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        "author": "Yuanhua Huang",
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        "description": "pySeqLib\n========\n\nA small python library to process sequencing data. It is under active development.\n\n\nWhat's inside?\n---------------\n\n* ``intronX``: a program to fetch sequence related features for introns: \n  1) length, 2) splice site motif strength, 3) second structure energy \n  4) frequecy of k-mers. See manual_ and example_.\n\n* ``pymfold``: a python wrap of mfold for calculate energy of RNA secondary \n  structure. We got installation issue from mfold, similar as this_. Therefore,\n  we recommend using `pyRNAfold` instead.\n\n* ``pyRNAfold``: a python wrap of for another predictor, RNAfold, of RNA \n  secondary structure energy. It is from the ViennaRNA_ package.\n\n* ``motif-score``: a motif score calculate\n\n* a sequence mapper to find lariat in RNA-seq reads (under test)\n\n* a sam file resampling method\n\n.. _this: http://unafold.rna.albany.edu/?q=node/927\n.. _ViennaRNA: https://www.tbi.univie.ac.at/RNA/index.html\n.. _manual: https://github.com/huangyh09/pyseqlib/blob/master/doc/intronX_manual.rst\n.. _example: https://sourceforge.net/projects/pyseqlib/files/intronX-example/\n\n\nHow to install?\n---------------\n\nPyseqlib was initially developed in Python 2 environment, hence best to be used \nin Py2 environment. By using Anaconda platform, no matter Py2 or Py 3, it is \neasy to set up a conda environment with Py2, for example by following commond:\n\n.. code-block:: bash\n\n   conda create -n Py2 python=2.7 numpy==1.15.4 pysam==0.15.2 Cython==0.29.3 matplotlib==2.2.3\n   source activate Py2\n\nOnce you are in a Python 2 environment, you can download the codes from this \ngithub repository and then run the following command line:\n\n::\n\n    python setup.py install\n\nIf you don't have the root permission, add ``--user``.\n\nRquired libraries: ``pysam``,  ``numpy``, ``Cython``.",
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