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        "author": "Ram\u00f3n Casero",
        "author_email": "rcasero@gmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3.6",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
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        "description": "Summary\n=======\n\n``pysto`` are a few miscellaneous processing python functions.\n\nThe name is a play of words on \"pisto\", a Manchego dish made of\ntomatoes, onions, courgettes, green and red peppers and olive oil.\n\nUser instructions\n=================\n\nInstalling pysto with pip\n-------------------------\n\n1. Simply run from your local environment or whole system\n\n   ::\n\n       pip install pysto\n\nInstalling pysto from the cloned github repository\n--------------------------------------------------\n\n1. Clone the pysto repository\n\n   ::\n\n       git clone https://github.com/rcasero/pysto.git\n\n2. Activate the local environment of the other project, or you can also\n   work without a local environment. For example, to activate a local\n   conda environment called \"myproject\"\n\n   ::\n\n       source activate myproject\n\n3. Install pysto from the pysto root directory (note that if you are\n   installing it system-wide, you may need to run the command as root)\n\n   ::\n\n       cd pysto\n       pip install .\n\nUninstalling pysto\n------------------\n\n1. Uninstall the package\n\n   ::\n\n       pip uninstall pysto\n\nDeveloper instructions\n======================\n\nInstall pysto project for development\n-------------------------------------\n\n1. Clone the pysto repository\n\n   ::\n\n       git clone https://github.com/rcasero/pysto.git\n\n2. Run ``install_dependencies.sh`` to install development tools, create\n   local environments for python 2.7 and 3.6, and install python\n   dependencies. ``pysto`` depends on SimpleITK, and there are two\n   options:\n\n   1. Install the official SimpleITK package\n\n      ::\n\n          cd pysto\n          ./install_dependencies.sh\n\n   2. Build and install SimpleElastix, which is an extension of\n      SimpleITK\n\n      ::\n\n          cd pysto\n          ./install_dependencies.sh SimpleElastix\n\nDeveloping source code for pysto\n--------------------------------\n\n1. Activate one of the pysto local environments\n\n   ::\n\n       source activate pysto_3.6\n\n2. If you are making changes to the code, you want your python\n   environment to import the code you are working with in\n   ``~/Software/pysto``, not the package installed in your local conda\n   environment. Thus, add the project's source directory to\n   ``PYTHONPATH``\n\n   ::\n\n       export PYTHONPATH=~/Software/pysto:$PYTHONPATH\n\n3. Launch the development IDE, e.g.\n\n   ::\n\n       spyder&\n\n4. In your code, import the pysto modules/functions in the usual way,\n   e.g.\n\n   ::\n\n       import pysto.imgproc as pymg        \n       [...]\n       imf = pymg.imfuse(im1, im2)\n\n5. While developing, you can run all tests (both for python 2.7 and 3.6)\n   from the command line with\n\n   ::\n\n       make test\n\n6. You need to have a local file ``~/.pypirc`` (replace\n   ``<the password>`` by the password). This will be used by ``twine``\n   to release packages to PyPI\n\n   ::\n\n       [distutils]\n       index-servers =\n         pypi\n         pypitest\n\n       [pypi]\n       username=rcasero\n       password=<the password>\n\n       [pypitest]\n       repository = https://test.pypi.org/legacy/\n       username=rcasero\n       password=<the password>\n\n7. Protect the file so that it can be read only by you\n\n   ::\n\n       chmod 600 ~/.pypirc\n\nUninstalling pysto\n------------------\n\n1. Uninstall the package\n\n   ::\n\n       pip uninstall pysto\n\nReleasing a new version of pysto to PyPI\n----------------------------------------\n\nWe provide a ``Makefile`` to simplify testing and releasing.\n\n1. Run tests to make sure nothing obvious got broken\n\n   ::\n\n       make test\n\n2. Commit and push all the code that should go in the release to github.\n\n3. Update ``setup.py`` with release version, any new dependencies, the\n   new download URL, changes to the description...\n\n   ::\n\n       from setuptools import setup, find_packages\n\n       setup(\n           name='pysto',\n           version='1.0.0',\n           download_url = 'https://github.com/rcasero/pysto/archive/1.0.0.tar.gz',\n           packages=find_packages(),\n           python_requires='>=3.6',\n           install_requires=['matplotlib>=2.0','numpy>=1.13','opencv-python>=3.3.0'],\n           description='Miscellanea image processing functions',\n           url='https://github.com/rcasero/pysto',\n           author='Ram\u00f3n Casero',\n           author_email='rcasero@gmail.com',\n           license='GPL v3',\n       )\n\n4. Update ``ChangeLog.md`` with the main changes to this release. For\n   example,\n\n   ::\n\n       ## v1.0.0\n       ### Added\n\n       - imgproc.matchHist(): \"Modify image intensities to match the\n         histogram of a reference image\" by\n         [rcasero](https://github.com/rcasero)\n       - imgproc.imfuse(): \"Composite of two images\" by\n         [rcasero](https://github.com/rcasero)\n       - testdata/*.png: Stereo cloud images with ROI masks (left_mask.png,\n         left.png, right_mask.png, right.png) by\n         [rcasero](https://github.com/rcasero)\n\n5. Tag the release in github, create the package/wheel and upload to the\n   test PyPI server\n\n   ::\n\n       make test-package\n\n6. You should be able to see your package in\n\n   ::\n\n       https://test.pypi.org/project/pysto/\n\n7. If everything goes well, upload to PyPI Live\n\n   ::\n\n       make package\n\n8. You should be able to see your package in\n\n   ::\n\n       https://pypi.org/project/pysto/\n\n\n",
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