{
"info": {
"author": "QIIME development team",
"author_email": "qiime.help@gmail.com",
"bugtrack_url": null,
"classifiers": [
"Development Status :: 3 - Alpha",
"Operating System :: MacOS :: MacOS X",
"Operating System :: POSIX",
"Operating System :: Unix",
"Programming Language :: Python",
"Programming Language :: Python :: 2",
"Programming Language :: Python :: 2.7",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.3",
"Programming Language :: Python :: 3.4",
"Topic :: Scientific/Engineering :: Bio-Informatics"
],
"description": "qiime-default-reference\n-----------------------\n\n|Build Status| |Coverage Status|\n\nqiime-default-reference, canonically pronounced *chime default reference*, is a\nPython package containing default reference data files for use with\n`QIIME `_. The current default reference data is compiled\nfrom the Greengenes 16S rRNA database version\n`13_8 `_.\nPlease see the **Attribution** section below for more details.\n\nInstallation\n------------\nTo install qiime-default-reference::\n\n pip install qiime-default-reference\n\nRunning the tests\n-----------------\nTo run qiime-default-reference's unit tests::\n\n nosetests --with-doctest qiime_default_reference\n\nAttribution\n^^^^^^^^^^^\nThe reference data distributed in this Python package were copied from the\n`Greengenes 16S rRNA database `_:\n\n**An improved Greengenes taxonomy with explicit ranks for ecological and\nevolutionary analyses of bacteria and archaea.**\nMcDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A,\nAndersen GL, Knight R, Hugenholtz P.\nISME J. 2012 Mar;6(3):610-8. doi: 10.1038/ismej.2011.139.\n\nThe Greengenes reference data is licensed under a\n`Creative Commons Attribution-ShareAlike 3.0 Unported License `_.\n\nThe default template alignment column mask (i.e., \"Lane mask\") is derived from:\n\nLane,D.J. (1991) **16S/23S rRNA sequencing.** In Stackebrandt,E. and\nGoodfellow,M. (eds), Nucleic Acid Techniques in Bacterial Systematics.\nJohn Wiley and Sons, New York, pp. 115-175.\n\nLane mask was originally available in `ARB `_.\n\nLane mask taken from `here `_.\n\nGetting Help\n^^^^^^^^^^^^\nPlease post your questions about this repository/package on the `QIIME Forum `_.\n\n.. |Build Status| image:: https://travis-ci.org/biocore/qiime-default-reference.svg?branch=master\n :target: https://travis-ci.org/biocore/qiime-default-reference\n.. |Coverage Status| image:: https://coveralls.io/repos/biocore/qiime-default-reference/badge.png\n :target: https://coveralls.io/r/biocore/qiime-default-reference",
"description_content_type": null,
"docs_url": null,
"download_url": "UNKNOWN",
"downloads": {
"last_day": -1,
"last_month": -1,
"last_week": -1
},
"home_page": "http://www.qiime.org",
"keywords": null,
"license": "CC BY-SA 3.0",
"maintainer": null,
"maintainer_email": null,
"name": "qiime-default-reference",
"package_url": "https://pypi.org/project/qiime-default-reference/",
"platform": "UNKNOWN",
"project_url": "https://pypi.org/project/qiime-default-reference/",
"project_urls": {
"Download": "UNKNOWN",
"Homepage": "http://www.qiime.org"
},
"release_url": "https://pypi.org/project/qiime-default-reference/0.1.3/",
"requires_dist": null,
"requires_python": null,
"summary": "Default reference data files for use with QIIME.",
"version": "0.1.3"
},
"last_serial": 1578964,
"releases": {
"0.1.0": [
{
"comment_text": "",
"digests": {
"md5": "fa8866190e6c3069f2215a9bfe38b6aa",
"sha256": "149e99a6c76e67ee8c00afe1ccce4ccca2cd920e6c74b824529f436b77fc5986"
},
"downloads": -1,
"filename": "qiime-default-reference-0.1.0.tar.gz",
"has_sig": false,
"md5_digest": "fa8866190e6c3069f2215a9bfe38b6aa",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 33670325,
"upload_time": "2014-12-11T01:59:51",
"url": "https://files.pythonhosted.org/packages/68/cc/539336726661164875fe3ee444d7f12c53c4ed70d3bb3c93622dd85256a5/qiime-default-reference-0.1.0.tar.gz"
}
],
"0.1.1": [
{
"comment_text": "",
"digests": {
"md5": "64af92c59c1f8a8c9afbafc6992f49d0",
"sha256": "434bb46c570aacbd101345dc30257f29825ec17f4cebe78a490d3a252d0980eb"
},
"downloads": -1,
"filename": "qiime-default-reference-0.1.1.tar.gz",
"has_sig": false,
"md5_digest": "64af92c59c1f8a8c9afbafc6992f49d0",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 34621293,
"upload_time": "2014-12-11T18:34:49",
"url": "https://files.pythonhosted.org/packages/80/a0/f14397f943d526396cf33283fe4d501b434db24edabdf69bd09929c64b08/qiime-default-reference-0.1.1.tar.gz"
}
],
"0.1.2": [
{
"comment_text": "",
"digests": {
"md5": "bce0c966a5be9f392433992cd312c1fe",
"sha256": "d7eec817a970cb04ce32251cf40986bb0d0b28590196743d30b2523cd33248eb"
},
"downloads": -1,
"filename": "qiime-default-reference-0.1.2.tar.gz",
"has_sig": false,
"md5_digest": "bce0c966a5be9f392433992cd312c1fe",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 35185189,
"upload_time": "2015-04-15T17:54:51",
"url": "https://files.pythonhosted.org/packages/c1/88/e5bf240aee4f092fdcf3e0d894b8ff79d19ba1e2e69343efc7125eb9f5f6/qiime-default-reference-0.1.2.tar.gz"
}
],
"0.1.3": [
{
"comment_text": "",
"digests": {
"md5": "4a5ccf5930690478de1eb881e8030bff",
"sha256": "8dea65590d044500130c59927ebb150b3a01f3cc274bd47d389b64b45c58c992"
},
"downloads": -1,
"filename": "qiime-default-reference-0.1.3.tar.gz",
"has_sig": false,
"md5_digest": "4a5ccf5930690478de1eb881e8030bff",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 35185266,
"upload_time": "2015-06-04T23:14:30",
"url": "https://files.pythonhosted.org/packages/e9/0e/5c24fc7feba040a1cb556c87a990fa4c52ecd21dc15b2857063c877e9913/qiime-default-reference-0.1.3.tar.gz"
}
]
},
"urls": [
{
"comment_text": "",
"digests": {
"md5": "4a5ccf5930690478de1eb881e8030bff",
"sha256": "8dea65590d044500130c59927ebb150b3a01f3cc274bd47d389b64b45c58c992"
},
"downloads": -1,
"filename": "qiime-default-reference-0.1.3.tar.gz",
"has_sig": false,
"md5_digest": "4a5ccf5930690478de1eb881e8030bff",
"packagetype": "sdist",
"python_version": "source",
"requires_python": null,
"size": 35185266,
"upload_time": "2015-06-04T23:14:30",
"url": "https://files.pythonhosted.org/packages/e9/0e/5c24fc7feba040a1cb556c87a990fa4c52ecd21dc15b2857063c877e9913/qiime-default-reference-0.1.3.tar.gz"
}
]
}