86/ed/ba3d16796965b292de60789017eec8590a8b608db235b3665973ad3da1d9/readquant-1.2.0.tar.gz"
        }
    ]
}